Wall clock time and date at job start Mon Mar 30 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47051 * 2 1 4 4 N 1.46901 * 109.47481 * 119.99764 * 2 1 3 5 5 C 1.46900 * 110.99829 * 275.00363 * 4 2 1 6 6 C 1.50697 * 109.46807 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00388 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00112 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00598 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99797 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47386 * 89.99652 * 10 8 6 12 12 H 1.48501 * 109.46860 * 209.99803 * 10 8 6 13 13 H 1.48506 * 109.46804 * 329.99415 * 10 8 6 14 14 C 1.52997 * 109.47274 * 240.00292 * 2 1 3 15 15 H 1.09002 * 109.72362 * 185.56813 * 14 2 1 16 16 O 1.43026 * 109.68861 * 306.12321 * 14 2 1 17 17 C 1.43042 * 114.23559 * 171.81580 * 16 14 2 18 18 C 1.53432 * 109.08964 * 288.73152 * 17 16 14 19 19 C 1.51408 * 107.90605 * 47.42201 * 18 17 16 20 20 S 1.75516 * 126.27368 * 164.55556 * 19 18 17 21 21 C 1.75809 * 91.03344 * 179.97438 * 20 19 18 22 22 C 1.33064 * 109.61770 * 0.02562 * 21 20 19 23 23 C 1.34870 * 123.68107 * 344.54138 * 19 18 17 24 24 H 1.08998 * 109.47447 * 299.99914 * 1 2 3 25 25 H 1.08996 * 109.47157 * 60.00396 * 1 2 3 26 26 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.00906 * 110.99681 * 38.95287 * 4 2 1 28 28 H 1.09001 * 109.47253 * 299.99517 * 5 4 2 29 29 H 1.09002 * 109.47265 * 59.99853 * 5 4 2 30 30 H 0.96993 * 120.00640 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.53341 * 48.61514 * 17 16 14 32 32 H 1.09004 * 109.53812 * 168.84867 * 17 16 14 33 33 H 1.09000 * 109.77533 * 167.02491 * 18 17 16 34 34 H 1.09006 * 109.77002 * 287.76990 * 18 17 16 35 35 H 1.08001 * 125.18520 * 180.02562 * 21 20 19 36 36 H 1.08000 * 122.18559 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5874 -0.5216 3.5560 7 1 2.8372 -1.5696 3.4796 8 6 2.7315 0.1354 4.7595 9 7 3.1717 -0.5142 5.8149 10 14 2.3002 1.9482 4.8915 11 1 0.8710 2.0908 5.2683 12 1 3.1514 2.5852 5.9282 13 1 2.5356 2.6095 3.5828 14 6 2.0400 -0.7212 -1.2492 15 1 3.1254 -0.8106 -1.2050 16 8 1.4522 -2.0227 -1.3281 17 6 1.7164 -2.7131 -2.5526 18 6 0.9247 -2.0467 -3.6854 19 6 1.1373 -0.5510 -3.5846 20 16 0.7819 0.6346 -4.8291 21 6 1.3422 1.9386 -3.7915 22 6 1.7462 1.4399 -2.6259 23 6 1.6397 0.0612 -2.4929 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.4496 -1.4979 1.4101 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 3.2728 -0.0521 6.6616 31 1 2.7823 -2.6649 -2.7755 32 1 1.4096 -3.7547 -2.4573 33 1 1.2857 -2.4064 -4.6489 34 1 -0.1355 -2.2772 -3.5794 35 1 1.3564 2.9847 -4.0594 36 1 2.1308 2.0661 -1.8345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298524586.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:52 Heat of formation + Delta-G solvation = -33.898965 kcal Electronic energy + Delta-G solvation = -18338.792981 eV Core-core repulsion = 15527.539108 eV Total energy + Delta-G solvation = -2811.253873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00099 -37.70917 -37.39464 -34.86646 -33.29653 -32.03878 -29.69011 -28.21763 -26.80979 -25.10044 -23.33337 -22.68621 -21.93834 -19.21781 -18.93260 -18.28625 -17.56538 -16.85116 -16.29346 -15.91850 -15.64213 -15.58913 -15.18712 -14.70674 -14.58938 -14.36738 -13.86319 -13.63424 -13.53489 -13.25609 -13.05795 -12.86337 -12.59140 -12.46110 -12.29313 -12.00992 -11.83759 -11.72971 -11.54212 -11.38487 -10.80967 -10.50683 -9.50321 -9.30552 -9.06552 -8.28662 -6.32923 0.01649 0.67674 1.02030 1.35124 1.37115 1.48361 1.66892 2.35016 2.86024 3.05329 3.37711 3.70955 3.85294 3.94464 4.10925 4.25451 4.29548 4.37949 4.41608 4.51412 4.65563 4.76159 4.78343 4.84270 4.88366 4.94259 5.00487 5.13468 5.16029 5.27288 5.38524 5.51061 5.54677 5.97580 6.29294 6.58932 6.67543 6.78321 7.31860 8.88329 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031046 B = 0.004713 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.675996 B = 5939.954917 C = 6588.938512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.095 3.905 3 H 0.085 0.915 4 N -0.679 5.679 5 C 0.177 3.823 6 C -0.527 4.527 7 H 0.036 0.964 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.951 3.049 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.248 1.248 14 C 0.174 3.826 15 H 0.064 0.936 16 O -0.384 6.384 17 C 0.057 3.943 18 C -0.077 4.077 19 C -0.190 4.190 20 S 0.124 5.876 21 C -0.213 4.213 22 C -0.137 4.137 23 C -0.147 4.147 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.339 0.661 28 H 0.026 0.974 29 H -0.013 1.013 30 H 0.267 0.733 31 H 0.055 0.945 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.188 0.812 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 3.086 -24.780 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 H 0.103 0.897 4 N -0.309 5.309 5 C 0.048 3.952 6 C -0.565 4.565 7 H 0.054 0.946 8 C -0.189 4.189 9 N -0.589 5.589 10 Si 0.774 3.226 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.172 1.172 14 C 0.113 3.887 15 H 0.081 0.919 16 O -0.303 6.303 17 C -0.021 4.021 18 C -0.116 4.116 19 C -0.307 4.307 20 S 0.390 5.610 21 C -0.348 4.348 22 C -0.167 4.167 23 C -0.160 4.160 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.157 0.843 28 H 0.044 0.956 29 H 0.004 0.996 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.206 0.794 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.317 3.087 -26.118 27.048 hybrid contribution -0.108 0.850 2.130 2.296 sum -6.425 3.938 -23.988 25.144 Atomic orbital electron populations 1.22218 0.96251 1.02194 1.01261 1.21558 0.93885 0.96880 0.89216 0.89745 1.60411 1.56887 1.09807 1.03830 1.19774 0.94123 0.92723 0.88568 1.21343 1.43634 0.97464 0.94105 0.94608 1.25875 0.94535 1.03501 0.94994 1.70052 1.48202 1.38947 1.01677 0.85667 0.78700 0.79294 0.78968 1.19186 1.20595 1.17208 1.20862 0.95969 0.81779 0.90071 0.91858 1.87983 1.75431 1.28712 1.38141 1.22851 0.99019 0.96954 0.83229 1.21035 1.02570 0.87057 1.00956 1.25033 1.07320 1.00900 0.97474 1.83834 1.63720 0.96333 1.17129 1.25716 1.07737 1.03888 0.97490 1.20034 1.03501 0.94063 0.99055 1.20209 1.04529 0.94495 0.96814 0.93708 0.91714 0.92228 0.84314 0.95601 0.99583 0.92366 0.92650 0.86249 0.87402 0.88947 0.79446 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 8.77 71.98 0.63 -4.38 16 2 C 0.10 3.22 2.28 44.91 0.10 3.33 16 3 H 0.08 2.81 6.72 -2.38 -0.02 2.79 16 4 N -0.68 -28.96 6.20 -495.58 -3.07 -32.03 16 5 C 0.18 8.61 4.31 85.56 0.37 8.98 16 6 C -0.53 -31.28 9.87 25.60 0.25 -31.03 16 7 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 8 C 0.01 0.49 5.47 84.66 0.46 0.96 16 9 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 10 Si 0.95 44.50 27.47 68.60 1.88 46.39 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 14 C 0.17 5.25 2.92 30.36 0.09 5.34 16 15 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 16 O -0.38 -11.35 9.43 -148.98 -1.40 -12.75 16 17 C 0.06 1.20 6.83 72.13 0.49 1.69 16 18 C -0.08 -1.36 6.55 30.22 0.20 -1.16 16 19 C -0.19 -4.16 6.44 25.14 0.16 -4.00 16 20 S 0.12 2.21 23.32 -56.49 -1.32 0.90 16 21 C -0.21 -3.99 11.21 66.66 0.75 -3.24 16 22 C -0.14 -3.16 9.42 21.27 0.20 -2.96 16 23 C -0.15 -3.77 4.45 -19.97 -0.09 -3.86 16 24 H 0.04 1.45 7.45 -2.39 -0.02 1.44 16 25 H 0.06 1.82 7.37 -2.39 -0.02 1.81 16 26 H 0.06 1.90 7.53 -2.38 -0.02 1.88 16 27 H 0.34 14.78 8.46 -89.69 -0.76 14.02 16 28 H 0.03 1.26 7.11 -2.39 -0.02 1.24 16 29 H -0.01 -0.64 6.86 -2.39 -0.02 -0.65 16 30 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.14 3.15 7.27 -2.91 -0.02 3.12 16 Total: -1.00 -68.09 303.50 0.27 -67.82 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.27 Total: 19.87 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 3.62 Total: -30.33 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -2.78 Total: -91.89 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.40 Total: -12.75 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.32 Total: 0.90 kcal Total: -68.09 0.27 -67.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298524586.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.918 kcal (2) G-P(sol) polarization free energy of solvation -68.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds