Wall clock time and date at job start Mon Mar 30 2020 00:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46922 * 2 1 4 4 O 1.42898 * 109.47402 * 240.00332 * 2 1 3 5 5 C 1.42901 * 114.00480 * 89.99563 * 4 2 1 6 6 C 1.50697 * 109.47191 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.97433 * 89.99768 * 6 5 4 8 8 C 1.38205 * 120.02377 * 179.74187 * 7 6 5 9 9 C 1.38455 * 119.97496 * 0.26259 * 8 7 6 10 10 F 1.35097 * 120.02414 * 180.02562 * 9 8 7 11 11 C 1.38464 * 119.95049 * 359.97438 * 9 8 7 12 12 C 1.38201 * 119.97214 * 0.02562 * 11 9 8 13 13 C 1.50704 * 109.47344 * 119.99650 * 2 1 3 14 14 O 1.21291 * 119.99629 * 120.00458 * 13 2 1 15 15 N 1.34773 * 119.99972 * 299.99926 * 13 2 1 16 16 C 1.37102 * 119.99716 * 179.97438 * 15 13 2 17 17 H 1.07994 * 119.99891 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99589 * 180.02562 * 16 15 13 19 19 N 1.31420 * 119.99634 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00474 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47277 * 89.99246 * 20 18 16 22 22 H 1.48495 * 109.47324 * 209.99728 * 20 18 16 23 23 H 1.48510 * 109.46682 * 329.99545 * 20 18 16 24 24 H 1.09001 * 109.47421 * 59.99854 * 1 2 3 25 25 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 300.00092 * 1 2 3 27 27 H 1.09002 * 109.46929 * 60.00194 * 5 4 2 28 28 H 1.08994 * 109.46774 * 300.00537 * 5 4 2 29 29 H 1.08002 * 119.99029 * 0.02809 * 7 6 5 30 30 H 1.08004 * 120.00758 * 180.27782 * 8 7 6 31 31 H 1.07993 * 120.01407 * 180.02562 * 11 9 8 32 32 H 1.07996 * 119.98812 * 180.02562 * 12 11 9 33 33 H 0.96997 * 120.00096 * 0.02562 * 15 13 2 34 34 H 0.96997 * 119.99677 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7003 -0.6284 -3.4614 7 6 1.8004 -1.1995 -4.3417 8 6 2.2581 -1.9393 -5.4156 9 6 3.6184 -2.1129 -5.6064 10 9 4.0670 -2.8355 -6.6561 11 6 4.5187 -1.5445 -4.7212 12 6 4.0587 -0.8051 -3.6481 13 6 2.0323 -0.7103 1.2305 14 8 2.7297 -1.6964 1.1192 15 7 1.7068 -0.2498 2.4546 16 6 2.1634 -0.8964 3.5740 17 1 2.7843 -1.7744 3.4749 18 6 1.8273 -0.4219 4.8360 19 7 2.2655 -1.0414 5.9090 20 14 0.7528 1.0965 5.0074 21 1 -0.6748 0.6901 5.0524 22 1 1.1035 1.8122 6.2603 23 1 0.9756 1.9942 3.8455 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.9319 0.9514 -2.0450 28 1 1.2538 0.6547 -2.5588 29 1 0.7393 -1.0637 -4.1929 30 1 1.5549 -2.3817 -6.1057 31 1 5.5800 -1.6789 -4.8693 32 1 4.7606 -0.3613 -2.9577 33 1 1.1488 0.5386 2.5436 34 1 2.0306 -0.7103 6.7900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294469177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:23 Heat of formation + Delta-G solvation = -100.303194 kcal Electronic energy + Delta-G solvation = -19294.949076 eV Core-core repulsion = 15914.602524 eV Total energy + Delta-G solvation = -3380.346552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.04817 -39.53205 -38.75388 -36.95578 -33.98637 -32.34793 -31.63900 -31.30632 -30.29775 -26.01716 -25.29440 -23.23471 -22.98370 -21.59968 -19.40413 -18.55257 -17.84549 -16.79263 -16.61881 -16.14584 -15.72020 -15.48811 -14.98215 -14.86680 -14.29247 -13.97774 -13.70280 -13.56707 -13.14367 -12.94608 -12.79695 -12.36934 -12.24038 -12.14688 -11.97843 -11.49413 -11.22753 -11.15601 -10.90595 -10.61010 -10.00021 -9.65309 -9.56366 -9.25901 -8.82074 -8.39209 -8.21411 -6.33547 -3.85473 0.90609 1.08517 2.99159 3.03959 3.12353 3.24321 3.66803 3.89695 4.07489 4.09182 4.51932 4.57753 4.71877 4.90955 4.98970 5.08509 5.12777 5.18607 5.34429 5.39384 5.50535 5.62734 5.75008 5.78848 5.82263 5.94149 5.98947 6.06751 6.31158 6.37699 6.70982 7.26006 7.56701 8.10315 8.57075 8.92075 9.38315 9.78279 10.79472 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042912 B = 0.003514 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.344122 B = 7966.991750 C = 8319.002210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 H 0.074 0.926 4 O -0.346 6.346 5 C 0.098 3.902 6 C -0.093 4.093 7 C -0.069 4.069 8 C -0.159 4.159 9 C 0.099 3.901 10 F -0.142 7.142 11 C -0.157 4.157 12 C -0.065 4.065 13 C 0.452 3.548 14 O -0.556 6.556 15 N -0.586 5.586 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.043 3.957 19 N -0.880 5.880 20 Si 0.878 3.122 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.269 1.269 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.370 0.630 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 6.393 -19.999 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.092 0.908 4 O -0.264 6.264 5 C 0.021 3.979 6 C -0.094 4.094 7 C -0.087 4.087 8 C -0.178 4.178 9 C 0.080 3.920 10 F -0.121 7.121 11 C -0.175 4.175 12 C -0.083 4.083 13 C 0.237 3.763 14 O -0.437 6.437 15 N -0.226 5.226 16 C -0.434 4.434 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.519 5.519 20 Si 0.704 3.296 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.195 1.195 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.203 0.797 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.295 5.466 -19.880 20.745 hybrid contribution -0.814 1.307 0.187 1.551 sum -3.110 6.773 -19.693 21.056 Atomic orbital electron populations 1.22255 0.94751 1.03650 1.02116 1.21906 0.94228 0.95998 0.86460 0.90810 1.88148 1.86618 1.33267 1.18366 1.21364 0.99553 0.91822 0.85162 1.19689 0.93515 1.00137 0.96008 1.20933 1.00071 0.94831 0.92885 1.21110 0.93795 1.02420 1.00427 1.17763 0.92837 0.94976 0.86462 1.91491 1.89944 1.75534 1.55109 1.21146 1.00113 1.00491 0.95788 1.21003 0.95298 0.96194 0.95804 1.19505 0.85771 0.87548 0.83458 1.90589 1.40127 1.27152 1.85801 1.42130 1.47418 1.27568 1.05503 1.19437 1.30198 1.11835 0.81940 0.86195 1.25028 0.97855 0.98116 0.95054 1.69622 1.44435 1.39949 0.97943 0.86696 0.81339 0.82924 0.78604 1.19491 1.20073 1.19478 0.92157 0.91025 0.91288 0.92234 0.92378 0.84820 0.84684 0.84583 0.84603 0.79651 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.42 37.15 0.35 -2.01 16 2 C 0.08 1.29 3.14 -27.88 -0.09 1.20 16 3 H 0.07 1.05 7.79 -51.93 -0.40 0.64 16 4 O -0.35 -6.00 9.50 -55.14 -0.52 -6.53 16 5 C 0.10 1.20 5.87 36.00 0.21 1.41 16 6 C -0.09 -1.12 5.51 -104.62 -0.58 -1.70 16 7 C -0.07 -0.74 9.70 -39.59 -0.38 -1.12 16 8 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 9 C 0.10 1.13 7.30 -39.42 -0.29 0.84 16 10 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 11 C -0.16 -1.73 10.03 -39.51 -0.40 -2.12 16 12 C -0.06 -0.76 9.70 -39.59 -0.38 -1.14 16 13 C 0.45 10.56 7.18 -10.98 -0.08 10.48 16 14 O -0.56 -15.73 16.08 -14.36 -0.23 -15.96 16 15 N -0.59 -13.92 4.98 -10.96 -0.05 -13.98 16 16 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 17 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 18 C 0.04 1.16 5.50 -17.46 -0.10 1.06 16 19 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 20 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 24 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.90 7.56 -51.93 -0.39 0.50 16 27 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 28 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.37 7.62 5.18 -40.82 -0.21 7.41 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -33.82 304.11 -6.32 -40.14 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.91 Total: 7.82 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.28 Total: -3.94 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.72 Total: -38.75 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.75 Total: -22.49 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.82 -6.32 -40.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294469177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.163 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds