Wall clock time and date at job start Mon Mar 30 2020 00:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47122 * 2 1 4 4 N 1.46902 * 109.47154 * 240.00056 * 2 1 3 5 5 C 1.46898 * 111.00137 * 85.00016 * 4 2 1 6 6 C 1.50698 * 109.47194 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99714 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00201 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99859 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47044 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46930 * 119.99609 * 10 8 6 13 13 H 1.48495 * 109.47035 * 239.99703 * 10 8 6 14 14 C 1.53002 * 109.47017 * 120.00114 * 2 1 3 15 15 H 1.09006 * 109.68466 * 300.53913 * 14 2 1 16 16 O 1.43013 * 109.72552 * 61.10023 * 14 2 1 17 17 C 1.43042 * 114.24618 * 171.80588 * 16 14 2 18 18 C 1.53436 * 109.07764 * 288.72911 * 17 16 14 19 19 C 1.51416 * 107.90093 * 47.45685 * 18 17 16 20 20 S 1.75513 * 126.27028 * 164.48065 * 19 18 17 21 21 C 1.75814 * 91.03094 * 179.86628 * 20 19 18 22 22 C 1.33068 * 109.61523 * 0.29389 * 21 20 19 23 23 C 1.34872 * 123.67998 * 344.50215 * 19 18 17 24 24 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47122 * 299.99893 * 1 2 3 26 26 H 1.08999 * 109.46777 * 60.00428 * 1 2 3 27 27 H 1.00908 * 110.99640 * 208.95333 * 4 2 1 28 28 H 1.08996 * 109.46946 * 300.00040 * 5 4 2 29 29 H 1.09003 * 109.46664 * 59.99715 * 5 4 2 30 30 H 0.96996 * 120.00146 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.53649 * 48.61197 * 17 16 14 32 32 H 1.08994 * 109.53707 * 168.85374 * 17 16 14 33 33 H 1.09002 * 109.77305 * 167.05236 * 18 17 16 34 34 H 1.08990 * 109.77719 * 287.80200 * 18 17 16 35 35 H 1.07997 * 125.19648 * 180.21709 * 21 20 19 36 36 H 1.08002 * 122.18713 * 179.90475 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5885 -0.5215 -3.5557 7 1 2.8389 -1.5693 -3.4791 8 6 2.7329 0.1356 -4.7592 9 7 2.4285 1.4116 -4.8523 10 14 3.3595 -0.7870 -6.2578 11 1 3.6280 -2.2010 -5.8920 12 1 2.3357 -0.7390 -7.3324 13 1 4.6134 -0.1542 -6.7400 14 6 2.0400 -0.7213 1.2493 15 1 1.6706 -0.2158 2.1416 16 8 1.5874 -2.0779 1.2419 17 6 2.1586 -2.8933 2.2691 18 6 3.6346 -3.1533 1.9403 19 6 4.2687 -1.8297 1.5680 20 16 5.9885 -1.4915 1.4769 21 6 5.6687 0.1709 1.0022 22 6 4.3550 0.3747 0.9468 23 6 3.5628 -0.7241 1.2544 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.9174 -1.1205 -1.0287 28 1 1.0871 0.6163 -2.5525 29 1 2.7588 1.0462 -2.1181 30 1 2.5297 1.8738 -5.6990 31 1 2.0837 -2.3785 3.2269 32 1 1.6242 -3.8418 2.3209 33 1 4.1384 -3.5714 2.8119 34 1 3.7092 -3.8473 1.1032 35 1 6.4233 0.9136 0.7894 36 1 3.9321 1.3309 0.6759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298524593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:58 Heat of formation + Delta-G solvation = -35.777577 kcal Electronic energy + Delta-G solvation = -18649.206006 eV Core-core repulsion = 15837.870670 eV Total energy + Delta-G solvation = -2811.335335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03232 -37.45080 -37.41055 -34.92076 -33.21003 -31.78632 -29.80446 -28.06318 -26.70740 -25.00081 -23.78828 -22.72732 -21.56902 -19.31512 -18.64155 -18.22816 -17.68285 -16.86888 -16.32102 -16.13389 -15.63387 -15.55633 -14.89837 -14.68486 -14.42993 -14.13320 -13.94669 -13.48765 -13.36180 -13.00953 -12.95143 -12.81064 -12.80187 -12.54862 -12.34400 -12.07468 -12.02454 -11.65697 -11.42865 -11.23776 -10.66273 -10.50139 -9.51496 -9.28455 -9.00450 -8.22515 -6.32683 -0.00578 0.66896 0.98815 1.38202 1.39210 1.53207 1.63085 2.39171 2.83520 3.10431 3.59285 3.69099 3.70433 3.91765 4.17747 4.25140 4.33328 4.37982 4.45217 4.48450 4.71897 4.73718 4.86780 4.90910 5.00921 5.06440 5.12476 5.18987 5.30178 5.35418 5.45244 5.49506 5.64007 6.05767 6.30200 6.52565 6.77912 6.91916 7.37966 8.89260 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.006300 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.613574 B = 4443.420244 C = 5097.240341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.090 3.910 3 H 0.038 0.962 4 N -0.670 5.670 5 C 0.214 3.786 6 C -0.532 4.532 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.969 3.031 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.276 1.276 14 C 0.165 3.835 15 H 0.091 0.909 16 O -0.375 6.375 17 C 0.059 3.941 18 C -0.080 4.080 19 C -0.182 4.182 20 S 0.127 5.873 21 C -0.221 4.221 22 C -0.136 4.136 23 C -0.159 4.159 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.329 0.671 28 H 0.001 0.999 29 H -0.044 1.044 30 H 0.265 0.735 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.180 0.820 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 -6.540 18.026 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.020 4.020 3 H 0.056 0.944 4 N -0.301 5.301 5 C 0.086 3.914 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.202 1.202 14 C 0.105 3.895 15 H 0.108 0.892 16 O -0.293 6.293 17 C -0.019 4.019 18 C -0.119 4.119 19 C -0.300 4.300 20 S 0.393 5.607 21 C -0.356 4.356 22 C -0.166 4.166 23 C -0.172 4.172 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.146 0.854 28 H 0.019 0.981 29 H -0.026 1.026 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.198 0.802 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.766 -7.541 17.848 19.953 hybrid contribution 0.092 1.738 -1.057 2.037 sum 4.859 -5.803 16.791 18.417 Atomic orbital electron populations 1.21636 0.93623 1.02276 1.00889 1.21594 0.96952 0.94495 0.88966 0.94403 1.60550 1.32573 1.33326 1.03688 1.19188 0.93697 0.89846 0.88626 1.21535 1.43367 0.96727 0.95361 0.92504 1.25899 0.95651 0.95759 1.02173 1.70089 1.49845 1.10575 1.26813 0.85344 0.78009 0.78825 0.78493 1.18959 1.20129 1.20168 1.21117 0.86699 0.84161 0.97531 0.89153 1.88094 1.66421 1.20329 1.54496 1.22889 0.91982 0.96441 0.90557 1.21094 0.96545 0.91041 1.03242 1.25114 0.96531 1.00210 1.08145 1.83721 1.03959 1.05851 1.67177 1.25667 0.99773 1.00521 1.09666 1.19989 0.93427 1.00007 1.03205 1.20285 0.97827 0.93678 1.05360 0.91967 0.90440 0.94775 0.85352 0.98106 1.02599 0.92644 0.91442 0.85940 0.86989 0.89669 0.80222 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.28 71.98 0.67 -3.70 16 2 C 0.09 3.38 2.21 44.91 0.10 3.48 16 3 H 0.04 1.48 6.94 -2.39 -0.02 1.47 16 4 N -0.67 -31.10 6.15 -495.58 -3.05 -34.15 16 5 C 0.21 12.03 5.24 85.56 0.45 12.47 16 6 C -0.53 -31.82 9.32 25.60 0.24 -31.58 16 7 H 0.06 3.38 7.81 -2.91 -0.02 3.35 16 8 C 0.00 0.19 5.46 84.65 0.46 0.65 16 9 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 10 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.17 5.02 2.74 30.36 0.08 5.10 16 15 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 16 O -0.37 -11.24 9.61 -148.98 -1.43 -12.67 16 17 C 0.06 1.20 6.83 72.13 0.49 1.70 16 18 C -0.08 -1.65 6.55 30.22 0.20 -1.46 16 19 C -0.18 -4.87 6.44 25.14 0.16 -4.71 16 20 S 0.13 3.08 23.32 -56.49 -1.32 1.76 16 21 C -0.22 -6.04 11.21 66.66 0.75 -5.29 16 22 C -0.14 -4.23 9.47 21.27 0.20 -4.03 16 23 C -0.16 -4.82 4.08 -19.97 -0.08 -4.90 16 24 H 0.06 2.19 7.72 -2.39 -0.02 2.17 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 1.31 7.45 -2.39 -0.02 1.29 16 27 H 0.33 15.41 7.13 -89.69 -0.64 14.77 16 28 H 0.00 0.05 7.44 -2.39 -0.02 0.03 16 29 H -0.04 -2.62 8.06 -2.39 -0.02 -2.64 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 32 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.13 4.10 7.37 -2.91 -0.02 4.07 16 Total: -1.00 -68.84 307.13 0.67 -68.17 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.44 Total: 18.73 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.72 Total: -32.26 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -2.76 Total: -91.57 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.43 Total: -12.67 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.32 Total: 1.76 kcal Total: -68.84 0.67 -68.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298524593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.392 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds