Wall clock time and date at job start Mon Mar 30 2020 00:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 S 1.81407 * 109.47022 * 180.02562 * 14 13 12 16 16 O 1.42101 * 109.46717 * 289.05935 * 15 14 13 17 17 C 1.76196 * 102.99998 * 180.02562 * 15 14 13 18 18 C 1.38236 * 120.00243 * 269.72527 * 17 15 14 19 19 C 1.38234 * 119.99903 * 179.76650 * 18 17 15 20 20 C 1.38232 * 120.00165 * 0.51006 * 19 18 17 21 21 C 1.38240 * 120.00183 * 359.74565 * 20 19 18 22 22 C 1.38239 * 119.99616 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 28 28 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 29 29 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 30 30 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 31 31 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 32 32 H 1.07998 * 119.99508 * 0.02562 * 18 17 15 33 33 H 1.08003 * 119.99825 * 180.22818 * 19 18 17 34 34 H 1.08000 * 120.00047 * 179.72311 * 20 19 18 35 35 H 1.07997 * 120.00279 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.99679 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 16 2.6744 0.5977 -4.9909 16 8 1.3565 0.9125 -5.4190 17 6 3.2761 -0.4327 -6.2873 18 6 4.6363 -0.5439 -6.5072 19 6 5.1085 -1.3561 -7.5212 20 6 4.2201 -2.0490 -8.3221 21 6 2.8596 -1.9338 -8.1057 22 6 2.3876 -1.1260 -7.0880 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 1.4495 -1.4978 -1.4102 28 1 1.0871 0.6165 -2.5525 29 1 2.7588 1.0464 -2.1181 30 1 3.5917 -0.9260 -3.3683 31 1 1.9201 -1.3564 -3.8032 32 1 5.3302 0.0006 -5.8840 33 1 6.1714 -1.4458 -7.6905 34 1 4.5889 -2.6800 -9.1172 35 1 2.1655 -2.4747 -8.7317 36 1 1.3248 -1.0357 -6.9192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309806010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:08 Heat of formation + Delta-G solvation = -14.966599 kcal Electronic energy + Delta-G solvation = -17257.266144 eV Core-core repulsion = 14446.833240 eV Total energy + Delta-G solvation = -2810.432904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.13332 -36.26645 -35.67418 -32.98062 -31.27814 -31.13615 -30.51137 -26.92610 -25.11678 -23.17981 -22.82525 -21.85068 -20.22318 -18.23351 -17.01584 -16.29261 -15.79379 -15.36985 -15.05882 -14.84601 -14.43247 -14.36065 -13.86945 -13.65336 -13.18821 -12.92613 -12.56610 -12.11299 -11.94814 -11.65868 -11.52003 -11.33607 -11.12651 -10.91821 -10.71368 -10.47295 -10.18845 -10.13838 -9.78834 -9.40702 -9.17689 -8.99708 -8.35659 -8.31768 -7.26294 -5.97451 -4.01013 0.73403 1.15358 1.82867 2.72625 3.33366 3.39648 3.44122 3.48553 3.91812 4.45186 4.64707 4.72807 4.82240 5.16460 5.18984 5.23435 5.33204 5.34018 5.56493 5.61606 5.76602 5.93821 6.08140 6.10398 6.20243 6.21047 6.34659 6.70618 6.70921 6.86027 7.10663 7.35546 7.74672 7.88895 8.27185 8.51368 8.61103 9.06071 9.64247 11.09620 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.003458 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.813977 B = 8096.358491 C = 8472.780450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.209 3.791 3 H 0.036 0.964 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.679 5.679 13 C 0.079 3.921 14 C -0.442 4.442 15 S 1.324 4.676 16 O -0.856 6.856 17 C -0.456 4.456 18 C -0.044 4.044 19 C -0.139 4.139 20 C -0.090 4.090 21 C -0.138 4.138 22 C -0.055 4.055 23 H 0.090 0.910 24 H 0.005 0.995 25 H 0.027 0.973 26 H 0.260 0.740 27 H 0.325 0.675 28 H 0.022 0.978 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.993 -1.676 -19.523 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.101 3.899 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.309 5.309 13 C -0.053 4.053 14 C -0.580 4.580 15 S 1.522 4.478 16 O -0.851 6.851 17 C -0.552 4.552 18 C -0.063 4.063 19 C -0.158 4.158 20 C -0.108 4.108 21 C -0.157 4.157 22 C -0.074 4.074 23 H 0.109 0.891 24 H 0.024 0.976 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.040 0.960 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.331 -0.510 -19.268 21.415 hybrid contribution -2.059 -2.378 0.114 3.148 sum 7.272 -2.888 -19.154 20.691 Atomic orbital electron populations 1.22453 1.00773 0.99214 1.00595 1.19216 0.89617 0.94571 0.86470 0.94625 1.21156 1.30268 1.12444 0.89569 0.91913 1.24966 0.95358 0.95203 0.99065 1.69888 1.37313 1.23164 1.23359 0.86496 0.79221 0.79220 0.82426 1.20907 1.19839 1.21349 1.60887 1.58030 1.08880 1.03119 1.21448 0.98517 0.95763 0.89538 1.27831 1.08079 1.11571 1.10516 1.69552 1.00215 0.93978 0.84073 1.93085 1.39135 1.74833 1.78077 1.27909 1.00009 1.12845 1.14399 1.20920 0.93531 0.95730 0.96138 1.21293 0.99882 0.98060 0.96570 1.21333 0.93477 0.97701 0.98326 1.21266 0.95886 0.99872 0.98708 1.21183 0.99836 0.92858 0.93526 0.89137 0.97592 0.95411 0.93047 0.85896 0.95966 0.90556 0.85962 0.90018 0.84409 0.85456 0.85904 0.85978 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.94 37.16 0.33 -3.93 16 2 C 0.21 5.31 2.57 -68.87 -0.18 5.13 16 3 H 0.04 0.97 7.80 -51.93 -0.40 0.57 16 4 C -0.50 -13.77 8.84 -34.44 -0.30 -14.08 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.79 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.68 -14.52 6.23 -107.95 -0.67 -15.20 16 13 C 0.08 1.38 5.49 -3.82 -0.02 1.36 16 14 C -0.44 -6.05 6.14 37.15 0.23 -5.83 16 15 S 1.32 15.23 13.55 -107.50 -1.46 13.77 16 16 O -0.86 -15.06 16.90 -35.23 -0.60 -15.65 16 17 C -0.46 -5.11 5.61 -39.58 -0.22 -5.33 16 18 C -0.04 -0.38 9.75 -39.58 -0.39 -0.77 16 19 C -0.14 -1.15 10.05 -39.59 -0.40 -1.54 16 20 C -0.09 -0.79 10.05 -39.58 -0.40 -1.19 16 21 C -0.14 -1.43 10.05 -39.58 -0.40 -1.83 16 22 C -0.05 -0.69 9.44 -39.58 -0.37 -1.06 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 24 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 25 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.32 6.78 8.47 -39.29 -0.33 6.44 16 28 H 0.02 0.43 7.44 -51.93 -0.39 0.04 16 29 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 30 H 0.12 1.46 8.14 -51.92 -0.42 1.04 16 31 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.73 7.45 -52.49 -0.39 1.34 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -34.95 316.60 -9.70 -44.65 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.14 Total: 4.00 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -2.21 Total: -27.64 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.05 Total: -40.36 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.60 Total: -15.65 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 15.23 SS G_CDS: -1.46 Total: 13.77 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.95 -9.70 -44.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309806010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.686 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds