Wall clock time and date at job start Mon Mar 30 2020 00:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 117.00357 * 2 1 4 4 C 1.38493 * 120.08057 * 0.02562 * 3 2 1 5 5 C 1.38303 * 120.02193 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.90214 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.99927 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46907 * 60.00117 * 13 11 9 15 15 H 1.48504 * 109.47065 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47302 * 300.00070 * 13 11 9 17 17 C 1.38270 * 120.19074 * 0.27260 * 5 4 3 18 18 C 1.38196 * 120.16324 * 359.44988 * 17 5 4 19 19 C 1.38790 * 119.97977 * 0.55218 * 18 17 5 20 20 S 1.76197 * 120.10060 * 179.70397 * 19 18 17 21 21 C 1.81402 * 102.99753 * 0.02562 * 20 19 18 22 22 H 1.08993 * 109.47579 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46612 * 299.99999 * 1 2 3 24 24 H 1.09004 * 109.46919 * 59.99619 * 1 2 3 25 25 H 1.07999 * 119.98737 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.47558 * 330.00090 * 6 5 4 27 27 H 1.08998 * 109.47216 * 209.99752 * 6 5 4 28 28 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 31 31 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 32 32 H 1.07996 * 119.91510 * 179.70829 * 17 5 4 33 33 H 1.08005 * 120.01062 * 180.24934 * 18 17 5 34 34 H 1.09003 * 109.47149 * 300.00184 * 21 20 19 35 35 H 1.09000 * 109.46923 * 60.00094 * 21 20 19 36 36 H 1.08999 * 109.46935 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2940 2.3744 0.0005 5 6 1.9232 3.6060 0.0011 6 6 1.1016 4.8693 0.0011 7 7 0.8342 5.2795 1.3861 8 6 0.0331 6.5102 1.4253 9 6 -0.2200 6.8994 2.8590 10 1 0.1744 6.2929 3.6608 11 6 -0.9560 8.0292 3.1470 12 7 -1.4367 8.7674 2.1705 13 14 -1.2703 8.5112 4.9241 14 1 0.0259 8.7427 5.6109 15 1 -2.0800 9.7554 4.9638 16 1 -2.0060 7.4191 5.6105 17 6 3.3038 3.6815 -0.0046 18 6 4.0624 2.5263 0.0006 19 6 3.4382 1.2867 0.0000 20 16 4.4023 -0.1881 -0.0012 21 6 6.1050 0.4375 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2154 2.3192 0.0005 26 1 0.1576 4.6889 -0.5131 27 1 1.6499 5.6592 -0.5123 28 1 1.6937 5.3905 1.9027 29 1 0.5736 7.3117 0.9216 30 1 -0.9183 6.3407 0.9211 31 1 -1.9541 9.5625 2.3732 32 1 3.7905 4.6455 -0.0089 33 1 5.1407 2.5882 0.0002 34 1 6.2689 1.0460 -0.8900 35 1 6.2688 1.0444 0.8900 36 1 6.8005 -0.4018 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309924990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:25 Heat of formation + Delta-G solvation = -35.884961 kcal Electronic energy + Delta-G solvation = -17382.432675 eV Core-core repulsion = 14571.092683 eV Total energy + Delta-G solvation = -2811.339992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13689 -38.79758 -36.90806 -34.70481 -32.62279 -31.29421 -29.73152 -29.15208 -28.00095 -26.05945 -23.55799 -23.19601 -22.40153 -19.26213 -18.55373 -17.95863 -17.32981 -16.75302 -16.69957 -16.29670 -15.74710 -15.38982 -15.22634 -15.10627 -14.57124 -14.56202 -14.19551 -13.63328 -13.50005 -13.34448 -13.12716 -12.97908 -12.69626 -12.63206 -12.47348 -12.16812 -11.98621 -11.82754 -11.35517 -11.08661 -10.67599 -10.59499 -9.49992 -9.16960 -8.25380 -8.18309 -6.34839 0.11513 0.38463 0.61432 1.41314 1.44589 1.52742 1.57228 2.31480 2.39236 2.59293 3.09860 3.62201 3.74178 3.87889 4.13068 4.23500 4.31200 4.31636 4.35629 4.37087 4.48889 4.52405 4.65232 4.72015 4.81289 4.90236 5.05288 5.10807 5.17894 5.26284 5.58175 5.60735 5.69970 5.99566 6.30889 6.40203 6.66673 6.85803 7.36020 8.87731 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.027152 B = 0.003649 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.971780 B = 7671.858522 C = 8034.412335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.323 6.323 3 C 0.130 3.870 4 C -0.178 4.178 5 C -0.045 4.045 6 C 0.098 3.902 7 N -0.682 5.682 8 C 0.208 3.792 9 C -0.538 4.538 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.269 1.269 17 C -0.136 4.136 18 C -0.092 4.092 19 C -0.135 4.135 20 S -0.134 6.134 21 C -0.141 4.141 22 H 0.124 0.876 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.136 0.864 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.336 0.664 29 H -0.035 1.035 30 H 0.003 0.997 31 H 0.266 0.734 32 H 0.139 0.861 33 H 0.157 0.843 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.334 -17.015 -6.130 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.236 6.236 3 C 0.080 3.920 4 C -0.198 4.198 5 C -0.048 4.048 6 C -0.031 4.031 7 N -0.313 5.313 8 C 0.081 3.919 9 C -0.576 4.576 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.156 4.156 18 C -0.115 4.115 19 C -0.248 4.248 20 S 0.107 5.893 21 C -0.309 4.309 22 H 0.143 0.857 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.154 0.846 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.153 0.847 29 H -0.017 1.017 30 H 0.021 0.979 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.174 0.826 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.508 -18.681 -6.111 22.776 hybrid contribution 0.127 2.734 0.363 2.761 sum 11.635 -15.947 -5.748 20.560 Atomic orbital electron populations 1.23321 0.76604 1.05575 1.01966 1.86084 1.23097 1.25959 1.88494 1.18512 0.90761 0.84911 0.97843 1.21113 1.00484 0.91201 1.07045 1.19697 0.94069 0.93829 0.97199 1.20858 0.98175 0.93090 0.90978 1.60593 1.23128 1.35951 1.11625 1.19235 0.91717 0.84903 0.96087 1.21501 1.33871 1.09214 0.93032 0.91875 1.25935 0.95180 0.96070 1.02360 1.70079 1.36640 1.16675 1.33915 0.85390 0.78565 0.77513 0.78864 1.19073 1.20691 1.19413 1.21076 0.92721 0.99148 1.02689 1.21200 1.00805 0.89755 0.99762 1.21147 0.93586 0.98275 1.11766 1.85620 1.02232 1.08449 1.93023 1.23811 0.93682 1.06968 1.06476 0.85739 0.92590 0.91912 0.84649 0.91273 0.94545 0.84727 1.01688 0.97932 0.92541 0.84355 0.82566 0.88763 0.89030 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.32 -8.81 9.87 -93.60 -0.92 -9.73 16 3 C 0.13 3.81 6.69 22.60 0.15 3.96 16 4 C -0.18 -5.37 8.69 22.35 0.19 -5.17 16 5 C -0.05 -1.40 5.39 -19.84 -0.11 -1.51 16 6 C 0.10 3.51 5.81 85.55 0.50 4.01 16 7 N -0.68 -29.71 6.48 -521.98 -3.38 -33.09 16 8 C 0.21 11.17 5.44 85.56 0.47 11.63 16 9 C -0.54 -30.82 9.32 25.60 0.24 -30.58 16 10 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 11 C 0.00 0.17 5.46 84.66 0.46 0.63 16 12 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 13 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 C -0.14 -3.63 9.69 22.27 0.22 -3.42 16 18 C -0.09 -2.18 9.36 22.39 0.21 -1.97 16 19 C -0.13 -3.61 6.12 22.67 0.14 -3.47 16 20 S -0.13 -3.02 22.05 -56.49 -1.25 -4.26 16 21 C -0.14 -1.81 9.15 113.37 1.04 -0.78 16 22 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 24 H 0.06 1.15 7.66 -2.39 -0.02 1.14 16 25 H 0.14 3.92 6.30 -2.91 -0.02 3.90 16 26 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 27 H 0.04 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.34 14.00 8.72 -89.69 -0.78 13.21 16 29 H -0.03 -1.97 8.14 -2.39 -0.02 -1.99 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.16 2.67 5.88 -2.91 -0.02 2.65 16 34 H 0.09 1.02 7.75 -2.39 -0.02 1.01 16 35 H 0.09 1.07 7.75 -2.39 -0.02 1.05 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -67.57 318.09 1.67 -65.90 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.30 Total: 16.05 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.62 Total: -25.15 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -3.10 Total: -89.04 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.92 Total: -9.73 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -1.25 Total: -4.26 kcal Total: -67.57 1.67 -65.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309924990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.011 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds