Wall clock time and date at job start Mon Mar 30 2020 00:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47584 * 2 1 4 4 C 1.50699 * 109.46951 * 239.99405 * 2 1 3 5 5 H 1.07998 * 120.00533 * 240.00068 * 4 2 1 6 6 C 1.37882 * 119.99747 * 60.00645 * 4 2 1 7 7 N 1.31513 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99698 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47269 * 60.00230 * 8 6 4 10 10 H 1.48500 * 109.47089 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47607 * 299.99668 * 8 6 4 12 12 N 1.46905 * 109.46973 * 119.99740 * 2 1 3 13 13 C 1.46896 * 111.00198 * 274.99683 * 12 2 1 14 14 C 1.52998 * 109.47235 * 179.97438 * 13 12 2 15 15 S 1.81405 * 109.47077 * 180.02562 * 14 13 12 16 16 O 1.42107 * 109.46928 * 289.05982 * 15 14 13 17 17 C 1.76199 * 102.99843 * 180.02562 * 15 14 13 18 18 C 1.38237 * 119.99920 * 90.00466 * 17 15 14 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00031 * 269.97647 * 17 15 14 23 23 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47111 * 300.00533 * 1 2 3 25 25 H 1.09000 * 109.47234 * 60.00148 * 1 2 3 26 26 H 0.96996 * 119.99912 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99925 * 151.04314 * 12 2 1 28 28 H 1.09003 * 109.47000 * 59.99708 * 13 12 2 29 29 H 1.08999 * 109.46883 * 300.00437 * 13 12 2 30 30 H 1.09003 * 109.46865 * 60.00755 * 14 13 12 31 31 H 1.08995 * 109.47073 * 299.99993 * 14 13 12 32 32 H 1.08005 * 120.00088 * 359.96860 * 18 17 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 36 36 H 1.07999 * 119.99990 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 1.8278 -2.5201 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8073 -1.1194 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 16 2.6719 0.5968 4.9916 16 8 3.7326 1.5232 4.8017 17 6 3.2737 -0.4337 6.2880 18 6 4.6341 -0.5483 6.5047 19 6 5.1062 -1.3572 7.5214 20 6 4.2179 -2.0506 8.3220 21 6 2.8577 -1.9397 8.1022 22 6 2.3854 -1.1270 7.0886 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1612 -3.4844 27 1 2.9173 -1.1206 1.0288 28 1 1.0871 0.6165 2.5525 29 1 2.7588 1.0462 2.1181 30 1 3.5903 -0.9271 3.3692 31 1 1.9182 -1.3564 3.8030 32 1 5.3282 -0.0067 5.8791 33 1 6.1691 -1.4472 7.6905 34 1 4.5868 -2.6822 9.1166 35 1 2.1638 -2.4849 8.7249 36 1 1.3225 -1.0374 6.9193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309806008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:02 Heat of formation + Delta-G solvation = -15.935795 kcal Electronic energy + Delta-G solvation = -17253.338787 eV Core-core repulsion = 14442.863856 eV Total energy + Delta-G solvation = -2810.474931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.13173 -36.16883 -35.66555 -33.01081 -31.27611 -31.13382 -30.45177 -27.09717 -25.17474 -23.17755 -22.82314 -21.88113 -19.80927 -18.23363 -16.99705 -16.48720 -15.74542 -15.42022 -15.09360 -14.91178 -14.44158 -14.34777 -13.70316 -13.62884 -13.24390 -12.88537 -12.77676 -12.14095 -12.01410 -11.72190 -11.38689 -11.24482 -11.04576 -10.79710 -10.76693 -10.35381 -10.22047 -10.12220 -9.81372 -9.40043 -9.17494 -8.84686 -8.47950 -8.31067 -7.31180 -6.02858 -4.09519 0.73610 1.15550 1.83318 2.73027 3.31255 3.35432 3.38292 3.48850 3.92281 4.40276 4.64794 4.72967 4.82416 5.16655 5.20033 5.23637 5.28288 5.33660 5.56720 5.63162 5.76822 5.94487 6.08264 6.10735 6.20765 6.22070 6.36081 6.70836 6.87279 7.13028 7.21388 7.49337 7.77124 7.88715 8.26422 8.36639 8.64331 9.00127 9.56319 11.03493 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.036635 B = 0.003422 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.115156 B = 8179.411138 C = 8341.454340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.208 3.792 3 H 0.002 0.998 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.079 3.921 14 C -0.442 4.442 15 S 1.324 4.676 16 O -0.855 6.855 17 C -0.456 4.456 18 C -0.055 4.055 19 C -0.138 4.138 20 C -0.090 4.090 21 C -0.139 4.139 22 C -0.044 4.044 23 H 0.032 0.968 24 H 0.006 0.994 25 H 0.081 0.919 26 H 0.262 0.738 27 H 0.330 0.670 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -3.827 21.515 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.101 3.899 3 H 0.019 0.981 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.052 4.052 14 C -0.580 4.580 15 S 1.521 4.479 16 O -0.850 6.850 17 C -0.552 4.552 18 C -0.074 4.074 19 C -0.157 4.157 20 C -0.108 4.108 21 C -0.158 4.158 22 C -0.063 4.063 23 H 0.051 0.949 24 H 0.025 0.975 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.357 -2.974 21.573 21.780 hybrid contribution 3.244 -1.066 -1.459 3.713 sum 2.887 -4.040 20.114 20.718 Atomic orbital electron populations 1.21720 0.97674 0.99414 0.99487 1.19149 0.92795 0.92433 0.85537 0.98069 1.21226 1.31623 1.12576 0.90511 0.92316 1.24919 0.95025 0.94998 0.99036 1.69881 1.36519 1.22818 1.23614 0.86570 0.79074 0.79771 0.82037 1.20165 1.21243 1.20371 1.60801 1.32089 1.32776 1.05866 1.21451 0.99764 0.93805 0.90171 1.27829 1.06678 1.12310 1.11176 1.69530 1.11742 0.81345 0.85263 1.93093 1.57865 1.50199 1.83890 1.27913 0.99499 1.13094 1.14655 1.21189 0.94996 0.94920 0.96272 1.21266 0.99903 0.98094 0.96449 1.21332 0.93753 0.97594 0.98162 1.21291 0.95685 0.99890 0.98955 1.20914 0.99347 0.93029 0.93060 0.94886 0.97512 0.90050 0.92822 0.85284 0.90685 0.95916 0.89926 0.86061 0.85601 0.85967 0.85905 0.85468 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.19 37.16 0.34 -2.73 16 2 C 0.21 5.36 2.60 -68.86 -0.18 5.18 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -14.53 8.59 -34.44 -0.30 -14.83 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.68 -14.77 6.30 -107.96 -0.68 -15.45 16 13 C 0.08 1.41 5.49 -3.83 -0.02 1.39 16 14 C -0.44 -6.10 6.14 37.16 0.23 -5.88 16 15 S 1.32 15.35 13.55 -107.50 -1.46 13.89 16 16 O -0.86 -15.22 16.90 -35.23 -0.60 -15.82 16 17 C -0.46 -5.13 5.61 -39.58 -0.22 -5.36 16 18 C -0.05 -0.69 9.44 -39.58 -0.37 -1.07 16 19 C -0.14 -1.44 10.05 -39.58 -0.40 -1.84 16 20 C -0.09 -0.80 10.05 -39.58 -0.40 -1.19 16 21 C -0.14 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.04 -0.38 9.75 -39.58 -0.39 -0.77 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 25 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.33 7.13 8.22 -39.29 -0.32 6.81 16 28 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 29 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 30 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.13 1.76 7.45 -52.48 -0.39 1.37 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -35.10 316.27 -9.68 -44.77 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.12 Total: 3.34 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -2.20 Total: -26.98 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.05 Total: -40.45 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.60 Total: -15.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 15.35 SS G_CDS: -1.46 Total: 13.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.10 -9.68 -44.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309806008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.839 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds