Wall clock time and date at job start Mon Mar 30 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00348 * 4 2 1 6 6 C 1.50703 * 109.47196 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00131 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99999 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00334 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46780 * 90.00053 * 10 8 6 12 12 H 1.48496 * 109.47686 * 210.00222 * 10 8 6 13 13 H 1.48501 * 109.47027 * 330.00466 * 10 8 6 14 14 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 15 15 H 1.09001 * 109.68641 * 175.54035 * 14 2 1 16 16 O 1.43010 * 109.69204 * 55.00034 * 14 2 1 17 17 C 1.43045 * 114.24843 * 188.22548 * 16 14 2 18 18 C 1.53427 * 109.08433 * 71.25486 * 17 16 14 19 19 C 1.51408 * 107.90463 * 312.54680 * 18 17 16 20 20 S 1.75511 * 126.27114 * 195.55435 * 19 18 17 21 21 C 1.75808 * 91.03311 * 179.97438 * 20 19 18 22 22 C 1.33067 * 109.61669 * 0.02562 * 21 20 19 23 23 C 1.34868 * 123.68128 * 15.50846 * 19 18 17 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.00902 * 110.99924 * 208.95338 * 4 2 1 28 28 H 1.09007 * 109.47248 * 299.99411 * 5 4 2 29 29 H 1.08990 * 109.47767 * 59.99672 * 5 4 2 30 30 H 0.96999 * 120.00000 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.53978 * 191.14515 * 17 16 14 32 32 H 1.09007 * 109.52784 * 311.29805 * 17 16 14 33 33 H 1.09002 * 109.77172 * 72.14366 * 18 17 16 34 34 H 1.09000 * 109.77973 * 192.94205 * 18 17 16 35 35 H 1.08006 * 125.19399 * 180.02562 * 21 20 19 36 36 H 1.07998 * 122.18745 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5872 -0.5217 -3.5561 7 1 2.8368 -1.5697 -3.4797 8 6 2.7304 0.1351 -4.7598 9 7 2.4269 1.4114 -4.8527 10 14 3.3568 -0.7874 -6.2585 11 1 2.2077 -1.3704 -6.9968 12 1 4.0909 0.1501 -7.1458 13 1 4.2695 -1.8753 -5.8243 14 6 2.0400 -0.7213 1.2492 15 1 3.1270 -0.7930 1.2138 16 8 1.4725 -2.0324 1.3141 17 6 1.7355 -2.7266 2.5368 18 6 0.9222 -2.0801 3.6657 19 6 1.1129 -0.5807 3.5769 20 16 0.7292 0.5906 4.8265 21 6 1.2795 1.9100 3.8032 22 6 1.7000 1.4257 2.6373 23 6 1.6159 0.0465 2.4941 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.9172 -1.1205 -1.0287 28 1 1.0870 0.6164 -2.5525 29 1 2.7587 1.0462 -2.1183 30 1 2.5280 1.8736 -5.6995 31 1 1.4463 -3.7723 2.4318 32 1 2.7986 -2.6641 2.7698 33 1 -0.1332 -2.3252 3.5469 34 1 1.2789 -2.4407 4.6305 35 1 1.2768 2.9544 4.0788 36 1 2.0822 2.0632 1.8537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298524589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:55 Heat of formation + Delta-G solvation = -35.214457 kcal Electronic energy + Delta-G solvation = -18279.634518 eV Core-core repulsion = 15468.323601 eV Total energy + Delta-G solvation = -2811.310917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03906 -37.61450 -37.38529 -34.91093 -33.22599 -31.88212 -29.59318 -28.16496 -26.75587 -25.18524 -23.72989 -22.70445 -21.61793 -19.28136 -18.65894 -18.22571 -17.71332 -16.80660 -16.44666 -16.07237 -15.74146 -15.51064 -14.96819 -14.73164 -14.49182 -14.20917 -13.73593 -13.56022 -13.33311 -13.15521 -13.02727 -12.85641 -12.75506 -12.42048 -12.35899 -12.08826 -12.02489 -11.67519 -11.48080 -11.24626 -10.64381 -10.53946 -9.51679 -9.28527 -9.07398 -8.21048 -6.31883 -0.00700 0.65955 0.99245 1.42044 1.44275 1.55392 1.63210 2.41476 2.79666 3.12276 3.44144 3.67913 3.80487 3.94141 4.06694 4.16133 4.28460 4.38339 4.45174 4.48574 4.67427 4.77702 4.84502 4.88703 4.99914 5.02006 5.11420 5.14915 5.27307 5.32717 5.42072 5.48636 5.64672 6.04716 6.27267 6.48573 6.74792 6.91067 7.38976 8.90668 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.035312 B = 0.004280 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.741686 B = 6540.822438 C = 7077.276432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.098 3.902 3 H 0.040 0.960 4 N -0.677 5.677 5 C 0.211 3.789 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.973 3.027 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.165 3.835 15 H 0.067 0.933 16 O -0.375 6.375 17 C 0.055 3.945 18 C -0.078 4.078 19 C -0.186 4.186 20 S 0.132 5.868 21 C -0.214 4.214 22 C -0.138 4.138 23 C -0.149 4.149 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.334 0.666 28 H 0.000 1.000 29 H -0.039 1.039 30 H 0.265 0.735 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.188 0.812 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -3.885 21.948 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.013 4.013 3 H 0.057 0.943 4 N -0.308 5.308 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.797 3.203 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.187 1.187 14 C 0.105 3.895 15 H 0.085 0.915 16 O -0.294 6.294 17 C -0.023 4.023 18 C -0.117 4.117 19 C -0.304 4.304 20 S 0.398 5.602 21 C -0.349 4.349 22 C -0.168 4.168 23 C -0.163 4.163 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.018 0.982 29 H -0.022 1.022 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.205 0.795 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.207 -4.106 23.014 23.597 hybrid contribution 1.701 0.992 -2.057 2.847 sum -1.506 -3.114 20.958 21.241 Atomic orbital electron populations 1.21480 0.94347 1.01725 0.99748 1.21490 0.96906 0.94541 0.88321 0.94255 1.60532 1.32743 1.33773 1.03742 1.19238 0.93931 0.89941 0.88558 1.21546 1.43569 0.97009 0.95138 0.91814 1.25945 0.95608 0.95751 1.02329 1.70096 1.49830 1.10681 1.26892 0.85327 0.78503 0.78280 0.78145 1.19953 1.20616 1.18674 1.20957 0.95756 0.82400 0.90401 0.91548 1.88105 1.76448 1.27043 1.37761 1.22909 0.99021 0.97097 0.83273 1.21060 1.02664 0.86788 1.01172 1.25065 1.06803 1.01044 0.97468 1.83782 1.63363 0.95912 1.17124 1.25711 1.07641 1.03941 0.97638 1.20008 1.03653 0.94282 0.98880 1.20117 1.05075 0.94266 0.96800 0.92194 0.95000 0.92269 0.84873 0.98195 1.02171 0.92645 0.86050 0.92238 0.88962 0.87113 0.79506 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 9.03 71.98 0.65 -3.65 16 2 C 0.10 3.71 2.29 44.92 0.10 3.81 16 3 H 0.04 1.56 6.77 -2.39 -0.02 1.55 16 4 N -0.68 -30.82 6.25 -495.58 -3.10 -33.92 16 5 C 0.21 11.70 5.24 85.56 0.45 12.15 16 6 C -0.53 -31.33 9.32 25.60 0.24 -31.09 16 7 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 10 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 C 0.17 5.17 2.63 30.36 0.08 5.25 16 15 H 0.07 2.04 8.04 -2.39 -0.02 2.03 16 16 O -0.37 -11.47 9.45 -148.98 -1.41 -12.88 16 17 C 0.05 1.13 6.83 72.13 0.49 1.63 16 18 C -0.08 -1.40 6.55 30.22 0.20 -1.20 16 19 C -0.19 -4.26 6.44 25.14 0.16 -4.10 16 20 S 0.13 2.49 23.32 -56.49 -1.32 1.18 16 21 C -0.21 -4.42 11.21 66.66 0.75 -3.67 16 22 C -0.14 -3.54 9.36 21.27 0.20 -3.34 16 23 C -0.15 -4.06 4.41 -19.97 -0.09 -4.15 16 24 H 0.06 1.99 7.27 -2.39 -0.02 1.97 16 25 H 0.03 1.29 7.45 -2.39 -0.02 1.28 16 26 H 0.06 2.26 7.57 -2.39 -0.02 2.24 16 27 H 0.33 14.49 8.28 -89.69 -0.74 13.74 16 28 H 0.00 0.00 7.44 -2.38 -0.02 -0.02 16 29 H -0.04 -2.32 8.05 -2.39 -0.02 -2.34 16 30 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.14 8.09 -2.38 -0.02 1.12 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.13 3.51 7.29 -2.91 -0.02 3.48 16 Total: -1.00 -67.61 306.78 0.52 -67.10 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.34 Total: 16.39 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 3.69 Total: -27.81 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.81 Total: -91.07 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.41 Total: -12.88 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.32 Total: 1.18 kcal Total: -67.61 0.52 -67.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298524589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.881 kcal (2) G-P(sol) polarization free energy of solvation -67.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds