Wall clock time and date at job start Mon Mar 30 2020 01:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99891 * 2 1 4 4 N 1.46893 * 109.47362 * 124.15377 * 3 2 1 5 5 C 1.46905 * 110.99999 * 300.35512 * 4 3 2 6 6 C 1.50702 * 109.46836 * 288.26327 * 5 4 3 7 7 H 1.07997 * 119.99890 * 354.76511 * 6 5 4 8 8 C 1.37882 * 120.00014 * 174.76709 * 6 5 4 9 9 N 1.31524 * 119.99728 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00046 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47445 * 89.99992 * 10 8 6 12 12 H 1.48503 * 109.47333 * 209.99637 * 10 8 6 13 13 H 1.48498 * 109.47228 * 329.99906 * 10 8 6 14 14 C 1.46900 * 111.00106 * 64.30396 * 4 3 2 15 15 C 1.50700 * 109.46822 * 66.04571 * 14 4 3 16 16 S 1.75868 * 125.20042 * 269.97778 * 15 14 4 17 17 C 1.75861 * 91.02515 * 180.02562 * 16 15 14 18 18 C 1.33445 * 109.65592 * 359.72963 * 17 16 15 19 19 C 1.33632 * 125.19050 * 89.99817 * 15 14 4 20 20 O 1.36225 * 122.59141 * 359.97438 * 19 15 14 21 21 C 1.42906 * 117.00253 * 179.97438 * 20 19 15 22 22 H 1.08003 * 120.00002 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.99944 * 180.02562 * 1 2 3 24 24 H 1.07993 * 120.00072 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.46766 * 4.15143 * 3 2 1 26 26 H 1.09001 * 109.46466 * 244.15566 * 3 2 1 27 27 H 1.09003 * 109.47135 * 48.25704 * 5 4 3 28 28 H 1.09001 * 109.47172 * 168.26247 * 5 4 3 29 29 H 0.96998 * 119.99409 * 180.02562 * 9 8 6 30 30 H 1.08999 * 109.47484 * 306.05025 * 14 4 3 31 31 H 1.08996 * 109.47342 * 186.04467 * 14 4 3 32 32 H 1.08001 * 125.17634 * 179.97438 * 17 16 15 33 33 H 1.08001 * 122.55650 * 180.26778 * 18 17 16 34 34 H 1.08999 * 109.47193 * 179.97438 * 21 20 19 35 35 H 1.08998 * 109.47357 * 300.00324 * 21 20 19 36 36 H 1.09003 * 109.46855 * 60.00027 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9817 1.3405 1.1460 5 6 2.2483 1.2121 2.4124 6 6 1.4855 2.4835 2.6822 7 1 1.6060 3.3346 2.0284 8 6 0.6338 2.5602 3.7638 9 7 0.4868 1.5235 4.5598 10 14 -0.3122 4.1358 4.0978 11 1 -1.6166 4.0897 3.3895 12 1 -0.5464 4.2725 5.5579 13 1 0.4742 5.2978 3.6117 14 6 4.0126 0.3007 1.0270 15 6 4.8995 0.6055 -0.1526 16 16 4.6270 0.0455 -1.7973 17 6 6.0813 0.8649 -2.3509 18 6 6.6626 1.4896 -1.3249 19 6 6.0135 1.3422 -0.1084 20 8 6.4731 1.9094 1.0417 21 6 7.6775 2.6734 0.9523 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9352 0.0004 25 1 1.3575 2.1323 0.0744 26 1 2.6331 1.3957 -0.9249 27 1 1.5507 0.3772 2.3452 28 1 2.9533 1.0322 3.2240 29 1 -0.1127 1.5773 5.3205 30 1 3.5358 -0.6687 0.8822 31 1 4.6127 0.2782 1.9366 32 1 6.4461 0.8660 -3.3674 33 1 7.5712 2.0634 -1.4332 34 1 7.9312 3.0683 1.9360 35 1 8.4867 2.0356 0.5966 36 1 7.5329 3.4993 0.2558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292691800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:35 Heat of formation + Delta-G solvation = 29.485879 kcal Electronic energy + Delta-G solvation = -18297.283275 eV Core-core repulsion = 15488.777975 eV Total energy + Delta-G solvation = -2808.505300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58282 -37.30121 -35.53481 -32.73362 -32.33044 -30.16746 -27.48435 -26.56869 -25.59700 -24.06200 -22.51766 -20.84072 -19.33507 -18.90244 -17.09854 -16.49674 -16.03033 -15.59486 -15.00184 -14.81825 -14.58919 -14.24946 -13.75687 -13.55279 -13.09102 -12.61237 -12.51205 -12.09880 -11.96742 -11.45355 -11.09810 -10.97257 -10.92304 -10.80892 -10.68432 -10.55056 -10.50450 -10.35506 -9.87226 -9.18745 -8.71711 -8.38339 -8.32060 -7.69853 -7.11303 -5.93397 -3.93492 1.15618 1.77375 2.08473 2.89557 2.98441 3.36416 3.42510 3.47484 3.87139 4.50241 4.83553 5.14560 5.22089 5.27186 5.30444 5.41812 5.56624 5.60172 5.67490 5.73970 5.84541 5.99817 6.08123 6.19769 6.38366 6.48506 6.64453 6.77718 7.22827 7.34337 7.41605 7.51855 7.59431 7.91152 8.19066 8.29395 8.64377 9.14285 9.69593 11.17158 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.006044 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.178790 B = 4631.424507 C = 5532.017803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 C 0.085 3.915 4 N -0.520 5.520 5 C 0.191 3.809 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.131 3.869 15 C -0.199 4.199 16 S 0.121 5.879 17 C -0.206 4.206 18 C -0.184 4.184 19 C 0.103 3.897 20 O -0.293 6.293 21 C 0.032 3.968 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.006 0.994 28 H 0.023 0.977 29 H 0.259 0.741 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.444 -2.389 -12.763 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.200 4.200 3 C -0.043 4.043 4 N -0.243 5.243 5 C 0.066 3.934 6 C -0.536 4.536 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.002 3.998 15 C -0.317 4.317 16 S 0.384 5.616 17 C -0.342 4.342 18 C -0.217 4.217 19 C 0.048 3.952 20 O -0.207 6.207 21 C -0.064 4.064 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.024 0.976 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.181 0.819 33 H 0.158 0.842 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.427 -2.860 -13.075 16.967 hybrid contribution 0.351 0.968 0.786 1.295 sum 10.777 -1.892 -12.290 16.455 Atomic orbital electron populations 1.23678 0.95984 1.01083 1.00853 1.23529 0.96724 0.99728 0.99983 1.21356 0.94674 0.94306 0.93997 1.62434 1.13394 1.44335 1.04102 1.19780 0.92185 0.97146 0.84251 1.21124 1.23325 0.98663 1.10538 0.92055 1.24956 0.97023 0.96375 0.96215 1.69967 1.38063 1.29638 1.16279 0.86558 0.80132 0.83877 0.77207 1.20849 1.21369 1.19857 1.20350 0.92702 0.93498 0.93285 1.23628 1.00668 1.08668 0.98734 1.84209 1.23960 1.52844 1.00626 1.25342 1.00595 1.05474 1.02792 1.20202 1.03411 1.05777 0.92310 1.17576 0.94564 0.97099 0.86003 1.86287 1.41009 1.64906 1.28458 1.22969 0.85348 0.94542 1.03557 0.88479 0.89731 0.88859 0.89870 0.91788 0.97595 0.95847 0.93113 0.94827 0.89498 0.81925 0.84244 0.88522 0.93516 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 14.32 29.01 0.42 -2.85 16 2 C -0.18 -3.41 7.42 -36.02 -0.27 -3.67 16 3 C 0.09 1.72 5.46 -4.98 -0.03 1.70 16 4 N -0.52 -11.69 4.65 -238.96 -1.11 -12.80 16 5 C 0.19 5.08 4.58 -4.97 -0.02 5.06 16 6 C -0.50 -14.24 8.52 -34.44 -0.29 -14.54 16 7 H 0.06 1.76 7.66 -52.49 -0.40 1.36 16 8 C 0.05 1.59 5.46 -17.81 -0.10 1.49 16 9 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 10 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.13 2.57 5.14 -4.98 -0.03 2.55 16 15 C -0.20 -3.39 5.26 -35.92 -0.19 -3.58 16 16 S 0.12 1.66 21.78 -107.50 -2.34 -0.68 16 17 C -0.21 -2.43 11.22 29.06 0.33 -2.11 16 18 C -0.18 -2.37 9.16 -41.10 -0.38 -2.75 16 19 C 0.10 1.66 6.59 -41.04 -0.27 1.39 16 20 O -0.29 -4.89 10.16 -20.46 -0.21 -5.10 16 21 C 0.03 0.36 9.92 101.05 1.00 1.36 16 22 H 0.10 1.82 7.84 -52.48 -0.41 1.41 16 23 H 0.08 1.39 8.06 -52.49 -0.42 0.96 16 24 H 0.09 1.68 6.80 -52.49 -0.36 1.32 16 25 H 0.08 1.82 7.03 -51.93 -0.37 1.46 16 26 H 0.06 1.18 5.81 -51.93 -0.30 0.88 16 27 H 0.01 0.18 6.71 -51.93 -0.35 -0.17 16 28 H 0.02 0.67 7.81 -51.93 -0.41 0.26 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.03 0.64 6.35 -51.93 -0.33 0.31 16 31 H 0.09 1.78 7.68 -51.93 -0.40 1.38 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.14 1.42 6.91 -52.49 -0.36 1.06 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.43 7.86 -51.93 -0.41 0.02 16 36 H 0.05 0.51 7.83 -51.93 -0.41 0.11 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -31.61 312.65 -7.96 -39.57 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.90 Total: -0.44 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 0.17 Total: -15.96 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.37 Total: -39.17 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.21 Total: -5.10 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.34 Total: -0.68 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.61 -7.96 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292691800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.057 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds