Wall clock time and date at job start Mon Mar 30 2020 01:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99819 * 2 1 4 4 C 1.52994 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47050 * 65.00005 * 4 3 2 6 6 C 1.36886 * 119.99846 * 286.66816 * 5 4 3 7 7 H 1.08007 * 120.00023 * 41.22571 * 6 5 4 8 8 C 1.39026 * 120.00374 * 221.21391 * 6 5 4 9 9 N 1.31378 * 119.99827 * 21.94568 * 8 6 5 10 10 Si 1.86800 * 120.00457 * 201.94333 * 8 6 5 11 11 H 1.48499 * 109.47204 * 64.99850 * 10 8 6 12 12 H 1.48500 * 109.47196 * 185.00103 * 10 8 6 13 13 H 1.48498 * 109.47034 * 304.99762 * 10 8 6 14 14 C 1.34777 * 119.99773 * 106.67309 * 5 4 3 15 15 O 1.21608 * 119.99650 * 186.94066 * 14 5 4 16 16 C 1.47581 * 119.99976 * 6.93867 * 14 5 4 17 17 C 1.39724 * 120.17357 * 326.16505 * 16 14 5 18 18 C 1.37835 * 119.86800 * 179.97438 * 17 16 14 19 19 C 1.38472 * 120.22779 * 0.02562 * 18 17 16 20 20 C 1.38224 * 120.34889 * 0.02562 * 19 18 17 21 21 C 1.38286 * 120.12493 * 359.97419 * 20 19 18 22 22 F 1.35101 * 120.11684 * 180.02562 * 21 20 19 23 23 H 1.09006 * 109.47008 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47589 * 299.99928 * 1 2 3 25 25 H 1.09000 * 109.47154 * 60.00318 * 1 2 3 26 26 H 1.09000 * 109.47100 * 59.99668 * 3 2 1 27 27 H 1.09000 * 109.47253 * 300.00036 * 3 2 1 28 28 H 1.09001 * 109.47335 * 304.99910 * 4 3 2 29 29 H 1.09002 * 109.47241 * 185.00048 * 4 3 2 30 30 H 0.96999 * 120.00378 * 184.94929 * 9 8 6 31 31 H 1.07994 * 120.06162 * 0.25537 * 17 16 14 32 32 H 1.08001 * 119.88367 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.82579 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.93373 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.7780 -0.7744 -1.4583 7 1 2.8472 -1.2347 -1.1611 8 6 4.7742 -1.5413 -2.0518 9 7 6.0223 -1.1320 -2.0243 10 14 4.3383 -3.1537 -2.8882 11 1 3.4755 -2.8830 -4.0660 12 1 5.5820 -3.8335 -3.3314 13 1 3.6110 -4.0266 -1.9319 14 6 4.5782 1.3108 -2.1980 15 8 4.8305 0.8267 -3.2847 16 6 4.9307 2.7159 -1.9162 17 6 4.1180 3.4906 -1.0847 18 6 4.4535 4.8021 -0.8253 19 6 5.5927 5.3544 -1.3864 20 6 6.4027 4.5966 -2.2112 21 6 6.0798 3.2793 -2.4812 22 9 6.8719 2.5387 -3.2869 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5686 0.8427 29 1 3.9784 2.1766 0.0902 30 1 6.7064 -1.6293 -2.4993 31 1 3.2312 3.0614 -0.6424 32 1 3.8257 5.4011 -0.1823 33 1 5.8492 6.3828 -1.1791 34 1 7.2894 5.0342 -2.6456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316982309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:14 Heat of formation + Delta-G solvation = -54.757665 kcal Electronic energy + Delta-G solvation = -20975.429316 eV Core-core repulsion = 17597.057766 eV Total energy + Delta-G solvation = -3378.371550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.13835 -39.47273 -37.63981 -36.95295 -34.24097 -32.35982 -30.54992 -30.06894 -28.89393 -26.00708 -24.95486 -23.11635 -22.25294 -21.87964 -19.65158 -17.23344 -16.93275 -16.34009 -15.87867 -15.71811 -15.30135 -14.96736 -14.65667 -14.54040 -14.22167 -13.82608 -13.71422 -13.09192 -12.78355 -12.45290 -12.10221 -11.83725 -11.59728 -11.33462 -11.22540 -11.21129 -10.88214 -10.68782 -10.43907 -10.32698 -10.09402 -9.20586 -8.66442 -8.59686 -8.29995 -8.07203 -7.11923 -6.06250 -3.72716 1.32824 1.50053 3.39936 3.46948 3.50990 3.70123 4.22923 4.30974 4.59934 4.70712 4.91913 5.02836 5.12423 5.29589 5.40810 5.49311 5.53400 5.59709 5.63759 5.72793 5.83760 5.91734 5.96489 6.02939 6.15143 6.36342 6.47836 6.55753 6.59752 6.63950 7.21213 7.64817 7.83521 8.36266 9.07888 9.24894 9.68871 10.28295 11.01918 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.009245 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.732207 B = 3027.885966 C = 4530.253123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.049 3.951 4 C 0.065 3.935 5 N -0.429 5.429 6 C -0.329 4.329 7 H 0.100 0.900 8 C 0.067 3.933 9 N -0.832 5.832 10 Si 0.910 3.090 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.503 3.497 15 O -0.531 6.531 16 C -0.130 4.130 17 C -0.102 4.102 18 C -0.144 4.144 19 C -0.095 4.095 20 C -0.167 4.167 21 C 0.143 3.857 22 F -0.119 7.119 23 H 0.080 0.920 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.266 0.734 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 11.379 5.780 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C -0.029 4.029 4 C -0.059 4.059 5 N -0.150 5.150 6 C -0.455 4.455 7 H 0.117 0.883 8 C -0.143 4.143 9 N -0.466 5.466 10 Si 0.737 3.263 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.291 3.709 15 O -0.410 6.410 16 C -0.135 4.135 17 C -0.120 4.120 18 C -0.162 4.162 19 C -0.113 4.113 20 C -0.186 4.186 21 C 0.122 3.878 22 F -0.097 7.097 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.960 10.799 5.194 12.969 hybrid contribution -0.106 -0.578 -0.470 0.752 sum -5.066 10.221 4.725 12.347 Atomic orbital electron populations 1.22692 0.82916 1.02211 0.98978 1.88168 1.17893 1.26868 1.94997 1.23034 0.95610 0.85414 0.98838 1.22540 0.91657 1.00406 0.91287 1.43103 1.53081 1.07808 1.10961 1.19329 1.00624 0.81902 1.43694 0.88300 1.25259 0.93869 0.98284 0.96910 1.69877 1.00107 1.40517 1.36070 0.86309 0.77699 0.82099 0.80223 1.20111 1.21427 1.20189 1.17563 0.84648 0.83257 0.85417 1.90633 1.55139 1.71958 1.23261 1.20784 0.95483 0.97968 0.99235 1.21867 1.00397 0.93536 0.96195 1.21068 0.98076 0.95150 1.01911 1.20952 0.94475 0.99446 0.96451 1.21055 1.02264 0.92755 1.02566 1.17775 0.89366 0.89140 0.91499 1.91573 1.71754 1.76577 1.69777 0.90118 0.95005 0.94632 0.93723 0.93646 0.91044 0.87818 0.92423 0.83237 0.85575 0.85525 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.81 8.47 -35.23 -0.30 -7.11 16 3 C 0.05 0.82 5.30 37.15 0.20 1.01 16 4 C 0.06 1.28 5.39 -4.04 -0.02 1.26 16 5 N -0.43 -11.06 2.59 -115.97 -0.30 -11.36 16 6 C -0.33 -9.33 8.74 -15.00 -0.13 -9.47 16 7 H 0.10 2.75 6.17 -52.48 -0.32 2.43 16 8 C 0.07 1.96 4.27 -17.45 -0.07 1.88 16 9 N -0.83 -25.64 11.97 55.50 0.66 -24.98 16 10 Si 0.91 22.95 29.61 -169.99 -5.03 17.92 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.50 13.52 6.47 -12.45 -0.08 13.44 16 15 O -0.53 -16.62 14.06 5.27 0.07 -16.55 16 16 C -0.13 -2.81 5.54 -104.91 -0.58 -3.39 16 17 C -0.10 -1.67 7.46 -39.17 -0.29 -1.96 16 18 C -0.14 -1.87 10.03 -39.64 -0.40 -2.26 16 19 C -0.09 -1.21 10.04 -39.50 -0.40 -1.60 16 20 C -0.17 -2.60 10.01 -39.57 -0.40 -3.00 16 21 C 0.14 2.97 7.24 -38.94 -0.28 2.68 16 22 F -0.12 -2.85 16.08 2.25 0.04 -2.81 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.75 7.57 -51.93 -0.39 0.36 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.10 1.79 3.54 -56.04 -0.20 1.59 16 30 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 31 H 0.15 2.24 3.68 -52.49 -0.19 2.04 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -36.07 289.74 -5.46 -41.53 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.63 Total: -1.13 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.34 Total: 0.12 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.36 Total: -36.34 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.22 Total: -23.66 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.07 -5.46 -41.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316982309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.223 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds