Wall clock time and date at job start Mon Mar 30 2020 00:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47584 * 2 1 4 4 C 1.50699 * 109.46951 * 239.99405 * 2 1 3 5 5 H 1.07998 * 120.00533 * 240.00068 * 4 2 1 6 6 C 1.37882 * 119.99747 * 60.00645 * 4 2 1 7 7 N 1.31513 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99698 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47269 * 60.00230 * 8 6 4 10 10 H 1.48500 * 109.47089 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47607 * 299.99668 * 8 6 4 12 12 N 1.46905 * 109.46973 * 119.99740 * 2 1 3 13 13 C 1.46896 * 111.00198 * 274.99683 * 12 2 1 14 14 C 1.52998 * 109.47235 * 179.97438 * 13 12 2 15 15 S 1.81405 * 109.47077 * 180.02562 * 14 13 12 16 16 O 1.42107 * 109.46928 * 289.05982 * 15 14 13 17 17 C 1.76199 * 102.99843 * 180.02562 * 15 14 13 18 18 C 1.38237 * 119.99920 * 90.00466 * 17 15 14 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00031 * 269.97647 * 17 15 14 23 23 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47111 * 300.00533 * 1 2 3 25 25 H 1.09000 * 109.47234 * 60.00148 * 1 2 3 26 26 H 0.96996 * 119.99912 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99925 * 151.04314 * 12 2 1 28 28 H 1.09003 * 109.47000 * 59.99708 * 13 12 2 29 29 H 1.08999 * 109.46883 * 300.00437 * 13 12 2 30 30 H 1.09003 * 109.46865 * 60.00755 * 14 13 12 31 31 H 1.08995 * 109.47073 * 299.99993 * 14 13 12 32 32 H 1.08005 * 120.00088 * 359.96860 * 18 17 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 36 36 H 1.07999 * 119.99990 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 1.8278 -2.5201 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8073 -1.1194 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 16 2.6719 0.5968 4.9916 16 8 3.7326 1.5232 4.8017 17 6 3.2737 -0.4337 6.2880 18 6 4.6341 -0.5483 6.5047 19 6 5.1062 -1.3572 7.5214 20 6 4.2179 -2.0506 8.3220 21 6 2.8577 -1.9397 8.1022 22 6 2.3854 -1.1270 7.0886 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1612 -3.4844 27 1 2.9173 -1.1206 1.0288 28 1 1.0871 0.6165 2.5525 29 1 2.7588 1.0462 2.1181 30 1 3.5903 -0.9271 3.3692 31 1 1.9182 -1.3564 3.8030 32 1 5.3282 -0.0067 5.8791 33 1 6.1691 -1.4472 7.6905 34 1 4.5868 -2.6822 9.1166 35 1 2.1638 -2.4849 8.7249 36 1 1.3225 -1.0374 6.9193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309806008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:02 Heat of formation + Delta-G solvation = -41.095514 kcal Electronic energy + Delta-G solvation = -17254.429794 eV Core-core repulsion = 14442.863856 eV Total energy + Delta-G solvation = -2811.565938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86067 -37.95475 -36.92183 -34.92718 -32.26081 -31.98342 -31.86356 -28.81068 -27.27469 -24.12157 -23.56041 -23.20834 -21.74772 -19.13195 -18.50614 -17.93183 -17.02011 -16.67450 -16.35916 -16.01084 -15.95674 -15.45270 -15.00583 -14.88180 -14.52391 -14.31783 -13.77551 -13.67686 -13.45047 -12.99024 -12.89762 -12.74713 -12.53480 -12.39538 -12.20772 -12.08823 -12.07304 -11.91172 -11.17978 -10.89076 -10.59076 -10.21048 -9.91190 -9.39955 -9.13458 -8.15452 -6.30294 -0.08059 0.41808 0.89469 1.40454 1.42221 1.50092 1.77934 2.39602 2.69295 2.93527 3.12625 3.71104 3.90825 3.93211 4.08311 4.17037 4.20347 4.51490 4.56391 4.58847 4.77868 4.84919 4.91267 5.07058 5.08042 5.11808 5.22735 5.33280 5.40084 5.49824 5.50567 5.64343 5.86357 6.01713 6.23060 6.41162 6.71352 6.93159 7.39959 8.89931 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.036635 B = 0.003422 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.115156 B = 8179.411138 C = 8341.454340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.209 3.791 3 H -0.035 1.035 4 C -0.545 4.545 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.678 5.678 13 C 0.075 3.925 14 C -0.440 4.440 15 S 1.395 4.605 16 O -0.922 6.922 17 C -0.473 4.473 18 C -0.090 4.090 19 C -0.152 4.152 20 C -0.089 4.089 21 C -0.138 4.138 22 C -0.039 4.039 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.264 0.736 27 H 0.327 0.673 28 H 0.097 0.903 29 H -0.005 1.005 30 H 0.063 0.937 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -5.822 23.420 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 H -0.018 1.018 4 C -0.583 4.583 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.309 5.309 13 C -0.056 4.056 14 C -0.576 4.576 15 S 1.594 4.406 16 O -0.918 6.918 17 C -0.571 4.571 18 C -0.109 4.109 19 C -0.171 4.171 20 C -0.107 4.107 21 C -0.156 4.156 22 C -0.058 4.058 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.115 0.885 29 H 0.014 0.986 30 H 0.082 0.918 31 H 0.168 0.832 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.182 0.818 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.666 -4.963 23.470 24.047 hybrid contribution 3.663 -0.493 -1.881 4.147 sum 1.997 -5.457 21.590 22.358 Atomic orbital electron populations 1.21538 0.96685 0.99332 0.99647 1.19011 0.93594 0.90549 0.86806 1.01752 1.21586 1.32036 1.12854 0.91874 0.92508 1.25741 0.95125 0.95695 1.02033 1.70010 1.37225 1.23895 1.24346 0.85537 0.78489 0.78852 0.78291 1.19308 1.20629 1.20039 1.60778 1.31809 1.32897 1.05369 1.21574 1.00626 0.93001 0.90388 1.27832 1.06029 1.13302 1.10467 1.68695 1.09367 0.79152 0.83354 1.92966 1.60210 1.53751 1.84840 1.27697 0.99500 1.14595 1.15308 1.21169 0.95534 0.96593 0.97635 1.21464 1.01093 0.98179 0.96391 1.21760 0.94091 0.96829 0.97974 1.21807 0.96016 0.99162 0.98646 1.21469 1.01031 0.91395 0.91923 0.94869 0.94713 0.92526 0.92696 0.85670 0.88512 0.98639 0.91761 0.83190 0.88688 0.85055 0.83027 0.81822 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.58 9.19 71.98 0.66 -4.92 16 2 C 0.21 10.95 2.60 44.17 0.11 11.06 16 3 H -0.04 -2.06 7.80 -2.39 -0.02 -2.07 16 4 C -0.55 -30.86 8.59 25.60 0.22 -30.64 16 5 H 0.06 3.15 7.62 -2.91 -0.02 3.13 16 6 C 0.01 0.77 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.50 11.32 21.45 0.24 -53.25 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.68 -29.45 6.30 -495.46 -3.12 -32.58 16 13 C 0.07 2.67 5.49 86.30 0.47 3.15 16 14 C -0.44 -11.85 6.14 71.98 0.44 -11.41 16 15 S 1.40 31.72 13.55 -56.49 -0.77 30.96 16 16 O -0.92 -34.30 16.90 -148.98 -2.52 -36.82 16 17 C -0.47 -10.08 5.61 22.27 0.12 -9.95 16 18 C -0.09 -2.32 9.44 22.27 0.21 -2.11 16 19 C -0.15 -3.06 10.05 22.27 0.22 -2.84 16 20 C -0.09 -1.28 10.05 22.27 0.22 -1.06 16 21 C -0.14 -1.65 10.05 22.27 0.22 -1.43 16 22 C -0.04 -0.53 9.75 22.27 0.22 -0.31 16 23 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.45 7.45 -2.38 -0.02 1.43 16 25 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 26 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 27 H 0.33 14.40 8.22 -89.69 -0.74 13.67 16 28 H 0.10 3.01 7.44 -2.39 -0.02 2.99 16 29 H 0.00 -0.19 8.05 -2.39 -0.02 -0.21 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 31 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.09 2.94 7.45 -2.91 -0.02 2.92 16 33 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -78.83 316.27 -0.22 -79.05 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.33 Total: 15.65 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.59 Total: -49.25 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.88 Total: -85.83 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -2.52 Total: -36.82 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 31.72 SS G_CDS: -0.77 Total: 30.96 kcal Total: -78.83 -0.22 -79.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309806008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.956 kcal (2) G-P(sol) polarization free energy of solvation -78.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds