Wall clock time and date at job start Mon Mar 30 2020 00:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 117.00357 * 2 1 4 4 C 1.38493 * 120.08057 * 0.02562 * 3 2 1 5 5 C 1.38303 * 120.02193 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.90214 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.99927 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46907 * 60.00117 * 13 11 9 15 15 H 1.48504 * 109.47065 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47302 * 300.00070 * 13 11 9 17 17 C 1.38270 * 120.19074 * 0.27260 * 5 4 3 18 18 C 1.38196 * 120.16324 * 359.44988 * 17 5 4 19 19 C 1.38790 * 119.97977 * 0.55218 * 18 17 5 20 20 S 1.76197 * 120.10060 * 179.70397 * 19 18 17 21 21 C 1.81402 * 102.99753 * 0.02562 * 20 19 18 22 22 H 1.08993 * 109.47579 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46612 * 299.99999 * 1 2 3 24 24 H 1.09004 * 109.46919 * 59.99619 * 1 2 3 25 25 H 1.07999 * 119.98737 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.47558 * 330.00090 * 6 5 4 27 27 H 1.08998 * 109.47216 * 209.99752 * 6 5 4 28 28 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 31 31 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 32 32 H 1.07996 * 119.91510 * 179.70829 * 17 5 4 33 33 H 1.08005 * 120.01062 * 180.24934 * 18 17 5 34 34 H 1.09003 * 109.47149 * 300.00184 * 21 20 19 35 35 H 1.09000 * 109.46923 * 60.00094 * 21 20 19 36 36 H 1.08999 * 109.46935 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2940 2.3744 0.0005 5 6 1.9232 3.6060 0.0011 6 6 1.1016 4.8693 0.0011 7 7 0.8342 5.2795 1.3861 8 6 0.0331 6.5102 1.4253 9 6 -0.2200 6.8994 2.8590 10 1 0.1744 6.2929 3.6608 11 6 -0.9560 8.0292 3.1470 12 7 -1.4367 8.7674 2.1705 13 14 -1.2703 8.5112 4.9241 14 1 0.0259 8.7427 5.6109 15 1 -2.0800 9.7554 4.9638 16 1 -2.0060 7.4191 5.6105 17 6 3.3038 3.6815 -0.0046 18 6 4.0624 2.5263 0.0006 19 6 3.4382 1.2867 0.0000 20 16 4.4023 -0.1881 -0.0012 21 6 6.1050 0.4375 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2154 2.3192 0.0005 26 1 0.1576 4.6889 -0.5131 27 1 1.6499 5.6592 -0.5123 28 1 1.6937 5.3905 1.9027 29 1 0.5736 7.3117 0.9216 30 1 -0.9183 6.3407 0.9211 31 1 -1.9541 9.5625 2.3732 32 1 3.7905 4.6455 -0.0089 33 1 5.1407 2.5882 0.0002 34 1 6.2689 1.0460 -0.8900 35 1 6.2688 1.0444 0.8900 36 1 6.8005 -0.4018 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309924990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:25 Heat of formation + Delta-G solvation = -15.764043 kcal Electronic energy + Delta-G solvation = -17381.560166 eV Core-core repulsion = 14571.092683 eV Total energy + Delta-G solvation = -2810.467483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07691 -37.67802 -35.25219 -32.75746 -31.20675 -30.24860 -29.00413 -27.65869 -26.74437 -24.45166 -22.15897 -21.65370 -21.08390 -18.16565 -17.00443 -16.52780 -16.06757 -15.75243 -15.19677 -14.70189 -14.46426 -14.32554 -13.91796 -13.88036 -13.61135 -13.27763 -12.78164 -12.56847 -12.35165 -11.97561 -11.82892 -11.39304 -11.24706 -11.09596 -10.91045 -10.70840 -10.65355 -10.21705 -9.98711 -9.50764 -9.22121 -8.50747 -8.43808 -7.39897 -7.19088 -6.06086 -4.08322 1.23529 1.47077 1.49429 2.40864 3.25401 3.32272 3.35981 3.39358 3.71418 4.41467 4.79186 4.86287 4.88802 4.90433 5.13345 5.18538 5.22390 5.27086 5.29824 5.44034 5.49550 5.52046 5.61714 5.75234 5.92771 6.14830 6.19027 6.32321 6.72250 6.79454 7.18192 7.33537 7.36390 7.74095 8.07900 8.32807 8.54735 9.00503 9.56687 11.04941 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.027152 B = 0.003649 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.971780 B = 7671.858522 C = 8034.412335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.144 3.856 4 C -0.170 4.170 5 C -0.028 4.028 6 C 0.092 3.908 7 N -0.683 5.683 8 C 0.194 3.806 9 C -0.516 4.516 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.900 3.100 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.128 4.128 20 S -0.104 6.104 21 C -0.151 4.151 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.135 0.865 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.331 0.669 29 H -0.012 1.012 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -16.211 -6.900 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.093 3.907 4 C -0.190 4.190 5 C -0.031 4.031 6 C -0.037 4.037 7 N -0.314 5.314 8 C 0.067 3.933 9 C -0.554 4.554 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.728 3.272 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.155 4.155 18 C -0.120 4.120 19 C -0.241 4.241 20 S 0.136 5.864 21 C -0.319 4.319 22 H 0.117 0.883 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.147 0.853 29 H 0.005 0.995 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.960 -17.848 -6.872 21.563 hybrid contribution 0.536 2.593 0.672 2.732 sum 10.497 -15.255 -6.200 19.528 Atomic orbital electron populations 1.23089 0.78137 1.03801 1.01877 1.86093 1.21454 1.26314 1.88577 1.18332 0.90069 0.84770 0.97481 1.21072 1.00235 0.91026 1.06707 1.19890 0.93445 0.94906 0.94823 1.20915 0.97749 0.91796 0.93247 1.60742 1.23006 1.38644 1.08974 1.19588 0.92475 0.83787 0.97424 1.21139 1.33468 1.08732 0.92091 0.91971 1.24989 0.95705 0.96245 0.97590 1.69955 1.36101 1.16202 1.31498 0.86526 0.78289 0.77735 0.84659 1.20230 1.21307 1.20118 1.20894 0.93358 0.97957 1.03278 1.20888 0.99390 0.90695 1.01011 1.20815 0.93395 0.97073 1.12795 1.85527 0.99118 1.08407 1.93305 1.23685 0.96895 1.05877 1.05477 0.88318 0.92118 0.92568 0.84693 0.90783 0.95020 0.85271 0.99459 0.95316 0.92813 0.85687 0.85543 0.89996 0.89888 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.31 9.87 -19.75 -0.19 -4.51 16 3 C 0.14 2.13 6.69 -39.07 -0.26 1.87 16 4 C -0.17 -2.56 8.69 -39.46 -0.34 -2.90 16 5 C -0.03 -0.44 5.39 -104.59 -0.56 -1.00 16 6 C 0.09 1.63 5.81 -4.97 -0.03 1.60 16 7 N -0.68 -14.64 6.48 -116.34 -0.75 -15.39 16 8 C 0.19 5.04 5.44 -4.98 -0.03 5.02 16 9 C -0.52 -14.61 9.32 -34.44 -0.32 -14.93 16 10 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 13 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.13 -1.88 9.69 -39.58 -0.38 -2.27 16 18 C -0.10 -1.24 9.36 -39.39 -0.37 -1.61 16 19 C -0.13 -1.80 6.12 -38.96 -0.24 -2.04 16 20 S -0.10 -1.26 22.05 -107.50 -2.37 -3.63 16 21 C -0.15 -1.22 9.15 101.05 0.92 -0.29 16 22 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 24 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 25 H 0.14 1.91 6.30 -52.49 -0.33 1.57 16 26 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 27 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.33 6.87 8.72 -39.29 -0.34 6.53 16 29 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.13 1.30 5.88 -52.48 -0.31 0.99 16 34 H 0.08 0.60 7.75 -51.92 -0.40 0.19 16 35 H 0.08 0.63 7.75 -51.92 -0.40 0.23 16 36 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -31.39 318.09 -8.61 -40.00 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.08 Total: 1.88 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.72 Total: -13.79 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.02 Total: -41.39 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.19 Total: -4.51 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.37 Total: -3.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.39 -8.61 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309924990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.236 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds