Wall clock time and date at job start Mon Mar 30 2020 01:03:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42899 * 113.99819 * 2 1
4 4 C 1.52994 * 109.47091 * 179.97438 * 3 2 1
5 5 N 1.46508 * 109.47050 * 65.00005 * 4 3 2
6 6 C 1.36886 * 119.99846 * 286.66816 * 5 4 3
7 7 H 1.08007 * 120.00023 * 41.22571 * 6 5 4
8 8 C 1.39026 * 120.00374 * 221.21391 * 6 5 4
9 9 N 1.31378 * 119.99827 * 21.94568 * 8 6 5
10 10 Si 1.86800 * 120.00457 * 201.94333 * 8 6 5
11 11 H 1.48499 * 109.47204 * 64.99850 * 10 8 6
12 12 H 1.48500 * 109.47196 * 185.00103 * 10 8 6
13 13 H 1.48498 * 109.47034 * 304.99762 * 10 8 6
14 14 C 1.34777 * 119.99773 * 106.67309 * 5 4 3
15 15 O 1.21608 * 119.99650 * 186.94066 * 14 5 4
16 16 C 1.47581 * 119.99976 * 6.93867 * 14 5 4
17 17 C 1.39724 * 120.17357 * 326.16505 * 16 14 5
18 18 C 1.37835 * 119.86800 * 179.97438 * 17 16 14
19 19 C 1.38472 * 120.22779 * 0.02562 * 18 17 16
20 20 C 1.38224 * 120.34889 * 0.02562 * 19 18 17
21 21 C 1.38286 * 120.12493 * 359.97419 * 20 19 18
22 22 F 1.35101 * 120.11684 * 180.02562 * 21 20 19
23 23 H 1.09006 * 109.47008 * 179.97438 * 1 2 3
24 24 H 1.08994 * 109.47589 * 299.99928 * 1 2 3
25 25 H 1.09000 * 109.47154 * 60.00318 * 1 2 3
26 26 H 1.09000 * 109.47100 * 59.99668 * 3 2 1
27 27 H 1.09000 * 109.47253 * 300.00036 * 3 2 1
28 28 H 1.09001 * 109.47335 * 304.99910 * 4 3 2
29 29 H 1.09002 * 109.47241 * 185.00048 * 4 3 2
30 30 H 0.96999 * 120.00378 * 184.94929 * 9 8 6
31 31 H 1.07994 * 120.06162 * 0.25537 * 17 16 14
32 32 H 1.08001 * 119.88367 * 180.02562 * 18 17 16
33 33 H 1.08002 * 119.82579 * 179.97438 * 19 18 17
34 34 H 1.08003 * 119.93373 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 7 3.9767 0.5640 -1.2509
6 6 3.7780 -0.7744 -1.4583
7 1 2.8472 -1.2347 -1.1611
8 6 4.7742 -1.5413 -2.0518
9 7 6.0223 -1.1320 -2.0243
10 14 4.3383 -3.1537 -2.8882
11 1 3.4755 -2.8830 -4.0660
12 1 5.5820 -3.8335 -3.3314
13 1 3.6110 -4.0266 -1.9319
14 6 4.5782 1.3108 -2.1980
15 8 4.8305 0.8267 -3.2847
16 6 4.9307 2.7159 -1.9162
17 6 4.1180 3.4906 -1.0847
18 6 4.4535 4.8021 -0.8253
19 6 5.5927 5.3544 -1.3864
20 6 6.4027 4.5966 -2.2112
21 6 6.0798 3.2793 -2.4812
22 9 6.8719 2.5387 -3.2869
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3634 0.5138 0.8899
25 1 -0.3633 0.5138 -0.8900
26 1 1.6885 1.8464 0.8900
27 1 1.6886 1.8464 -0.8900
28 1 3.8508 0.5686 0.8427
29 1 3.9784 2.1766 0.0902
30 1 6.7064 -1.6293 -2.4993
31 1 3.2312 3.0614 -0.6424
32 1 3.8257 5.4011 -0.1823
33 1 5.8492 6.3828 -1.1791
34 1 7.2894 5.0342 -2.6456
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000316982309.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:03:14
Heat of formation + Delta-G solvation = -80.848880 kcal
Electronic energy + Delta-G solvation = -20976.560716 eV
Core-core repulsion = 17597.057766 eV
Total energy + Delta-G solvation = -3379.502950 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-49.77422 -41.07671 -39.03058 -38.51701 -36.14147 -34.29856 -32.06489 -31.41688
-30.43963 -27.36347 -26.75529 -24.59391 -23.64104 -23.37418 -21.39304 -18.97897
-18.40690 -18.02610 -17.37179 -17.14560 -16.77421 -16.59111 -16.39634 -15.88780
-15.83130 -15.57879 -15.16710 -14.83248 -14.29051 -13.97718 -13.53520 -13.39623
-13.15889 -12.86230 -12.76468 -12.67896 -12.61882 -12.51591 -12.17777 -12.02743
-11.65595 -10.78828 -10.44111 -10.24581 -9.82865 -9.62645 -9.17873 -8.23588
-5.93697 -0.00088 0.24333 1.33455 1.43178 1.46724 2.19951 2.38650
2.78199 3.02246 3.12912 3.30227 3.40657 3.78888 3.95316 4.11460
4.27554 4.35486 4.36176 4.41735 4.52723 4.55691 4.63361 4.66685
4.90285 4.91013 5.08681 5.14643 5.20723 5.34505 5.41732 5.61097
5.96917 6.26514 6.45187 6.99396 7.19931 7.63898 8.27169 8.83894
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.016118 B = 0.009245 C = 0.006179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.732207 B = 3027.885966 C = 4530.253123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.405 6.405
3 C 0.054 3.946
4 C 0.061 3.939
5 N -0.446 5.446
6 C -0.340 4.340
7 H 0.099 0.901
8 C 0.012 3.988
9 N -0.875 5.875
10 Si 0.966 3.034
11 H -0.286 1.286
12 H -0.289 1.289
13 H -0.252 1.252
14 C 0.492 3.508
15 O -0.596 6.596
16 C -0.172 4.172
17 C -0.100 4.100
18 C -0.119 4.119
19 C -0.069 4.069
20 C -0.159 4.159
21 C 0.094 3.906
22 F -0.155 7.155
23 H 0.084 0.916
24 H 0.063 0.937
25 H 0.038 0.962
26 H 0.096 0.904
27 H 0.045 0.955
28 H 0.058 0.942
29 H 0.132 0.868
30 H 0.257 0.743
31 H 0.164 0.836
32 H 0.183 0.817
33 H 0.183 0.817
34 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.212 15.026 8.127 18.543
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.324 6.324
3 C -0.023 4.023
4 C -0.062 4.062
5 N -0.166 5.166
6 C -0.467 4.467
7 H 0.117 0.883
8 C -0.193 4.193
9 N -0.511 5.511
10 Si 0.791 3.209
11 H -0.212 1.212
12 H -0.214 1.214
13 H -0.176 1.176
14 C 0.283 3.717
15 O -0.480 6.480
16 C -0.176 4.176
17 C -0.118 4.118
18 C -0.137 4.137
19 C -0.086 4.086
20 C -0.178 4.178
21 C 0.074 3.926
22 F -0.134 7.134
23 H 0.103 0.897
24 H 0.081 0.919
25 H 0.057 0.943
26 H 0.114 0.886
27 H 0.063 0.937
28 H 0.077 0.923
29 H 0.149 0.851
30 H 0.066 0.934
31 H 0.181 0.819
32 H 0.200 0.800
33 H 0.201 0.799
34 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -6.773 14.457 7.600 17.682
hybrid contribution 0.353 -1.446 -1.113 1.858
sum -6.420 13.011 6.488 15.893
Atomic orbital electron populations
1.22878 0.80493 1.03168 1.00590 1.88089 1.20656 1.28281 1.95374
1.23010 0.92944 0.85249 1.01146 1.22835 0.94299 1.01080 0.87942
1.43326 1.53153 1.07222 1.12883 1.19551 1.00300 0.83402 1.43451
0.88310 1.26128 0.93857 1.01569 0.97757 1.69998 1.00931 1.42285
1.37924 0.85437 0.77294 0.79033 0.79176 1.21219 1.21438 1.17555
1.18479 0.83076 0.85487 0.84695 1.90557 1.57316 1.74167 1.25913
1.20543 0.98085 0.95728 1.03292 1.22041 0.99882 0.94921 0.94992
1.21702 0.98028 0.93427 1.00505 1.21669 0.92661 1.01255 0.93063
1.21441 1.03506 0.90402 1.02452 1.18448 0.89987 0.91232 0.92941
1.91471 1.72797 1.77924 1.71220 0.89702 0.91901 0.94324 0.88624
0.93683 0.92339 0.85068 0.93433 0.81887 0.79961 0.79945 0.82594
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.64 11.01 113.37 1.25 1.89 16
2 O -0.40 -14.82 8.47 -148.98 -1.26 -16.08 16
3 C 0.05 1.67 5.30 71.98 0.38 2.05 16
4 C 0.06 2.37 5.39 86.38 0.47 2.83 16
5 N -0.45 -23.83 2.59 -639.08 -1.65 -25.48 16
6 C -0.34 -20.12 8.74 84.09 0.74 -19.38 16
7 H 0.10 5.69 6.17 -2.91 -0.02 5.67 16
8 C 0.01 0.73 4.27 84.95 0.36 1.09 16
9 N -0.88 -57.56 11.97 21.68 0.26 -57.30 16
10 Si 0.97 49.46 29.61 68.60 2.03 51.49 16
11 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16
12 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16
13 H -0.25 -11.70 7.11 99.48 0.71 -10.99 16
14 C 0.49 27.85 6.47 86.71 0.56 28.42 16
15 O -0.60 -40.10 14.06 -4.06 -0.06 -40.16 16
16 C -0.17 -7.54 5.54 -20.05 -0.11 -7.65 16
17 C -0.10 -2.99 7.46 22.53 0.17 -2.82 16
18 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16
19 C -0.07 -1.31 10.04 22.32 0.22 -1.08 16
20 C -0.16 -4.50 10.01 22.28 0.22 -4.27 16
21 C 0.09 3.98 7.24 22.68 0.16 4.15 16
22 F -0.16 -8.03 16.08 44.97 0.72 -7.31 16
23 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16
24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16
26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
27 H 0.04 1.40 7.57 -2.39 -0.02 1.38 16
28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16
29 H 0.13 4.29 3.54 -6.25 -0.02 4.27 16
30 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16
31 H 0.16 4.31 3.68 -2.91 -0.01 4.30 16
32 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16
33 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16
34 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16
Total: -1.00 -89.95 289.74 5.80 -84.15
By element:
Atomic # 1 Polarization: 6.44 SS G_CDS: 1.11 Total: 7.56 kcal
Atomic # 6 Polarization: -1.51 SS G_CDS: 4.65 Total: 3.13 kcal
Atomic # 7 Polarization: -81.39 SS G_CDS: -1.39 Total: -82.78 kcal
Atomic # 8 Polarization: -54.92 SS G_CDS: -1.32 Total: -56.24 kcal
Atomic # 9 Polarization: -8.03 SS G_CDS: 0.72 Total: -7.31 kcal
Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.49 kcal
Total: -89.95 5.80 -84.15 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000316982309.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.302 kcal
(2) G-P(sol) polarization free energy of solvation -89.951 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.150 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds