Wall clock time and date at job start Mon Mar 30 2020 01:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00151 * 2 1 4 4 C 1.52999 * 109.47473 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46840 * 64.99966 * 4 3 2 6 6 C 1.36897 * 119.99921 * 279.24341 * 5 4 3 7 7 H 1.08001 * 119.99554 * 37.03610 * 6 5 4 8 8 C 1.39034 * 119.99732 * 217.03572 * 6 5 4 9 9 N 1.31368 * 119.99970 * 26.00108 * 8 6 5 10 10 Si 1.86798 * 119.99843 * 206.00555 * 8 6 5 11 11 H 1.48498 * 109.46973 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47410 * 119.99984 * 10 8 6 13 13 H 1.48503 * 109.47000 * 240.00248 * 10 8 6 14 14 C 1.34777 * 119.99999 * 99.24073 * 5 4 3 15 15 O 1.21606 * 120.00142 * 186.85576 * 14 5 4 16 16 C 1.47615 * 119.99697 * 6.86040 * 14 5 4 17 17 C 1.39715 * 120.12535 * 331.27266 * 16 14 5 18 18 C 1.37821 * 119.87043 * 180.25519 * 17 16 14 19 19 C 1.38664 * 120.12561 * 359.47540 * 18 17 16 20 20 F 1.35106 * 119.87710 * 180.28089 * 19 18 17 21 21 C 1.38675 * 120.25380 * 0.25161 * 19 18 17 22 22 C 1.37823 * 120.12385 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47163 * 299.99767 * 1 2 3 25 25 H 1.08997 * 109.47249 * 60.00141 * 1 2 3 26 26 H 1.09000 * 109.46937 * 59.99594 * 3 2 1 27 27 H 1.09005 * 109.46763 * 300.00139 * 3 2 1 28 28 H 1.08992 * 109.47007 * 305.00244 * 4 3 2 29 29 H 1.08997 * 109.47203 * 184.99825 * 4 3 2 30 30 H 0.96998 * 119.99879 * 184.98033 * 9 8 6 31 31 H 1.07999 * 120.06520 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.93666 * 179.75225 * 18 17 16 33 33 H 1.07999 * 119.93787 * 180.02562 * 21 19 18 34 34 H 1.07995 * 120.06116 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 3.9178 -0.7958 -1.3986 7 1 3.0942 -1.3499 -0.9732 8 6 4.9184 -1.4632 -2.0961 9 7 6.1237 -0.9463 -2.1709 10 14 4.5485 -3.0949 -2.9269 11 1 3.1273 -3.4575 -2.6949 12 1 4.7976 -2.9752 -4.3859 13 1 5.4268 -4.1494 -2.3596 14 6 4.4405 1.3316 -2.2570 15 8 4.6890 0.8326 -3.3377 16 6 4.6468 2.7781 -2.0469 17 6 3.8643 3.4706 -1.1194 18 6 4.0578 4.8221 -0.9312 19 6 5.0342 5.4924 -1.6524 20 9 5.2234 6.8162 -1.4598 21 6 5.8176 4.8091 -2.5702 22 6 5.6291 3.4586 -2.7708 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5685 0.8426 29 1 3.9785 2.1765 0.0902 30 1 6.8019 -1.3741 -2.7168 31 1 3.1068 2.9485 -0.5536 32 1 3.4509 5.3592 -0.2174 33 1 6.5769 5.3361 -3.1289 34 1 6.2401 2.9274 -3.4855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317007674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:17 Heat of formation + Delta-G solvation = -72.743331 kcal Electronic energy + Delta-G solvation = -20641.619986 eV Core-core repulsion = 17262.468519 eV Total energy + Delta-G solvation = -3379.151467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.89594 -41.25976 -38.97481 -38.50581 -36.21215 -34.29182 -32.20796 -31.46495 -30.51884 -27.32555 -26.73509 -24.43576 -23.98267 -23.34219 -21.39105 -18.99591 -18.73824 -18.03241 -17.47271 -17.07274 -16.76003 -16.58474 -16.41964 -15.91334 -15.78060 -15.42035 -15.12021 -14.68629 -14.54285 -14.06405 -13.76071 -13.49193 -13.28750 -13.05250 -12.76393 -12.68639 -12.56375 -12.47934 -12.09592 -11.98429 -11.59629 -10.81881 -10.44700 -10.20865 -10.05631 -9.61084 -9.19963 -8.25550 -5.87784 -0.12299 0.23370 1.36868 1.44814 1.53522 2.14838 2.36113 2.80587 2.97982 3.14449 3.21842 3.32233 3.74200 3.89302 3.97312 4.22535 4.27280 4.34672 4.39054 4.51940 4.53402 4.62742 4.66178 4.87772 4.91371 4.94524 5.03963 5.09651 5.18071 5.42670 5.61122 5.85808 6.24570 6.43906 6.98592 7.20547 7.66073 8.28641 8.82537 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.007351 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.962493 B = 3807.935180 C = 5095.136707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.047 3.953 4 C 0.059 3.941 5 N -0.443 5.443 6 C -0.341 4.341 7 H 0.094 0.906 8 C 0.020 3.980 9 N -0.865 5.865 10 Si 0.960 3.040 11 H -0.259 1.259 12 H -0.296 1.296 13 H -0.275 1.275 14 C 0.488 3.512 15 O -0.598 6.598 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.142 4.142 19 C 0.098 3.902 20 F -0.137 7.137 21 C -0.151 4.151 22 C -0.063 4.063 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.259 0.741 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 11.700 6.679 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.030 4.030 4 C -0.064 4.064 5 N -0.161 5.161 6 C -0.468 4.468 7 H 0.112 0.888 8 C -0.186 4.186 9 N -0.501 5.501 10 Si 0.785 3.215 11 H -0.182 1.182 12 H -0.223 1.223 13 H -0.201 1.201 14 C 0.278 3.722 15 O -0.482 6.482 16 C -0.134 4.134 17 C -0.122 4.122 18 C -0.160 4.160 19 C 0.079 3.921 20 F -0.116 7.116 21 C -0.169 4.169 22 C -0.082 4.082 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.148 0.852 30 H 0.068 0.932 31 H 0.194 0.806 32 H 0.195 0.805 33 H 0.176 0.824 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.098 11.232 6.186 14.656 hybrid contribution 0.250 -0.709 -0.835 1.123 sum -6.847 10.523 5.352 13.648 Atomic orbital electron populations 1.22882 0.80383 1.03209 1.00614 1.88062 1.20720 1.28153 1.95418 1.23098 0.93209 0.85375 1.01312 1.22868 0.93996 1.01147 0.88342 1.43386 1.56311 1.05578 1.10838 1.19484 1.06378 0.82070 1.38861 0.88843 1.25932 0.93238 1.01354 0.98057 1.70016 1.02227 1.42943 1.34875 0.85427 0.79065 0.79223 0.77810 1.18244 1.22287 1.20062 1.18436 0.83284 0.85980 0.84462 1.90541 1.55422 1.75173 1.27100 1.20391 0.99413 0.94046 0.99596 1.22311 0.99959 0.94066 0.95841 1.21397 0.98873 0.93979 1.01754 1.17942 0.97998 0.77793 0.98410 1.91496 1.94546 1.31357 1.94180 1.21188 1.01853 0.93715 1.00157 1.21020 0.95951 0.93786 0.97452 0.89643 0.91920 0.94296 0.88605 0.93454 0.91420 0.85228 0.93162 0.80628 0.80522 0.82402 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -14.26 8.97 -148.98 -1.34 -15.60 16 3 C 0.05 1.41 5.08 71.98 0.37 1.78 16 4 C 0.06 2.18 5.32 86.38 0.46 2.64 16 5 N -0.44 -22.37 2.57 -639.05 -1.64 -24.01 16 6 C -0.34 -19.31 8.83 84.09 0.74 -18.57 16 7 H 0.09 5.23 6.70 -2.91 -0.02 5.21 16 8 C 0.02 1.19 4.12 84.95 0.35 1.54 16 9 N -0.86 -53.54 11.89 21.68 0.26 -53.29 16 10 Si 0.96 47.33 29.63 68.60 2.03 49.36 16 11 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 13 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 14 C 0.49 25.72 6.66 86.72 0.58 26.29 16 15 O -0.60 -37.40 14.46 -4.05 -0.06 -37.46 16 16 C -0.13 -5.32 5.62 -20.09 -0.11 -5.44 16 17 C -0.10 -3.10 7.52 22.53 0.17 -2.93 16 18 C -0.14 -3.35 10.01 22.27 0.22 -3.12 16 19 C 0.10 2.55 7.31 22.48 0.16 2.72 16 20 F -0.14 -3.33 17.26 44.97 0.78 -2.55 16 21 C -0.15 -4.34 10.01 22.28 0.22 -4.12 16 22 C -0.06 -2.36 9.59 22.53 0.22 -2.14 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 1.41 7.41 -2.38 -0.02 1.40 16 28 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 29 H 0.13 4.07 3.83 -5.16 -0.02 4.05 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.18 4.61 2.70 -2.91 -0.01 4.60 16 32 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.12 4.83 7.91 -2.91 -0.02 4.80 16 Total: -1.00 -77.09 290.84 5.77 -71.32 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.12 Total: 11.70 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 4.63 Total: 0.52 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -1.38 Total: -77.30 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -1.40 Total: -53.06 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.09 5.77 -71.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317007674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.423 kcal (2) G-P(sol) polarization free energy of solvation -77.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds