Wall clock time and date at job start Mon Mar 30 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00348 * 4 2 1 6 6 C 1.50703 * 109.47196 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00131 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99999 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00334 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46780 * 90.00053 * 10 8 6 12 12 H 1.48496 * 109.47686 * 210.00222 * 10 8 6 13 13 H 1.48501 * 109.47027 * 330.00466 * 10 8 6 14 14 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 15 15 H 1.09001 * 109.68641 * 175.54035 * 14 2 1 16 16 O 1.43010 * 109.69204 * 55.00034 * 14 2 1 17 17 C 1.43045 * 114.24843 * 188.22548 * 16 14 2 18 18 C 1.53427 * 109.08433 * 71.25486 * 17 16 14 19 19 C 1.51408 * 107.90463 * 312.54680 * 18 17 16 20 20 S 1.75511 * 126.27114 * 195.55435 * 19 18 17 21 21 C 1.75808 * 91.03311 * 179.97438 * 20 19 18 22 22 C 1.33067 * 109.61669 * 0.02562 * 21 20 19 23 23 C 1.34868 * 123.68128 * 15.50846 * 19 18 17 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.00902 * 110.99924 * 208.95338 * 4 2 1 28 28 H 1.09007 * 109.47248 * 299.99411 * 5 4 2 29 29 H 1.08990 * 109.47767 * 59.99672 * 5 4 2 30 30 H 0.96999 * 120.00000 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.53978 * 191.14515 * 17 16 14 32 32 H 1.09007 * 109.52784 * 311.29805 * 17 16 14 33 33 H 1.09002 * 109.77172 * 72.14366 * 18 17 16 34 34 H 1.09000 * 109.77973 * 192.94205 * 18 17 16 35 35 H 1.08006 * 125.19399 * 180.02562 * 21 20 19 36 36 H 1.07998 * 122.18745 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5872 -0.5217 -3.5561 7 1 2.8368 -1.5697 -3.4797 8 6 2.7304 0.1351 -4.7598 9 7 2.4269 1.4114 -4.8527 10 14 3.3568 -0.7874 -6.2585 11 1 2.2077 -1.3704 -6.9968 12 1 4.0909 0.1501 -7.1458 13 1 4.2695 -1.8753 -5.8243 14 6 2.0400 -0.7213 1.2492 15 1 3.1270 -0.7930 1.2138 16 8 1.4725 -2.0324 1.3141 17 6 1.7355 -2.7266 2.5368 18 6 0.9222 -2.0801 3.6657 19 6 1.1129 -0.5807 3.5769 20 16 0.7292 0.5906 4.8265 21 6 1.2795 1.9100 3.8032 22 6 1.7000 1.4257 2.6373 23 6 1.6159 0.0465 2.4941 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.9172 -1.1205 -1.0287 28 1 1.0870 0.6164 -2.5525 29 1 2.7587 1.0462 -2.1183 30 1 2.5280 1.8736 -5.6995 31 1 1.4463 -3.7723 2.4318 32 1 2.7986 -2.6641 2.7698 33 1 -0.1332 -2.3252 3.5469 34 1 1.2789 -2.4407 4.6305 35 1 1.2768 2.9544 4.0788 36 1 2.0822 2.0632 1.8537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298524589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:55 Heat of formation + Delta-G solvation = -14.734635 kcal Electronic energy + Delta-G solvation = -18278.746446 eV Core-core repulsion = 15468.323601 eV Total energy + Delta-G solvation = -2810.422845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95750 -36.48166 -35.87785 -32.94266 -32.05618 -30.31652 -28.35974 -26.23890 -25.51475 -24.08201 -21.95700 -21.65195 -20.07677 -18.21905 -17.42567 -16.67457 -16.35454 -15.19005 -15.08877 -14.68750 -14.50816 -14.23429 -13.65554 -13.37698 -13.32827 -12.55182 -12.39660 -12.15732 -12.05713 -11.87489 -11.48939 -11.32312 -11.14721 -11.10788 -10.80304 -10.66893 -10.43861 -10.26382 -9.79485 -9.48927 -9.12133 -8.61642 -8.43897 -8.35139 -7.20721 -5.99432 -4.00715 0.92065 1.54707 1.90930 2.63018 3.35345 3.40847 3.44880 3.86774 4.45878 4.56739 4.66860 4.88690 5.07867 5.12178 5.23738 5.35208 5.36604 5.38611 5.52756 5.60483 5.66817 5.77967 5.89317 6.07098 6.21488 6.28656 6.39813 6.47566 6.61065 6.95277 7.27705 7.36704 7.45659 7.84522 8.18242 8.46911 8.67293 9.09062 9.64027 11.11788 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.035312 B = 0.004280 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.741686 B = 6540.822438 C = 7077.276432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.099 3.901 3 H 0.047 0.953 4 N -0.677 5.677 5 C 0.194 3.806 6 C -0.511 4.511 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.155 3.845 15 H 0.069 0.931 16 O -0.349 6.349 17 C 0.062 3.938 18 C -0.080 4.080 19 C -0.178 4.178 20 S 0.086 5.914 21 C -0.216 4.216 22 C -0.114 4.114 23 C -0.127 4.127 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.329 0.671 28 H 0.029 0.971 29 H -0.016 1.016 30 H 0.261 0.739 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.165 0.835 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -2.753 20.451 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.012 4.012 3 H 0.065 0.935 4 N -0.308 5.308 5 C 0.067 3.933 6 C -0.550 4.550 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.095 3.905 15 H 0.086 0.914 16 O -0.266 6.266 17 C -0.017 4.017 18 C -0.119 4.119 19 C -0.295 4.295 20 S 0.352 5.648 21 C -0.351 4.351 22 C -0.145 4.145 23 C -0.140 4.140 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.047 0.953 29 H 0.002 0.998 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.182 0.818 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.286 -2.960 21.486 21.936 hybrid contribution 1.774 0.627 -1.724 2.551 sum -1.512 -2.333 19.762 19.957 Atomic orbital electron populations 1.21614 0.94545 1.02344 1.00051 1.21473 0.96896 0.94623 0.88169 0.93520 1.60664 1.32485 1.34439 1.03248 1.19617 0.96488 0.90120 0.87048 1.21200 1.43037 0.96764 0.93991 0.91910 1.24984 0.95739 0.94884 0.98981 1.69967 1.49116 1.09003 1.25817 0.86489 0.78892 0.79457 0.82506 1.20630 1.21378 1.19850 1.21322 0.96090 0.81983 0.91143 0.91358 1.88167 1.76139 1.27097 1.35231 1.22623 0.98178 0.96444 0.84434 1.20974 1.02459 0.88215 1.00283 1.24686 1.07975 0.99512 0.97328 1.83934 1.64716 0.97363 1.18792 1.25368 1.09104 1.02397 0.98222 1.19980 1.02034 0.94435 0.98000 1.20265 1.02967 0.93895 0.96868 0.94031 0.92708 0.91636 0.85434 0.95266 0.99779 0.92985 0.88106 0.92950 0.89434 0.89904 0.81799 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.03 37.16 0.34 -1.99 16 2 C 0.10 1.82 2.29 -67.72 -0.16 1.67 16 3 H 0.05 0.88 6.77 -51.93 -0.35 0.52 16 4 N -0.68 -14.90 6.25 -107.99 -0.67 -15.58 16 5 C 0.19 5.14 5.24 -4.97 -0.03 5.11 16 6 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 7 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 10 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.16 2.41 2.63 -27.09 -0.07 2.34 16 15 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 16 O -0.35 -5.44 9.45 -35.23 -0.33 -5.78 16 17 C 0.06 0.70 6.83 37.38 0.26 0.96 16 18 C -0.08 -0.83 6.55 -27.31 -0.18 -1.01 16 19 C -0.18 -2.22 6.44 -35.16 -0.23 -2.45 16 20 S 0.09 0.94 23.32 -107.50 -2.51 -1.57 16 21 C -0.22 -2.43 11.21 28.94 0.32 -2.11 16 22 C -0.11 -1.49 9.36 -41.13 -0.38 -1.88 16 23 C -0.13 -1.77 4.41 -104.78 -0.46 -2.23 16 24 H 0.04 0.68 7.27 -51.93 -0.38 0.30 16 25 H 0.05 1.07 7.45 -51.93 -0.39 0.68 16 26 H 0.06 1.23 7.57 -51.93 -0.39 0.84 16 27 H 0.33 6.94 8.28 -39.29 -0.33 6.61 16 28 H 0.03 0.84 7.44 -51.93 -0.39 0.45 16 29 H -0.02 -0.43 8.05 -51.93 -0.42 -0.85 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.55 8.09 -51.92 -0.42 0.13 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.14 1.79 7.29 -52.49 -0.38 1.41 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -31.19 306.78 -9.28 -40.47 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.10 Total: 2.38 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.01 Total: -15.09 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.06 Total: -41.95 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.33 Total: -5.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.19 -9.28 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298524589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.735 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds