Wall clock time and date at job start Mon Mar 30 2020 01:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00151 * 2 1 4 4 C 1.52999 * 109.47473 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46840 * 64.99966 * 4 3 2 6 6 C 1.36897 * 119.99921 * 279.24341 * 5 4 3 7 7 H 1.08001 * 119.99554 * 37.03610 * 6 5 4 8 8 C 1.39034 * 119.99732 * 217.03572 * 6 5 4 9 9 N 1.31368 * 119.99970 * 26.00108 * 8 6 5 10 10 Si 1.86798 * 119.99843 * 206.00555 * 8 6 5 11 11 H 1.48498 * 109.46973 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47410 * 119.99984 * 10 8 6 13 13 H 1.48503 * 109.47000 * 240.00248 * 10 8 6 14 14 C 1.34777 * 119.99999 * 99.24073 * 5 4 3 15 15 O 1.21606 * 120.00142 * 186.85576 * 14 5 4 16 16 C 1.47615 * 119.99697 * 6.86040 * 14 5 4 17 17 C 1.39715 * 120.12535 * 331.27266 * 16 14 5 18 18 C 1.37821 * 119.87043 * 180.25519 * 17 16 14 19 19 C 1.38664 * 120.12561 * 359.47540 * 18 17 16 20 20 F 1.35106 * 119.87710 * 180.28089 * 19 18 17 21 21 C 1.38675 * 120.25380 * 0.25161 * 19 18 17 22 22 C 1.37823 * 120.12385 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47163 * 299.99767 * 1 2 3 25 25 H 1.08997 * 109.47249 * 60.00141 * 1 2 3 26 26 H 1.09000 * 109.46937 * 59.99594 * 3 2 1 27 27 H 1.09005 * 109.46763 * 300.00139 * 3 2 1 28 28 H 1.08992 * 109.47007 * 305.00244 * 4 3 2 29 29 H 1.08997 * 109.47203 * 184.99825 * 4 3 2 30 30 H 0.96998 * 119.99879 * 184.98033 * 9 8 6 31 31 H 1.07999 * 120.06520 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.93666 * 179.75225 * 18 17 16 33 33 H 1.07999 * 119.93787 * 180.02562 * 21 19 18 34 34 H 1.07995 * 120.06116 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.9178 -0.7958 -1.3986 7 1 3.0942 -1.3499 -0.9732 8 6 4.9184 -1.4632 -2.0961 9 7 6.1237 -0.9463 -2.1709 10 14 4.5485 -3.0949 -2.9269 11 1 3.1273 -3.4575 -2.6949 12 1 4.7976 -2.9752 -4.3859 13 1 5.4268 -4.1494 -2.3596 14 6 4.4405 1.3316 -2.2570 15 8 4.6890 0.8326 -3.3377 16 6 4.6468 2.7781 -2.0469 17 6 3.8643 3.4706 -1.1194 18 6 4.0578 4.8221 -0.9312 19 6 5.0342 5.4924 -1.6524 20 9 5.2234 6.8162 -1.4598 21 6 5.8176 4.8091 -2.5702 22 6 5.6291 3.4586 -2.7708 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5685 0.8426 29 1 3.9785 2.1765 0.0902 30 1 6.8019 -1.3741 -2.7168 31 1 3.1068 2.9485 -0.5536 32 1 3.4509 5.3592 -0.2174 33 1 6.5769 5.3361 -3.1289 34 1 6.2401 2.9274 -3.4855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317007674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:18 Heat of formation + Delta-G solvation = -50.664440 kcal Electronic energy + Delta-G solvation = -20640.662574 eV Core-core repulsion = 17262.468519 eV Total energy + Delta-G solvation = -3378.194054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.69437 -39.67180 -37.60158 -36.93617 -34.40728 -32.38363 -30.79131 -29.96327 -29.01744 -26.05521 -24.94037 -22.93728 -22.63387 -21.87837 -19.69082 -17.49880 -17.17587 -16.40371 -16.05877 -15.77387 -15.39178 -15.30061 -14.75924 -14.41972 -14.07920 -13.98180 -13.43085 -13.36605 -13.02007 -12.66287 -12.38254 -11.85691 -11.69583 -11.38599 -11.36947 -11.09662 -10.89609 -10.72569 -10.45210 -10.30189 -10.07217 -9.26249 -8.77780 -8.77362 -8.33954 -8.10419 -7.20223 -6.16754 -3.75533 1.25522 1.51902 3.34891 3.46248 3.48366 3.64912 4.17587 4.27512 4.48498 4.60706 4.85517 5.00151 5.07843 5.26720 5.39809 5.46380 5.55091 5.58480 5.65507 5.68011 5.79419 5.87788 5.92266 5.97914 6.17508 6.28540 6.37456 6.53345 6.56321 6.80703 7.15727 7.59458 7.73991 8.26170 8.99242 9.18161 9.62889 10.22432 10.91520 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.007351 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.962493 B = 3807.935180 C = 5095.136707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.044 3.956 4 C 0.064 3.936 5 N -0.426 5.426 6 C -0.328 4.328 7 H 0.098 0.902 8 C 0.070 3.930 9 N -0.825 5.825 10 Si 0.906 3.094 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.288 1.288 14 C 0.495 3.505 15 O -0.541 6.541 16 C -0.097 4.097 17 C -0.115 4.115 18 C -0.160 4.160 19 C 0.086 3.914 20 F -0.147 7.147 21 C -0.159 4.159 22 C -0.047 4.047 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.265 0.735 31 H 0.160 0.840 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 9.169 4.877 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.034 4.034 4 C -0.060 4.060 5 N -0.145 5.145 6 C -0.454 4.454 7 H 0.115 0.885 8 C -0.141 4.141 9 N -0.459 5.459 10 Si 0.732 3.268 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.214 1.214 14 C 0.285 3.715 15 O -0.421 6.421 16 C -0.102 4.102 17 C -0.133 4.133 18 C -0.179 4.179 19 C 0.067 3.933 20 F -0.126 7.126 21 C -0.178 4.178 22 C -0.066 4.066 23 H 0.099 0.901 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.422 8.690 4.332 11.121 hybrid contribution -0.198 -0.147 -0.319 0.404 sum -5.620 8.543 4.013 10.985 Atomic orbital electron populations 1.22696 0.82684 1.02273 0.99060 1.88130 1.18082 1.26806 1.95051 1.23110 0.95691 0.85510 0.99080 1.22581 0.91545 1.00559 0.91342 1.43204 1.56183 1.06182 1.08974 1.19355 1.06857 0.80446 1.38766 0.88459 1.25149 0.93244 0.98366 0.97319 1.69934 1.01491 1.41075 1.33380 0.86258 0.78591 0.82107 0.79808 1.19386 1.20689 1.21426 1.17603 0.84981 0.83825 0.85141 1.90604 1.53377 1.73304 1.24794 1.20675 0.96545 0.96638 0.96302 1.22253 1.00721 0.93159 0.97190 1.21021 0.99580 0.95134 1.02193 1.17847 0.98657 0.77499 0.99332 1.91454 1.94684 1.32086 1.94394 1.21048 1.01440 0.95195 1.00118 1.21137 0.95763 0.92385 0.97348 0.90058 0.94932 0.94566 0.93542 0.93383 0.90553 0.87662 0.92488 0.82297 0.85014 0.84964 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.65 8.97 -35.23 -0.32 -6.97 16 3 C 0.04 0.71 5.08 37.16 0.19 0.90 16 4 C 0.06 1.21 5.32 -4.04 -0.02 1.19 16 5 N -0.43 -10.55 2.57 -115.96 -0.30 -10.85 16 6 C -0.33 -9.01 8.83 -15.00 -0.13 -9.14 16 7 H 0.10 2.65 6.70 -52.49 -0.35 2.29 16 8 C 0.07 1.97 4.12 -17.45 -0.07 1.90 16 9 N -0.82 -24.31 11.89 55.50 0.66 -23.65 16 10 Si 0.91 22.19 29.63 -169.99 -5.04 17.15 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.50 12.63 6.66 -12.43 -0.08 12.55 16 15 O -0.54 -16.00 14.46 5.27 0.08 -15.92 16 16 C -0.10 -1.99 5.62 -104.96 -0.59 -2.58 16 17 C -0.11 -1.88 7.52 -39.18 -0.29 -2.18 16 18 C -0.16 -2.30 10.01 -39.58 -0.40 -2.70 16 19 C 0.09 1.31 7.31 -39.26 -0.29 1.02 16 20 F -0.15 -2.15 17.26 2.25 0.04 -2.11 16 21 C -0.16 -2.48 10.01 -39.57 -0.40 -2.88 16 22 C -0.05 -0.88 9.59 -39.18 -0.38 -1.26 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.78 7.41 -51.93 -0.38 0.39 16 28 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 29 H 0.11 1.77 3.83 -54.88 -0.21 1.56 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.16 2.37 2.70 -52.49 -0.14 2.23 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.14 2.71 7.91 -52.49 -0.42 2.29 16 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -33.23 290.84 -5.44 -38.66 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.60 Total: 0.96 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.35 Total: -1.65 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.36 Total: -34.50 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.24 Total: -22.89 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.04 Total: 17.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.23 -5.44 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317007674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.004 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds