Wall clock time and date at job start Mon Mar 30 2020 01:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99891 * 2 1 4 4 N 1.46893 * 109.47362 * 124.15377 * 3 2 1 5 5 C 1.46905 * 110.99999 * 300.35512 * 4 3 2 6 6 C 1.50702 * 109.46836 * 288.26327 * 5 4 3 7 7 H 1.07997 * 119.99890 * 354.76511 * 6 5 4 8 8 C 1.37882 * 120.00014 * 174.76709 * 6 5 4 9 9 N 1.31524 * 119.99728 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00046 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47445 * 89.99992 * 10 8 6 12 12 H 1.48503 * 109.47333 * 209.99637 * 10 8 6 13 13 H 1.48498 * 109.47228 * 329.99906 * 10 8 6 14 14 C 1.46900 * 111.00106 * 64.30396 * 4 3 2 15 15 C 1.50700 * 109.46822 * 66.04571 * 14 4 3 16 16 S 1.75868 * 125.20042 * 269.97778 * 15 14 4 17 17 C 1.75861 * 91.02515 * 180.02562 * 16 15 14 18 18 C 1.33445 * 109.65592 * 359.72963 * 17 16 15 19 19 C 1.33632 * 125.19050 * 89.99817 * 15 14 4 20 20 O 1.36225 * 122.59141 * 359.97438 * 19 15 14 21 21 C 1.42906 * 117.00253 * 179.97438 * 20 19 15 22 22 H 1.08003 * 120.00002 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.99944 * 180.02562 * 1 2 3 24 24 H 1.07993 * 120.00072 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.46766 * 4.15143 * 3 2 1 26 26 H 1.09001 * 109.46466 * 244.15566 * 3 2 1 27 27 H 1.09003 * 109.47135 * 48.25704 * 5 4 3 28 28 H 1.09001 * 109.47172 * 168.26247 * 5 4 3 29 29 H 0.96998 * 119.99409 * 180.02562 * 9 8 6 30 30 H 1.08999 * 109.47484 * 306.05025 * 14 4 3 31 31 H 1.08996 * 109.47342 * 186.04467 * 14 4 3 32 32 H 1.08001 * 125.17634 * 179.97438 * 17 16 15 33 33 H 1.08001 * 122.55650 * 180.26778 * 18 17 16 34 34 H 1.08999 * 109.47193 * 179.97438 * 21 20 19 35 35 H 1.08998 * 109.47357 * 300.00324 * 21 20 19 36 36 H 1.09003 * 109.46855 * 60.00027 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9817 1.3405 1.1460 5 6 2.2483 1.2121 2.4124 6 6 1.4855 2.4835 2.6822 7 1 1.6060 3.3346 2.0284 8 6 0.6338 2.5602 3.7638 9 7 0.4868 1.5235 4.5598 10 14 -0.3122 4.1358 4.0978 11 1 -1.6166 4.0897 3.3895 12 1 -0.5464 4.2725 5.5579 13 1 0.4742 5.2978 3.6117 14 6 4.0126 0.3007 1.0270 15 6 4.8995 0.6055 -0.1526 16 16 4.6270 0.0455 -1.7973 17 6 6.0813 0.8649 -2.3509 18 6 6.6626 1.4896 -1.3249 19 6 6.0135 1.3422 -0.1084 20 8 6.4731 1.9094 1.0417 21 6 7.6775 2.6734 0.9523 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9352 0.0004 25 1 1.3575 2.1323 0.0744 26 1 2.6331 1.3957 -0.9249 27 1 1.5507 0.3772 2.3452 28 1 2.9533 1.0322 3.2240 29 1 -0.1127 1.5773 5.3205 30 1 3.5358 -0.6687 0.8822 31 1 4.6127 0.2782 1.9366 32 1 6.4461 0.8660 -3.3674 33 1 7.5712 2.0634 -1.4332 34 1 7.9312 3.0683 1.9360 35 1 8.4867 2.0356 0.5966 36 1 7.5329 3.4993 0.2558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292691800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:35 Heat of formation + Delta-G solvation = 8.837986 kcal Electronic energy + Delta-G solvation = -18298.178635 eV Core-core repulsion = 15488.777975 eV Total energy + Delta-G solvation = -2809.400659 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73343 -38.97734 -36.64791 -34.83749 -33.90189 -31.62160 -29.13116 -27.99123 -26.97517 -25.64655 -23.94086 -22.60525 -20.56645 -20.32722 -18.48432 -18.09926 -17.63831 -16.91235 -16.60243 -16.16312 -16.03471 -15.87752 -15.40487 -14.72493 -14.55366 -14.10572 -13.77557 -13.61131 -13.47849 -13.05985 -12.75665 -12.60989 -12.49943 -12.28160 -12.22748 -12.16314 -11.94113 -11.77838 -11.62811 -11.28985 -10.58325 -10.21224 -9.53075 -8.91735 -8.81786 -8.15151 -6.24626 0.08577 0.69023 1.04041 1.40197 1.41707 1.44584 1.53374 1.81904 2.42521 2.82388 3.16420 3.53052 3.81509 4.06373 4.09261 4.25592 4.39740 4.43212 4.47139 4.56148 4.60454 4.74537 4.80474 4.90829 4.96721 5.03095 5.09770 5.23076 5.34175 5.51371 5.67908 5.71666 5.90372 6.12190 6.40557 6.52943 6.65024 6.90757 7.43908 8.94906 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.006044 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.178790 B = 4631.424507 C = 5532.017803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.189 4.189 3 C 0.091 3.909 4 N -0.530 5.530 5 C 0.210 3.790 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.141 3.859 15 C -0.249 4.249 16 S 0.132 5.868 17 C -0.177 4.177 18 C -0.196 4.196 19 C 0.103 3.897 20 O -0.331 6.331 21 C 0.023 3.977 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.084 0.916 27 H -0.015 1.015 28 H -0.010 1.010 29 H 0.263 0.737 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.205 0.795 33 H 0.170 0.830 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.255 -1.588 -14.893 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.209 4.209 3 C -0.037 4.037 4 N -0.253 5.253 5 C 0.084 3.916 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.012 3.988 15 C -0.366 4.366 16 S 0.394 5.606 17 C -0.313 4.313 18 C -0.228 4.228 19 C 0.047 3.953 20 O -0.246 6.246 21 C -0.071 4.071 22 H 0.108 0.892 23 H 0.125 0.875 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.002 0.998 28 H 0.009 0.991 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.222 0.778 33 H 0.188 0.812 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.254 -2.058 -15.223 19.043 hybrid contribution 0.211 0.709 1.402 1.585 sum 11.465 -1.349 -13.821 18.007 Atomic orbital electron populations 1.23852 0.95903 1.01871 0.99752 1.23497 0.97016 0.99414 1.00938 1.21271 0.94264 0.94319 0.93824 1.62316 1.13828 1.46088 1.03061 1.19370 0.90979 0.95707 0.85554 1.21363 1.23937 0.99119 1.10800 0.92640 1.25826 0.97867 0.99844 0.95772 1.70092 1.38748 1.31780 1.16757 0.85464 0.78842 0.79544 0.77263 1.19698 1.20720 1.19269 1.20111 0.91916 0.92684 0.94119 1.23440 1.01606 1.11844 0.99736 1.84077 1.25388 1.53001 0.98176 1.25862 0.98547 1.02616 1.04256 1.20399 1.04608 1.06815 0.90969 1.18011 0.94314 0.95952 0.87023 1.86235 1.43151 1.65480 1.29693 1.23260 0.84242 0.94902 1.04735 0.89190 0.87460 0.87882 0.92042 0.89770 0.99769 0.99144 0.92840 0.94752 0.91916 0.77846 0.81229 0.87684 0.91154 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.42 14.32 67.78 0.97 -5.45 16 2 C -0.19 -7.22 7.42 25.64 0.19 -7.03 16 3 C 0.09 3.76 5.46 85.56 0.47 4.23 16 4 N -0.53 -24.80 4.65 -909.93 -4.23 -29.04 16 5 C 0.21 11.72 4.58 85.56 0.39 12.12 16 6 C -0.51 -30.29 8.52 25.60 0.22 -30.07 16 7 H 0.06 3.27 7.66 -2.91 -0.02 3.24 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 10 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 14 C 0.14 5.77 5.14 85.56 0.44 6.21 16 15 C -0.25 -8.48 5.26 24.64 0.13 -8.35 16 16 S 0.13 3.37 21.78 -56.49 -1.23 2.14 16 17 C -0.18 -3.48 11.22 66.73 0.75 -2.74 16 18 C -0.20 -4.44 9.16 21.29 0.20 -4.25 16 19 C 0.10 3.25 6.59 21.33 0.14 3.39 16 20 O -0.33 -11.08 10.16 -96.12 -0.98 -12.05 16 21 C 0.02 0.50 9.92 113.37 1.12 1.62 16 22 H 0.09 3.39 7.84 -2.91 -0.02 3.37 16 23 H 0.11 3.39 8.06 -2.91 -0.02 3.37 16 24 H 0.10 3.72 6.80 -2.91 -0.02 3.70 16 25 H 0.06 2.77 7.03 -2.38 -0.02 2.75 16 26 H 0.08 3.10 5.81 -2.39 -0.01 3.08 16 27 H -0.02 -0.91 6.71 -2.39 -0.02 -0.93 16 28 H -0.01 -0.58 7.81 -2.39 -0.02 -0.60 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.03 1.36 6.35 -2.39 -0.02 1.35 16 31 H 0.06 2.78 7.68 -2.39 -0.02 2.76 16 32 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.17 2.74 6.91 -2.91 -0.02 2.72 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.14 7.86 -2.39 -0.02 1.12 16 36 H 0.06 1.14 7.83 -2.39 -0.02 1.12 16 Total: -1.00 -70.26 312.65 2.42 -67.84 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.06 Total: 10.17 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 5.48 Total: -29.57 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -3.95 Total: -86.18 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.98 Total: -12.05 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.23 Total: 2.14 kcal Total: -70.26 2.42 -67.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292691800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.678 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds