Wall clock time and date at job start Mon Mar 30 2020 00:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46922 * 2 1 4 4 O 1.42898 * 109.47402 * 240.00332 * 2 1 3 5 5 C 1.42901 * 114.00480 * 89.99563 * 4 2 1 6 6 C 1.50697 * 109.47191 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.97433 * 89.99768 * 6 5 4 8 8 C 1.38205 * 120.02377 * 179.74187 * 7 6 5 9 9 C 1.38455 * 119.97496 * 0.26259 * 8 7 6 10 10 F 1.35097 * 120.02414 * 180.02562 * 9 8 7 11 11 C 1.38464 * 119.95049 * 359.97438 * 9 8 7 12 12 C 1.38201 * 119.97214 * 0.02562 * 11 9 8 13 13 C 1.50704 * 109.47344 * 119.99650 * 2 1 3 14 14 O 1.21291 * 119.99629 * 120.00458 * 13 2 1 15 15 N 1.34773 * 119.99972 * 299.99926 * 13 2 1 16 16 C 1.37102 * 119.99716 * 179.97438 * 15 13 2 17 17 H 1.07994 * 119.99891 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99589 * 180.02562 * 16 15 13 19 19 N 1.31420 * 119.99634 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00474 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47277 * 89.99246 * 20 18 16 22 22 H 1.48495 * 109.47324 * 209.99728 * 20 18 16 23 23 H 1.48510 * 109.46682 * 329.99545 * 20 18 16 24 24 H 1.09001 * 109.47421 * 59.99854 * 1 2 3 25 25 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 300.00092 * 1 2 3 27 27 H 1.09002 * 109.46929 * 60.00194 * 5 4 2 28 28 H 1.08994 * 109.46774 * 300.00537 * 5 4 2 29 29 H 1.08002 * 119.99029 * 0.02809 * 7 6 5 30 30 H 1.08004 * 120.00758 * 180.27782 * 8 7 6 31 31 H 1.07993 * 120.01407 * 180.02562 * 11 9 8 32 32 H 1.07996 * 119.98812 * 180.02562 * 12 11 9 33 33 H 0.96997 * 120.00096 * 0.02562 * 15 13 2 34 34 H 0.96997 * 119.99677 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7003 -0.6284 -3.4614 7 6 1.8004 -1.1995 -4.3417 8 6 2.2581 -1.9393 -5.4156 9 6 3.6184 -2.1129 -5.6064 10 9 4.0670 -2.8355 -6.6561 11 6 4.5187 -1.5445 -4.7212 12 6 4.0587 -0.8051 -3.6481 13 6 2.0323 -0.7103 1.2305 14 8 2.7297 -1.6964 1.1192 15 7 1.7068 -0.2498 2.4546 16 6 2.1634 -0.8964 3.5740 17 1 2.7843 -1.7744 3.4749 18 6 1.8273 -0.4219 4.8360 19 7 2.2655 -1.0414 5.9090 20 14 0.7528 1.0965 5.0074 21 1 -0.6748 0.6901 5.0524 22 1 1.1035 1.8122 6.2603 23 1 0.9756 1.9942 3.8455 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.9319 0.9514 -2.0450 28 1 1.2538 0.6547 -2.5588 29 1 0.7393 -1.0637 -4.1929 30 1 1.5549 -2.3817 -6.1057 31 1 5.5800 -1.6789 -4.8693 32 1 4.7606 -0.3613 -2.9577 33 1 1.1488 0.5386 2.5436 34 1 2.0306 -0.7103 6.7900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294469177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:22 Heat of formation + Delta-G solvation = -123.138408 kcal Electronic energy + Delta-G solvation = -19295.939286 eV Core-core repulsion = 15914.602524 eV Total energy + Delta-G solvation = -3381.336761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.93775 -40.76424 -40.07774 -38.32428 -36.03111 -33.98425 -33.06838 -32.12135 -31.47824 -27.27173 -26.85503 -24.48456 -24.03543 -22.47159 -21.28227 -20.42184 -18.71578 -18.10569 -17.67414 -17.40316 -16.96499 -16.61788 -16.48955 -16.10721 -15.58010 -15.23023 -15.05735 -14.66532 -14.48516 -14.23858 -14.20045 -13.93072 -13.34249 -13.22819 -13.07537 -12.96778 -12.52035 -12.43018 -12.02119 -11.97232 -11.94812 -11.53852 -10.81115 -10.28455 -10.21074 -10.07785 -9.67012 -8.42639 -6.05127 0.03036 0.26521 1.30323 1.36421 1.45787 1.88307 2.21627 2.24297 2.72499 3.12504 3.24656 3.30595 3.73177 3.83116 3.93970 4.01092 4.09640 4.18532 4.26506 4.28924 4.50799 4.61521 4.76400 4.88882 4.95907 4.98700 5.12066 5.22458 5.26931 5.50939 5.53035 5.88500 5.90488 6.19548 6.58360 6.84940 7.34794 7.91368 8.75008 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042912 B = 0.003514 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.344122 B = 7966.991750 C = 8319.002210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.086 3.914 3 H 0.113 0.887 4 O -0.382 6.382 5 C 0.093 3.907 6 C -0.110 4.110 7 C -0.070 4.070 8 C -0.159 4.159 9 C 0.083 3.917 10 F -0.147 7.147 11 C -0.164 4.164 12 C -0.080 4.080 13 C 0.445 3.555 14 O -0.619 6.619 15 N -0.580 5.580 16 C -0.334 4.334 17 H 0.052 0.948 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.253 1.253 22 H -0.274 1.274 23 H -0.226 1.226 24 H 0.104 0.896 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.392 0.608 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 9.612 -21.486 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.025 3.975 3 H 0.130 0.870 4 O -0.301 6.301 5 C 0.017 3.983 6 C -0.111 4.111 7 C -0.088 4.088 8 C -0.178 4.178 9 C 0.064 3.936 10 F -0.126 7.126 11 C -0.182 4.182 12 C -0.098 4.098 13 C 0.232 3.768 14 O -0.504 6.504 15 N -0.222 5.222 16 C -0.463 4.463 17 H 0.070 0.930 18 C -0.212 4.212 19 N -0.573 5.573 20 Si 0.783 3.217 21 H -0.178 1.178 22 H -0.199 1.199 23 H -0.149 1.149 24 H 0.122 0.878 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.175 0.825 30 H 0.175 0.825 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.228 0.772 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.853 8.704 -21.399 23.606 hybrid contribution 0.090 0.172 0.597 0.628 sum -4.763 8.876 -20.802 23.113 Atomic orbital electron populations 1.22270 0.91759 1.03308 1.04951 1.21834 0.96195 0.96162 0.83274 0.86968 1.88107 1.87045 1.35493 1.19498 1.21652 1.01751 0.91462 0.83421 1.19899 0.93814 1.00848 0.96492 1.21231 1.01134 0.94103 0.92346 1.21401 0.93713 1.01958 1.00695 1.18009 0.93609 0.95405 0.86608 1.91475 1.90080 1.75714 1.55330 1.21332 1.00955 1.00305 0.95648 1.21186 0.95777 0.96676 0.96178 1.20958 0.83897 0.86705 0.85214 1.90555 1.42660 1.30132 1.87021 1.41903 1.47722 1.27999 1.04596 1.19002 1.31257 1.11391 0.84613 0.92957 1.26162 0.99065 1.02443 0.93535 1.69810 1.46043 1.42480 0.98956 0.85392 0.78795 0.77437 0.80112 1.17758 1.19872 1.14938 0.87775 0.93031 0.89961 0.91040 0.88911 0.82454 0.82540 0.83367 0.84278 0.77206 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 9.42 71.98 0.68 -3.21 16 2 C 0.09 2.70 3.14 29.85 0.09 2.79 16 3 H 0.11 2.65 7.79 -2.38 -0.02 2.63 16 4 O -0.38 -12.55 9.50 -129.94 -1.23 -13.78 16 5 C 0.09 1.98 5.87 71.23 0.42 2.40 16 6 C -0.11 -2.45 5.51 -19.86 -0.11 -2.56 16 7 C -0.07 -1.33 9.70 22.26 0.22 -1.12 16 8 C -0.16 -3.03 10.03 22.31 0.22 -2.81 16 9 C 0.08 1.83 7.30 22.38 0.16 1.99 16 10 F -0.15 -3.39 17.27 44.97 0.78 -2.61 16 11 C -0.16 -3.54 10.03 22.31 0.22 -3.32 16 12 C -0.08 -1.81 9.70 22.26 0.22 -1.60 16 13 C 0.44 20.85 7.18 87.66 0.63 21.48 16 14 O -0.62 -36.80 16.08 15.97 0.26 -36.55 16 15 N -0.58 -27.37 4.98 -306.99 -1.53 -28.90 16 16 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 17 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 18 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 19 N -0.93 -56.05 13.96 21.66 0.30 -55.74 16 20 Si 0.96 37.54 27.74 68.60 1.90 39.44 16 21 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.23 -7.21 6.52 99.48 0.65 -6.56 16 24 H 0.10 1.58 7.87 -2.39 -0.02 1.56 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.72 7.56 -2.38 -0.02 1.70 16 27 H 0.07 1.33 8.03 -2.39 -0.02 1.32 16 28 H 0.09 1.33 7.81 -2.39 -0.02 1.31 16 29 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.39 14.87 5.18 -92.71 -0.48 14.39 16 34 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.93 304.11 5.13 -75.79 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.58 Total: 27.38 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.07 Total: -5.03 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.23 Total: -84.64 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -0.98 Total: -50.33 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.90 Total: 39.44 kcal Total: -80.93 5.13 -75.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294469177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.344 kcal (2) G-P(sol) polarization free energy of solvation -80.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds