Wall clock time and date at job start Mon Mar 30 2020 01:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42893 * 114.00004 * 2 1 4 4 C 1.53003 * 109.47264 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46920 * 65.00226 * 4 3 2 6 6 C 1.36870 * 119.99820 * 83.82379 * 5 4 3 7 7 H 1.08007 * 119.99839 * 219.51129 * 6 5 4 8 8 C 1.39042 * 120.00195 * 39.51372 * 6 5 4 9 9 N 1.31366 * 120.00113 * 18.92283 * 8 6 5 10 10 Si 1.86798 * 120.00285 * 198.93242 * 8 6 5 11 11 H 1.48506 * 109.47167 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47532 * 119.99357 * 10 8 6 13 13 H 1.48499 * 109.47037 * 239.99796 * 10 8 6 14 14 C 1.34781 * 120.00300 * 263.83051 * 5 4 3 15 15 O 1.21588 * 119.99658 * 4.58809 * 14 5 4 16 16 C 1.47733 * 119.99886 * 184.59508 * 14 5 4 17 17 C 1.39659 * 120.14253 * 22.44899 * 16 14 5 18 18 C 1.37929 * 119.89940 * 179.72277 * 17 16 14 19 19 C 1.38352 * 120.17469 * 0.57832 * 18 17 16 20 20 C 1.38563 * 120.28769 * 359.69693 * 19 18 17 21 21 F 1.35099 * 119.95876 * 180.02562 * 20 19 18 22 22 C 1.38192 * 120.09734 * 0.02562 * 20 19 18 23 23 H 1.08997 * 109.46695 * 59.99391 * 1 2 3 24 24 H 1.08995 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46466 * 299.99471 * 1 2 3 26 26 H 1.08999 * 109.47080 * 60.00801 * 3 2 1 27 27 H 1.08998 * 109.47654 * 300.00371 * 3 2 1 28 28 H 1.08995 * 109.47498 * 185.00324 * 4 3 2 29 29 H 1.09000 * 109.47238 * 305.00945 * 4 3 2 30 30 H 0.97000 * 120.00168 * 179.97438 * 9 8 6 31 31 H 1.08007 * 120.05028 * 0.02562 * 17 16 14 32 32 H 1.07990 * 119.90911 * 180.27472 * 18 17 16 33 33 H 1.08002 * 119.85539 * 179.71833 * 19 18 17 34 34 H 1.08004 * 120.09776 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1461 1.3303 -2.3723 7 1 3.8451 0.9495 -3.3371 8 6 4.7056 2.5990 -2.2693 9 7 5.4023 2.9252 -1.2045 10 14 4.4663 3.8398 -3.6451 11 1 3.6493 3.2302 -4.7250 12 1 3.7702 5.0393 -3.1144 13 1 5.7897 4.2361 -4.1899 14 6 4.2158 -0.7616 -1.2982 15 8 3.9857 -1.4558 -0.3268 16 6 4.7573 -1.3710 -2.5302 17 6 5.4512 -0.5866 -3.4542 18 6 5.9597 -1.1619 -4.6000 19 6 5.7738 -2.5113 -4.8420 20 6 5.0817 -3.2955 -3.9332 21 9 4.9045 -4.6126 -4.1760 22 6 4.5722 -2.7323 -2.7787 23 1 -0.3632 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 1.6888 1.8462 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.9785 2.1764 0.0903 29 1 3.8509 0.5683 0.8426 30 1 5.7930 3.8102 -1.1329 31 1 5.5936 0.4680 -3.2694 32 1 6.5000 -0.5563 -5.3124 33 1 6.1703 -2.9555 -5.7431 34 1 4.0331 -3.3436 -2.0701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317031465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:21 Heat of formation + Delta-G solvation = -84.505002 kcal Electronic energy + Delta-G solvation = -20611.902241 eV Core-core repulsion = 17232.240750 eV Total energy + Delta-G solvation = -3379.661491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.44795 -39.31348 -37.58417 -36.70061 -34.94074 -31.75789 -30.85872 -30.14450 -28.66006 -25.81494 -25.24633 -23.44219 -21.94263 -21.43570 -19.42291 -17.97968 -16.61606 -15.95093 -15.70335 -15.50096 -15.30936 -15.19112 -15.06340 -14.45519 -14.26612 -14.09258 -13.35554 -13.28912 -12.84733 -12.54790 -11.93399 -11.84208 -11.70394 -11.44992 -11.18143 -11.07334 -11.05126 -10.73291 -10.56449 -10.33537 -10.23891 -9.23147 -9.02104 -8.56792 -8.44167 -8.08550 -7.57218 -6.53722 -4.22464 1.48788 1.79178 2.99201 3.11528 3.15082 3.75186 3.94278 4.42678 4.49016 4.53843 4.84975 4.96272 5.32392 5.40572 5.64577 5.72040 5.83811 5.88992 5.98093 5.99427 6.05415 6.11442 6.30003 6.38700 6.56500 6.63686 6.83556 7.00582 7.07760 7.17425 7.29032 7.50979 7.78984 7.86422 8.24825 8.89951 9.38994 9.85864 10.45104 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.008713 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.460327 B = 3212.952460 C = 4624.334431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.051 3.949 4 C 0.113 3.887 5 N -0.428 5.428 6 C -0.337 4.337 7 H 0.096 0.904 8 C 0.041 3.959 9 N -0.854 5.854 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.514 3.486 15 O -0.583 6.583 16 C -0.070 4.070 17 C -0.090 4.090 18 C -0.118 4.118 19 C -0.150 4.150 20 C 0.069 3.931 21 F -0.150 7.150 22 C -0.113 4.113 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.273 0.727 31 H 0.183 0.817 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -1.041 -4.190 4.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.027 4.027 4 C -0.011 4.011 5 N -0.145 5.145 6 C -0.464 4.464 7 H 0.114 0.886 8 C -0.166 4.166 9 N -0.490 5.490 10 Si 0.735 3.265 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.303 3.697 15 O -0.468 6.468 16 C -0.073 4.073 17 C -0.108 4.108 18 C -0.136 4.136 19 C -0.170 4.170 20 C 0.050 3.950 21 F -0.129 7.129 22 C -0.133 4.133 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.199 0.801 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.340 -1.389 -3.602 4.514 hybrid contribution -0.416 0.735 -0.800 1.163 sum -2.756 -0.654 -4.402 5.235 Atomic orbital electron populations 1.22626 0.83288 1.01690 0.98881 1.88137 1.17597 1.28092 1.95092 1.23063 0.96309 0.84356 0.98958 1.21568 0.89766 1.02015 0.87760 1.43100 1.56588 1.04980 1.09854 1.19569 1.40362 0.98218 0.88299 0.88628 1.25437 0.94316 0.98865 0.97981 1.69824 1.28775 1.21470 1.28892 0.86134 0.78652 0.80577 0.81135 1.18856 1.20307 1.20322 1.18129 0.81066 0.83563 0.86913 1.90641 1.56636 1.62087 1.37413 1.19994 0.98853 0.92397 0.96083 1.23022 0.92616 1.03927 0.91272 1.21074 1.00373 0.93535 0.98643 1.21147 1.01402 0.94910 0.99499 1.17486 1.03017 0.77845 0.96688 1.91439 1.94150 1.32710 1.94567 1.21203 1.00546 0.95600 0.95987 0.94899 0.90561 0.95103 0.94290 0.93251 0.86256 0.91408 0.91624 0.80063 0.85430 0.85700 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.37 -7.94 10.07 -35.23 -0.35 -8.29 16 3 C 0.05 1.03 6.24 37.16 0.23 1.26 16 4 C 0.11 2.59 5.48 -4.04 -0.02 2.57 16 5 N -0.43 -10.41 2.47 -115.92 -0.29 -10.69 16 6 C -0.34 -7.84 5.88 -15.00 -0.09 -7.93 16 7 H 0.10 2.19 6.34 -52.48 -0.33 1.86 16 8 C 0.04 0.93 4.88 -17.45 -0.09 0.84 16 9 N -0.85 -20.42 11.37 55.50 0.63 -19.79 16 10 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 16 11 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 12 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 14 C 0.51 12.88 7.28 -12.38 -0.09 12.79 16 15 O -0.58 -15.94 15.72 5.29 0.08 -15.86 16 16 C -0.07 -1.54 5.64 -104.98 -0.59 -2.13 16 17 C -0.09 -1.79 7.87 -39.16 -0.31 -2.10 16 18 C -0.12 -1.94 10.03 -39.65 -0.40 -2.34 16 19 C -0.15 -2.40 10.02 -39.42 -0.39 -2.80 16 20 C 0.07 1.24 7.29 -39.48 -0.29 0.95 16 21 F -0.15 -2.61 17.26 2.25 0.04 -2.57 16 22 C -0.11 -2.30 9.57 -39.09 -0.37 -2.67 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.12 2.80 5.53 -51.93 -0.29 2.51 16 29 H 0.07 1.64 7.31 -51.93 -0.38 1.26 16 30 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.18 3.84 4.77 -52.48 -0.25 3.59 16 32 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.14 2.77 7.82 -52.48 -0.41 2.36 16 LS Contribution 295.89 15.07 4.46 4.46 Total: -1.00 -27.78 295.89 -5.51 -33.29 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.75 Total: 6.77 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.30 Total: 0.07 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.34 Total: -30.48 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.27 Total: -24.15 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.78 -5.51 -33.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317031465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.218 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds