Wall clock time and date at job start Mon Mar 30 2020 00:27:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09005 * 109.47051 * 2 1
4 4 N 1.46901 * 109.47481 * 119.99764 * 2 1 3
5 5 C 1.46900 * 110.99829 * 275.00363 * 4 2 1
6 6 C 1.50697 * 109.46807 * 179.97438 * 5 4 2
7 7 H 1.08000 * 120.00388 * 0.02562 * 6 5 4
8 8 C 1.37879 * 120.00112 * 179.97438 * 6 5 4
9 9 N 1.31513 * 120.00598 * 179.97438 * 8 6 5
10 10 Si 1.86803 * 119.99797 * 0.02562 * 8 6 5
11 11 H 1.48493 * 109.47386 * 89.99652 * 10 8 6
12 12 H 1.48501 * 109.46860 * 209.99803 * 10 8 6
13 13 H 1.48506 * 109.46804 * 329.99415 * 10 8 6
14 14 C 1.52997 * 109.47274 * 240.00292 * 2 1 3
15 15 H 1.09002 * 109.72362 * 185.56813 * 14 2 1
16 16 O 1.43026 * 109.68861 * 306.12321 * 14 2 1
17 17 C 1.43042 * 114.23559 * 171.81580 * 16 14 2
18 18 C 1.53432 * 109.08964 * 288.73152 * 17 16 14
19 19 C 1.51408 * 107.90605 * 47.42201 * 18 17 16
20 20 S 1.75516 * 126.27368 * 164.55556 * 19 18 17
21 21 C 1.75809 * 91.03344 * 179.97438 * 20 19 18
22 22 C 1.33064 * 109.61770 * 0.02562 * 21 20 19
23 23 C 1.34870 * 123.68107 * 344.54138 * 19 18 17
24 24 H 1.08998 * 109.47447 * 299.99914 * 1 2 3
25 25 H 1.08996 * 109.47157 * 60.00396 * 1 2 3
26 26 H 1.09005 * 109.47051 * 180.02562 * 1 2 3
27 27 H 1.00906 * 110.99681 * 38.95287 * 4 2 1
28 28 H 1.09001 * 109.47253 * 299.99517 * 5 4 2
29 29 H 1.09002 * 109.47265 * 59.99853 * 5 4 2
30 30 H 0.96993 * 120.00640 * 180.02562 * 9 8 6
31 31 H 1.09001 * 109.53341 * 48.61514 * 17 16 14
32 32 H 1.09004 * 109.53812 * 168.84867 * 17 16 14
33 33 H 1.09000 * 109.77533 * 167.02491 * 18 17 16
34 34 H 1.09006 * 109.77002 * 287.76990 * 18 17 16
35 35 H 1.08001 * 125.18520 * 180.02562 * 21 20 19
36 36 H 1.08000 * 122.18559 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6924 1.1994
5 6 2.0824 0.2227 2.3469
6 6 2.5874 -0.5216 3.5560
7 1 2.8372 -1.5696 3.4796
8 6 2.7315 0.1354 4.7595
9 7 3.1717 -0.5142 5.8149
10 14 2.3002 1.9482 4.8915
11 1 0.8710 2.0908 5.2683
12 1 3.1514 2.5852 5.9282
13 1 2.5356 2.6095 3.5828
14 6 2.0400 -0.7212 -1.2492
15 1 3.1254 -0.8106 -1.2050
16 8 1.4522 -2.0227 -1.3281
17 6 1.7164 -2.7131 -2.5526
18 6 0.9247 -2.0467 -3.6854
19 6 1.1373 -0.5510 -3.5846
20 16 0.7819 0.6346 -4.8291
21 6 1.3422 1.9386 -3.7915
22 6 1.7462 1.4399 -2.6259
23 6 1.6397 0.0612 -2.4929
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 1.4496 -1.4979 1.4101
28 1 2.7588 1.0463 2.1182
29 1 1.0870 0.6164 2.5525
30 1 3.2728 -0.0521 6.6616
31 1 2.7823 -2.6649 -2.7755
32 1 1.4096 -3.7547 -2.4573
33 1 1.2857 -2.4064 -4.6489
34 1 -0.1355 -2.2772 -3.5794
35 1 1.3564 2.9847 -4.0594
36 1 2.1308 2.0661 -1.8345
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000298524586.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:27:52
Heat of formation + Delta-G solvation = -33.898965 kcal
Electronic energy + Delta-G solvation = -18338.792981 eV
Core-core repulsion = 15527.539108 eV
Total energy + Delta-G solvation = -2811.253873 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.00099 -37.70917 -37.39464 -34.86646 -33.29653 -32.03878 -29.69011 -28.21763
-26.80979 -25.10044 -23.33337 -22.68621 -21.93834 -19.21781 -18.93260 -18.28625
-17.56538 -16.85116 -16.29346 -15.91850 -15.64213 -15.58913 -15.18712 -14.70674
-14.58938 -14.36738 -13.86319 -13.63424 -13.53489 -13.25609 -13.05795 -12.86337
-12.59140 -12.46110 -12.29313 -12.00992 -11.83759 -11.72971 -11.54212 -11.38487
-10.80967 -10.50683 -9.50321 -9.30552 -9.06552 -8.28662 -6.32923 0.01649
0.67674 1.02030 1.35124 1.37115 1.48361 1.66892 2.35016 2.86024
3.05329 3.37711 3.70955 3.85294 3.94464 4.10925 4.25451 4.29548
4.37949 4.41608 4.51412 4.65563 4.76159 4.78343 4.84270 4.88366
4.94259 5.00487 5.13468 5.16029 5.27288 5.38524 5.51061 5.54677
5.97580 6.29294 6.58932 6.67543 6.78321 7.31860 8.88329
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.031046 B = 0.004713 C = 0.004249
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 901.675996 B = 5939.954917 C = 6588.938512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.095 3.905
3 H 0.085 0.915
4 N -0.679 5.679
5 C 0.177 3.823
6 C -0.527 4.527
7 H 0.036 0.964
8 C 0.008 3.992
9 N -0.948 5.948
10 Si 0.951 3.049
11 H -0.267 1.267
12 H -0.280 1.280
13 H -0.248 1.248
14 C 0.174 3.826
15 H 0.064 0.936
16 O -0.384 6.384
17 C 0.057 3.943
18 C -0.077 4.077
19 C -0.190 4.190
20 S 0.124 5.876
21 C -0.213 4.213
22 C -0.137 4.137
23 C -0.147 4.147
24 H 0.044 0.956
25 H 0.064 0.936
26 H 0.059 0.941
27 H 0.339 0.661
28 H 0.026 0.974
29 H -0.013 1.013
30 H 0.267 0.733
31 H 0.055 0.945
32 H 0.120 0.880
33 H 0.108 0.892
34 H 0.092 0.908
35 H 0.188 0.812
36 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.324 3.086 -24.780 25.759
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.015 4.015
3 H 0.103 0.897
4 N -0.309 5.309
5 C 0.048 3.952
6 C -0.565 4.565
7 H 0.054 0.946
8 C -0.189 4.189
9 N -0.589 5.589
10 Si 0.774 3.226
11 H -0.192 1.192
12 H -0.206 1.206
13 H -0.172 1.172
14 C 0.113 3.887
15 H 0.081 0.919
16 O -0.303 6.303
17 C -0.021 4.021
18 C -0.116 4.116
19 C -0.307 4.307
20 S 0.390 5.610
21 C -0.348 4.348
22 C -0.167 4.167
23 C -0.160 4.160
24 H 0.063 0.937
25 H 0.083 0.917
26 H 0.078 0.922
27 H 0.157 0.843
28 H 0.044 0.956
29 H 0.004 0.996
30 H 0.076 0.924
31 H 0.074 0.926
32 H 0.138 0.862
33 H 0.126 0.874
34 H 0.111 0.889
35 H 0.206 0.794
36 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -6.317 3.087 -26.118 27.048
hybrid contribution -0.108 0.850 2.130 2.296
sum -6.425 3.938 -23.988 25.144
Atomic orbital electron populations
1.22218 0.96251 1.02194 1.01261 1.21558 0.93885 0.96880 0.89216
0.89745 1.60411 1.56887 1.09807 1.03830 1.19774 0.94123 0.92723
0.88568 1.21343 1.43634 0.97464 0.94105 0.94608 1.25875 0.94535
1.03501 0.94994 1.70052 1.48202 1.38947 1.01677 0.85667 0.78700
0.79294 0.78968 1.19186 1.20595 1.17208 1.20862 0.95969 0.81779
0.90071 0.91858 1.87983 1.75431 1.28712 1.38141 1.22851 0.99019
0.96954 0.83229 1.21035 1.02570 0.87057 1.00956 1.25033 1.07320
1.00900 0.97474 1.83834 1.63720 0.96333 1.17129 1.25716 1.07737
1.03888 0.97490 1.20034 1.03501 0.94063 0.99055 1.20209 1.04529
0.94495 0.96814 0.93708 0.91714 0.92228 0.84314 0.95601 0.99583
0.92366 0.92650 0.86249 0.87402 0.88947 0.79446 0.84151
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.01 8.77 71.98 0.63 -4.38 16
2 C 0.10 3.22 2.28 44.91 0.10 3.33 16
3 H 0.08 2.81 6.72 -2.38 -0.02 2.79 16
4 N -0.68 -28.96 6.20 -495.58 -3.07 -32.03 16
5 C 0.18 8.61 4.31 85.56 0.37 8.98 16
6 C -0.53 -31.28 9.87 25.60 0.25 -31.03 16
7 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16
8 C 0.01 0.49 5.47 84.66 0.46 0.96 16
9 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16
10 Si 0.95 44.50 27.47 68.60 1.88 46.39 16
11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16
13 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16
14 C 0.17 5.25 2.92 30.36 0.09 5.34 16
15 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
16 O -0.38 -11.35 9.43 -148.98 -1.40 -12.75 16
17 C 0.06 1.20 6.83 72.13 0.49 1.69 16
18 C -0.08 -1.36 6.55 30.22 0.20 -1.16 16
19 C -0.19 -4.16 6.44 25.14 0.16 -4.00 16
20 S 0.12 2.21 23.32 -56.49 -1.32 0.90 16
21 C -0.21 -3.99 11.21 66.66 0.75 -3.24 16
22 C -0.14 -3.16 9.42 21.27 0.20 -2.96 16
23 C -0.15 -3.77 4.45 -19.97 -0.09 -3.86 16
24 H 0.04 1.45 7.45 -2.39 -0.02 1.44 16
25 H 0.06 1.82 7.37 -2.39 -0.02 1.81 16
26 H 0.06 1.90 7.53 -2.38 -0.02 1.88 16
27 H 0.34 14.78 8.46 -89.69 -0.76 14.02 16
28 H 0.03 1.26 7.11 -2.39 -0.02 1.24 16
29 H -0.01 -0.64 6.86 -2.39 -0.02 -0.65 16
30 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16
31 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16
32 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16
33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16
35 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16
36 H 0.14 3.15 7.27 -2.91 -0.02 3.12 16
Total: -1.00 -68.09 303.50 0.27 -67.82
By element:
Atomic # 1 Polarization: 19.61 SS G_CDS: 0.27 Total: 19.87 kcal
Atomic # 6 Polarization: -33.95 SS G_CDS: 3.62 Total: -30.33 kcal
Atomic # 7 Polarization: -89.11 SS G_CDS: -2.78 Total: -91.89 kcal
Atomic # 8 Polarization: -11.35 SS G_CDS: -1.40 Total: -12.75 kcal
Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal
Atomic # 16 Polarization: 2.21 SS G_CDS: -1.32 Total: 0.90 kcal
Total: -68.09 0.27 -67.82 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000298524586.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.918 kcal
(2) G-P(sol) polarization free energy of solvation -68.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.171 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.899 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds