Wall clock time and date at job start Mon Mar 30 2020 00:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 S 1.81407 * 109.47022 * 180.02562 * 14 13 12 16 16 O 1.42101 * 109.46717 * 289.05935 * 15 14 13 17 17 C 1.76196 * 102.99998 * 180.02562 * 15 14 13 18 18 C 1.38236 * 120.00243 * 269.72527 * 17 15 14 19 19 C 1.38234 * 119.99903 * 179.76650 * 18 17 15 20 20 C 1.38232 * 120.00165 * 0.51006 * 19 18 17 21 21 C 1.38240 * 120.00183 * 359.74565 * 20 19 18 22 22 C 1.38239 * 119.99616 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 28 28 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 29 29 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 30 30 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 31 31 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 32 32 H 1.07998 * 119.99508 * 0.02562 * 18 17 15 33 33 H 1.08003 * 119.99825 * 180.22818 * 19 18 17 34 34 H 1.08000 * 120.00047 * 179.72311 * 20 19 18 35 35 H 1.07997 * 120.00279 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.99679 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 16 2.6744 0.5977 -4.9909 16 8 1.3565 0.9125 -5.4190 17 6 3.2761 -0.4327 -6.2873 18 6 4.6363 -0.5439 -6.5072 19 6 5.1085 -1.3561 -7.5212 20 6 4.2201 -2.0490 -8.3221 21 6 2.8596 -1.9338 -8.1057 22 6 2.3876 -1.1260 -7.0880 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 1.4495 -1.4978 -1.4102 28 1 1.0871 0.6165 -2.5525 29 1 2.7588 1.0464 -2.1181 30 1 3.5917 -0.9260 -3.3683 31 1 1.9201 -1.3564 -3.8032 32 1 5.3302 0.0006 -5.8840 33 1 6.1714 -1.4458 -7.6905 34 1 4.5889 -2.6800 -9.1172 35 1 2.1655 -2.4747 -8.7317 36 1 1.3248 -1.0357 -6.9192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309806010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:08 Heat of formation + Delta-G solvation = -39.734429 kcal Electronic energy + Delta-G solvation = -17258.340158 eV Core-core repulsion = 14446.833240 eV Total energy + Delta-G solvation = -2811.506917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85811 -38.04093 -36.91075 -34.88406 -32.30009 -31.98550 -31.86203 -28.63570 -27.24359 -24.09916 -23.55856 -23.15500 -22.17469 -19.11189 -18.33381 -17.95190 -16.86397 -16.72411 -16.30018 -16.05939 -15.87007 -15.52608 -15.04270 -14.89027 -14.39383 -14.24880 -13.77599 -13.67022 -13.44611 -13.10666 -12.93378 -12.75029 -12.59503 -12.51004 -12.21727 -12.09374 -12.02036 -11.90469 -11.23694 -10.98691 -10.48554 -10.20572 -9.91063 -9.38448 -9.03974 -8.08782 -6.20545 -0.07687 0.41945 0.89846 1.45487 1.45805 1.57420 1.78436 2.45840 2.69501 2.94040 3.19564 3.72904 3.91227 3.94185 4.08461 4.18064 4.20657 4.51535 4.54796 4.58970 4.68603 4.78754 4.85087 4.89119 5.02271 5.07260 5.13492 5.33419 5.37773 5.40219 5.50679 5.66317 5.79286 6.01745 6.24817 6.60736 6.74569 6.92872 7.49374 8.97109 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.003458 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.813977 B = 8096.358491 C = 8472.780450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.212 3.788 3 H 0.012 0.988 4 C -0.515 4.515 5 H 0.058 0.942 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.283 1.283 12 N -0.679 5.679 13 C 0.074 3.926 14 C -0.440 4.440 15 S 1.394 4.606 16 O -0.920 6.920 17 C -0.473 4.473 18 C -0.040 4.040 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.152 4.152 22 C -0.089 4.089 23 H 0.066 0.934 24 H 0.017 0.983 25 H 0.028 0.972 26 H 0.261 0.739 27 H 0.326 0.674 28 H 0.002 0.998 29 H 0.092 0.908 30 H 0.147 0.853 31 H 0.065 0.935 32 H 0.180 0.820 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 -2.594 -20.326 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.103 3.897 3 H 0.030 0.970 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.205 1.205 10 H -0.191 1.191 11 H -0.209 1.209 12 N -0.309 5.309 13 C -0.057 4.057 14 C -0.576 4.576 15 S 1.593 4.407 16 O -0.916 6.916 17 C -0.571 4.571 18 C -0.059 4.059 19 C -0.157 4.157 20 C -0.107 4.107 21 C -0.171 4.171 22 C -0.109 4.109 23 H 0.084 0.916 24 H 0.036 0.964 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.020 0.980 29 H 0.111 0.889 30 H 0.165 0.835 31 H 0.084 0.916 32 H 0.197 0.803 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.149 -1.426 -20.067 23.502 hybrid contribution -2.864 -2.126 0.218 3.574 sum 9.285 -3.551 -19.850 22.200 Atomic orbital electron populations 1.22301 1.00769 0.99006 0.99900 1.19015 0.89549 0.93398 0.87762 0.96972 1.21445 1.30546 1.12555 0.90862 0.92391 1.25766 0.95435 0.95862 1.02033 1.70015 1.38052 1.24303 1.24067 0.85465 0.78849 0.78092 0.78636 1.20490 1.19080 1.20886 1.60802 1.57425 1.09282 1.03342 1.21561 0.98176 0.96134 0.89801 1.27825 1.08734 1.11214 1.09860 1.68774 0.97182 0.92144 0.82606 1.92961 1.42415 1.76727 1.79505 1.27704 1.01348 1.13738 1.14298 1.21461 0.92659 0.95314 0.96477 1.21800 1.01655 0.96731 0.95496 1.21759 0.92629 0.97477 0.98813 1.21469 0.97394 0.99787 0.98446 1.21171 0.98864 0.95140 0.95681 0.91554 0.96446 0.95261 0.92957 0.85722 0.97977 0.88944 0.83474 0.91569 0.80315 0.81910 0.83042 0.84992 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.15 8.94 71.98 0.64 -7.50 16 2 C 0.21 10.91 2.57 44.17 0.11 11.02 16 3 H 0.01 0.69 7.80 -2.39 -0.02 0.67 16 4 C -0.52 -28.77 8.84 25.60 0.23 -28.55 16 5 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 6 C 0.01 0.39 5.30 84.66 0.45 0.84 16 7 N -0.92 -53.65 11.32 21.45 0.24 -53.40 16 8 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.68 -29.09 6.23 -495.46 -3.09 -32.17 16 13 C 0.07 2.60 5.49 86.30 0.47 3.08 16 14 C -0.44 -11.74 6.14 71.98 0.44 -11.29 16 15 S 1.39 31.41 13.55 -56.49 -0.77 30.64 16 16 O -0.92 -33.57 16.90 -148.98 -2.52 -36.09 16 17 C -0.47 -10.04 5.61 22.27 0.12 -9.91 16 18 C -0.04 -0.55 9.75 22.27 0.22 -0.33 16 19 C -0.14 -1.68 10.05 22.27 0.22 -1.46 16 20 C -0.09 -1.28 10.05 22.27 0.22 -1.06 16 21 C -0.15 -3.02 10.05 22.27 0.22 -2.79 16 22 C -0.09 -2.27 9.44 22.27 0.21 -2.06 16 23 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 24 H 0.02 0.79 7.45 -2.38 -0.02 0.78 16 25 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.33 13.69 8.47 -89.69 -0.76 12.93 16 28 H 0.00 0.08 7.44 -2.39 -0.02 0.06 16 29 H 0.09 2.92 8.05 -2.39 -0.02 2.90 16 30 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 33 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.10 2.92 7.45 -2.91 -0.02 2.90 16 Total: -1.00 -77.24 316.60 -0.22 -77.46 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.31 Total: 17.73 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 3.57 Total: -50.03 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.85 Total: -85.58 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -2.52 Total: -36.09 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 31.41 SS G_CDS: -0.77 Total: 30.64 kcal Total: -77.24 -0.22 -77.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309806010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.729 kcal (2) G-P(sol) polarization free energy of solvation -77.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds