Wall clock time and date at job start Mon Mar 30 2020 01:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99819 * 2 1 4 4 C 1.52994 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47050 * 65.00005 * 4 3 2 6 6 C 1.36886 * 119.99846 * 286.66816 * 5 4 3 7 7 H 1.08007 * 120.00023 * 41.22571 * 6 5 4 8 8 C 1.39026 * 120.00374 * 221.21391 * 6 5 4 9 9 N 1.31378 * 119.99827 * 21.94568 * 8 6 5 10 10 Si 1.86800 * 120.00457 * 201.94333 * 8 6 5 11 11 H 1.48499 * 109.47204 * 64.99850 * 10 8 6 12 12 H 1.48500 * 109.47196 * 185.00103 * 10 8 6 13 13 H 1.48498 * 109.47034 * 304.99762 * 10 8 6 14 14 C 1.34777 * 119.99773 * 106.67309 * 5 4 3 15 15 O 1.21608 * 119.99650 * 186.94066 * 14 5 4 16 16 C 1.47581 * 119.99976 * 6.93867 * 14 5 4 17 17 C 1.39724 * 120.17357 * 326.16505 * 16 14 5 18 18 C 1.37835 * 119.86800 * 179.97438 * 17 16 14 19 19 C 1.38472 * 120.22779 * 0.02562 * 18 17 16 20 20 C 1.38224 * 120.34889 * 0.02562 * 19 18 17 21 21 C 1.38286 * 120.12493 * 359.97419 * 20 19 18 22 22 F 1.35101 * 120.11684 * 180.02562 * 21 20 19 23 23 H 1.09006 * 109.47008 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47589 * 299.99928 * 1 2 3 25 25 H 1.09000 * 109.47154 * 60.00318 * 1 2 3 26 26 H 1.09000 * 109.47100 * 59.99668 * 3 2 1 27 27 H 1.09000 * 109.47253 * 300.00036 * 3 2 1 28 28 H 1.09001 * 109.47335 * 304.99910 * 4 3 2 29 29 H 1.09002 * 109.47241 * 185.00048 * 4 3 2 30 30 H 0.96999 * 120.00378 * 184.94929 * 9 8 6 31 31 H 1.07994 * 120.06162 * 0.25537 * 17 16 14 32 32 H 1.08001 * 119.88367 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.82579 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.93373 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.7780 -0.7744 -1.4583 7 1 2.8472 -1.2347 -1.1611 8 6 4.7742 -1.5413 -2.0518 9 7 6.0223 -1.1320 -2.0243 10 14 4.3383 -3.1537 -2.8882 11 1 3.4755 -2.8830 -4.0660 12 1 5.5820 -3.8335 -3.3314 13 1 3.6110 -4.0266 -1.9319 14 6 4.5782 1.3108 -2.1980 15 8 4.8305 0.8267 -3.2847 16 6 4.9307 2.7159 -1.9162 17 6 4.1180 3.4906 -1.0847 18 6 4.4535 4.8021 -0.8253 19 6 5.5927 5.3544 -1.3864 20 6 6.4027 4.5966 -2.2112 21 6 6.0798 3.2793 -2.4812 22 9 6.8719 2.5387 -3.2869 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5686 0.8427 29 1 3.9784 2.1766 0.0902 30 1 6.7064 -1.6293 -2.4993 31 1 3.2312 3.0614 -0.6424 32 1 3.8257 5.4011 -0.1823 33 1 5.8492 6.3828 -1.1791 34 1 7.2894 5.0342 -2.6456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316982309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:14 Heat of formation + Delta-G solvation = -80.848880 kcal Electronic energy + Delta-G solvation = -20976.560716 eV Core-core repulsion = 17597.057766 eV Total energy + Delta-G solvation = -3379.502950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.77422 -41.07671 -39.03058 -38.51701 -36.14147 -34.29856 -32.06489 -31.41688 -30.43963 -27.36347 -26.75529 -24.59391 -23.64104 -23.37418 -21.39304 -18.97897 -18.40690 -18.02610 -17.37179 -17.14560 -16.77421 -16.59111 -16.39634 -15.88780 -15.83130 -15.57879 -15.16710 -14.83248 -14.29051 -13.97718 -13.53520 -13.39623 -13.15889 -12.86230 -12.76468 -12.67896 -12.61882 -12.51591 -12.17777 -12.02743 -11.65595 -10.78828 -10.44111 -10.24581 -9.82865 -9.62645 -9.17873 -8.23588 -5.93697 -0.00088 0.24333 1.33455 1.43178 1.46724 2.19951 2.38650 2.78199 3.02246 3.12912 3.30227 3.40657 3.78888 3.95316 4.11460 4.27554 4.35486 4.36176 4.41735 4.52723 4.55691 4.63361 4.66685 4.90285 4.91013 5.08681 5.14643 5.20723 5.34505 5.41732 5.61097 5.96917 6.26514 6.45187 6.99396 7.19931 7.63898 8.27169 8.83894 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.009245 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.732207 B = 3027.885966 C = 4530.253123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.054 3.946 4 C 0.061 3.939 5 N -0.446 5.446 6 C -0.340 4.340 7 H 0.099 0.901 8 C 0.012 3.988 9 N -0.875 5.875 10 Si 0.966 3.034 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.252 1.252 14 C 0.492 3.508 15 O -0.596 6.596 16 C -0.172 4.172 17 C -0.100 4.100 18 C -0.119 4.119 19 C -0.069 4.069 20 C -0.159 4.159 21 C 0.094 3.906 22 F -0.155 7.155 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.132 0.868 30 H 0.257 0.743 31 H 0.164 0.836 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 15.026 8.127 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.023 4.023 4 C -0.062 4.062 5 N -0.166 5.166 6 C -0.467 4.467 7 H 0.117 0.883 8 C -0.193 4.193 9 N -0.511 5.511 10 Si 0.791 3.209 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.176 1.176 14 C 0.283 3.717 15 O -0.480 6.480 16 C -0.176 4.176 17 C -0.118 4.118 18 C -0.137 4.137 19 C -0.086 4.086 20 C -0.178 4.178 21 C 0.074 3.926 22 F -0.134 7.134 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.181 0.819 32 H 0.200 0.800 33 H 0.201 0.799 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.773 14.457 7.600 17.682 hybrid contribution 0.353 -1.446 -1.113 1.858 sum -6.420 13.011 6.488 15.893 Atomic orbital electron populations 1.22878 0.80493 1.03168 1.00590 1.88089 1.20656 1.28281 1.95374 1.23010 0.92944 0.85249 1.01146 1.22835 0.94299 1.01080 0.87942 1.43326 1.53153 1.07222 1.12883 1.19551 1.00300 0.83402 1.43451 0.88310 1.26128 0.93857 1.01569 0.97757 1.69998 1.00931 1.42285 1.37924 0.85437 0.77294 0.79033 0.79176 1.21219 1.21438 1.17555 1.18479 0.83076 0.85487 0.84695 1.90557 1.57316 1.74167 1.25913 1.20543 0.98085 0.95728 1.03292 1.22041 0.99882 0.94921 0.94992 1.21702 0.98028 0.93427 1.00505 1.21669 0.92661 1.01255 0.93063 1.21441 1.03506 0.90402 1.02452 1.18448 0.89987 0.91232 0.92941 1.91471 1.72797 1.77924 1.71220 0.89702 0.91901 0.94324 0.88624 0.93683 0.92339 0.85068 0.93433 0.81887 0.79961 0.79945 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -14.82 8.47 -148.98 -1.26 -16.08 16 3 C 0.05 1.67 5.30 71.98 0.38 2.05 16 4 C 0.06 2.37 5.39 86.38 0.47 2.83 16 5 N -0.45 -23.83 2.59 -639.08 -1.65 -25.48 16 6 C -0.34 -20.12 8.74 84.09 0.74 -19.38 16 7 H 0.10 5.69 6.17 -2.91 -0.02 5.67 16 8 C 0.01 0.73 4.27 84.95 0.36 1.09 16 9 N -0.88 -57.56 11.97 21.68 0.26 -57.30 16 10 Si 0.97 49.46 29.61 68.60 2.03 51.49 16 11 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 12 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 13 H -0.25 -11.70 7.11 99.48 0.71 -10.99 16 14 C 0.49 27.85 6.47 86.71 0.56 28.42 16 15 O -0.60 -40.10 14.06 -4.06 -0.06 -40.16 16 16 C -0.17 -7.54 5.54 -20.05 -0.11 -7.65 16 17 C -0.10 -2.99 7.46 22.53 0.17 -2.82 16 18 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16 19 C -0.07 -1.31 10.04 22.32 0.22 -1.08 16 20 C -0.16 -4.50 10.01 22.28 0.22 -4.27 16 21 C 0.09 3.98 7.24 22.68 0.16 4.15 16 22 F -0.16 -8.03 16.08 44.97 0.72 -7.31 16 23 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.40 7.57 -2.39 -0.02 1.38 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.13 4.29 3.54 -6.25 -0.02 4.27 16 30 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 31 H 0.16 4.31 3.68 -2.91 -0.01 4.30 16 32 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -89.95 289.74 5.80 -84.15 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.11 Total: 7.56 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.65 Total: 3.13 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.39 Total: -82.78 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -1.32 Total: -56.24 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.72 Total: -7.31 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.49 kcal Total: -89.95 5.80 -84.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316982309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.302 kcal (2) G-P(sol) polarization free energy of solvation -89.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds