Wall clock time and date at job start Mon Mar 30 2020 01:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42893 * 114.00004 * 2 1 4 4 C 1.53003 * 109.47264 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46920 * 65.00226 * 4 3 2 6 6 C 1.36870 * 119.99820 * 83.82379 * 5 4 3 7 7 H 1.08007 * 119.99839 * 219.51129 * 6 5 4 8 8 C 1.39042 * 120.00195 * 39.51372 * 6 5 4 9 9 N 1.31366 * 120.00113 * 18.92283 * 8 6 5 10 10 Si 1.86798 * 120.00285 * 198.93242 * 8 6 5 11 11 H 1.48506 * 109.47167 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47532 * 119.99357 * 10 8 6 13 13 H 1.48499 * 109.47037 * 239.99796 * 10 8 6 14 14 C 1.34781 * 120.00300 * 263.83051 * 5 4 3 15 15 O 1.21588 * 119.99658 * 4.58809 * 14 5 4 16 16 C 1.47733 * 119.99886 * 184.59508 * 14 5 4 17 17 C 1.39659 * 120.14253 * 22.44899 * 16 14 5 18 18 C 1.37929 * 119.89940 * 179.72277 * 17 16 14 19 19 C 1.38352 * 120.17469 * 0.57832 * 18 17 16 20 20 C 1.38563 * 120.28769 * 359.69693 * 19 18 17 21 21 F 1.35099 * 119.95876 * 180.02562 * 20 19 18 22 22 C 1.38192 * 120.09734 * 0.02562 * 20 19 18 23 23 H 1.08997 * 109.46695 * 59.99391 * 1 2 3 24 24 H 1.08995 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46466 * 299.99471 * 1 2 3 26 26 H 1.08999 * 109.47080 * 60.00801 * 3 2 1 27 27 H 1.08998 * 109.47654 * 300.00371 * 3 2 1 28 28 H 1.08995 * 109.47498 * 185.00324 * 4 3 2 29 29 H 1.09000 * 109.47238 * 305.00945 * 4 3 2 30 30 H 0.97000 * 120.00168 * 179.97438 * 9 8 6 31 31 H 1.08007 * 120.05028 * 0.02562 * 17 16 14 32 32 H 1.07990 * 119.90911 * 180.27472 * 18 17 16 33 33 H 1.08002 * 119.85539 * 179.71833 * 19 18 17 34 34 H 1.08004 * 120.09776 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1461 1.3303 -2.3723 7 1 3.8451 0.9495 -3.3371 8 6 4.7056 2.5990 -2.2693 9 7 5.4023 2.9252 -1.2045 10 14 4.4663 3.8398 -3.6451 11 1 3.6493 3.2302 -4.7250 12 1 3.7702 5.0393 -3.1144 13 1 5.7897 4.2361 -4.1899 14 6 4.2158 -0.7616 -1.2982 15 8 3.9857 -1.4558 -0.3268 16 6 4.7573 -1.3710 -2.5302 17 6 5.4512 -0.5866 -3.4542 18 6 5.9597 -1.1619 -4.6000 19 6 5.7738 -2.5113 -4.8420 20 6 5.0817 -3.2955 -3.9332 21 9 4.9045 -4.6126 -4.1760 22 6 4.5722 -2.7323 -2.7787 23 1 -0.3632 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 1.6888 1.8462 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.9785 2.1764 0.0903 29 1 3.8509 0.5683 0.8426 30 1 5.7930 3.8102 -1.1329 31 1 5.5936 0.4680 -3.2694 32 1 6.5000 -0.5563 -5.3124 33 1 6.1703 -2.9555 -5.7431 34 1 4.0331 -3.3436 -2.0701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317031465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:20 Heat of formation + Delta-G solvation = -100.714527 kcal Electronic energy + Delta-G solvation = -20612.605139 eV Core-core repulsion = 17232.240750 eV Total energy + Delta-G solvation = -3380.364389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.85507 -41.03122 -39.14317 -38.32415 -36.78837 -33.56947 -32.41714 -31.64482 -30.24718 -27.27450 -26.99974 -25.02258 -23.42602 -23.06591 -21.19692 -19.63022 -18.29281 -17.48872 -17.29587 -16.99609 -16.87839 -16.71697 -16.54020 -16.10985 -15.88349 -15.70856 -15.01775 -14.74483 -14.48519 -14.03192 -13.53548 -13.42009 -13.29458 -13.03561 -12.77628 -12.65747 -12.55235 -12.24967 -12.16695 -11.92490 -11.88842 -11.00763 -10.57377 -10.35882 -9.97083 -9.57604 -9.41169 -8.29858 -6.05006 -0.00737 0.32249 1.46112 1.54072 1.65578 2.10123 2.30924 2.78416 2.84334 3.01432 3.21437 3.40925 3.96285 3.98898 4.25181 4.31657 4.37424 4.44684 4.49779 4.52051 4.55918 4.63193 4.77561 4.89353 5.00708 5.17684 5.20203 5.25193 5.45075 5.56143 5.66275 5.96944 6.04889 6.36575 6.46484 7.09556 7.53453 8.02203 8.70987 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.008713 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.460327 B = 3212.952460 C = 4624.334431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.060 3.940 4 C 0.110 3.890 5 N -0.431 5.431 6 C -0.347 4.347 7 H 0.099 0.901 8 C 0.011 3.989 9 N -0.884 5.884 10 Si 0.976 3.024 11 H -0.258 1.258 12 H -0.279 1.279 13 H -0.273 1.273 14 C 0.494 3.506 15 O -0.624 6.624 16 C -0.099 4.099 17 C -0.099 4.099 18 C -0.102 4.102 19 C -0.128 4.128 20 C 0.069 3.931 21 F -0.145 7.145 22 C -0.128 4.128 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.043 0.957 30 H 0.277 0.723 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -0.422 -6.944 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.017 4.017 4 C -0.014 4.014 5 N -0.148 5.148 6 C -0.474 4.474 7 H 0.116 0.884 8 C -0.193 4.193 9 N -0.521 5.521 10 Si 0.799 3.201 11 H -0.181 1.181 12 H -0.204 1.204 13 H -0.198 1.198 14 C 0.285 3.715 15 O -0.513 6.513 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.147 4.147 20 C 0.050 3.950 21 F -0.124 7.124 22 C -0.148 4.148 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.132 0.868 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.185 0.815 32 H 0.187 0.813 33 H 0.187 0.813 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.184 -0.762 -6.365 6.772 hybrid contribution -0.448 0.493 0.055 0.668 sum -2.632 -0.269 -6.310 6.842 Atomic orbital electron populations 1.22857 0.80568 1.03012 1.00524 1.88085 1.20690 1.28623 1.95405 1.22903 0.94196 0.84435 1.00180 1.21553 0.92121 1.00835 0.86852 1.43327 1.55945 1.05086 1.10397 1.19740 1.40994 0.98534 0.88113 0.88370 1.26144 0.93356 0.99819 0.99976 1.69911 1.29393 1.22064 1.30682 0.85121 0.78609 0.77883 0.78450 1.18138 1.20448 1.19794 1.18763 0.81073 0.83872 0.87825 1.90580 1.58661 1.62943 1.39090 1.19849 1.01101 0.93318 0.95967 1.22868 0.93277 1.03181 0.92363 1.21455 0.98897 0.94113 0.97490 1.21582 0.98948 0.94321 0.99812 1.17556 1.02956 0.78219 0.96274 1.91452 1.94131 1.32428 1.94415 1.21119 1.01578 0.95034 0.97109 0.93837 0.89525 0.92725 0.91493 0.93305 0.86847 0.93876 0.91252 0.81543 0.81258 0.81309 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.41 -17.81 10.07 -148.98 -1.50 -19.31 16 3 C 0.06 2.47 6.24 71.98 0.45 2.92 16 4 C 0.11 5.28 5.48 86.38 0.47 5.76 16 5 N -0.43 -21.76 2.47 -638.93 -1.58 -23.34 16 6 C -0.35 -16.29 5.88 84.10 0.49 -15.80 16 7 H 0.10 4.50 6.34 -2.91 -0.02 4.48 16 8 C 0.01 0.52 4.88 84.96 0.41 0.93 16 9 N -0.88 -42.62 11.37 21.68 0.25 -42.37 16 10 Si 0.98 35.14 29.59 68.60 2.03 37.17 16 11 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 12 H -0.28 -10.08 7.11 99.48 0.71 -9.37 16 13 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 14 C 0.49 26.00 7.28 86.75 0.63 26.63 16 15 O -0.62 -36.36 15.72 -3.99 -0.06 -36.42 16 16 C -0.10 -4.48 5.64 -20.09 -0.11 -4.59 16 17 C -0.10 -3.83 7.87 22.54 0.18 -3.65 16 18 C -0.10 -2.97 10.03 22.22 0.22 -2.74 16 19 C -0.13 -3.55 10.02 22.37 0.22 -3.32 16 20 C 0.07 2.36 7.29 22.34 0.16 2.52 16 21 F -0.15 -4.78 17.26 44.97 0.78 -4.00 16 22 C -0.13 -5.29 9.57 22.59 0.22 -5.08 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.11 5.52 5.53 -2.39 -0.01 5.51 16 29 H 0.04 2.23 7.31 -2.39 -0.02 2.21 16 30 H 0.28 12.47 8.31 -92.71 -0.77 11.70 16 31 H 0.17 6.99 4.77 -2.91 -0.01 6.98 16 32 H 0.17 3.56 8.06 -2.92 -0.02 3.54 16 33 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 34 H 0.12 5.17 7.82 -2.91 -0.02 5.15 16 Total: -1.00 -62.52 295.89 5.64 -56.88 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 1.12 Total: 25.73 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.60 Total: 5.66 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -1.33 Total: -65.71 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -1.56 Total: -55.73 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.78 Total: -4.00 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -62.52 5.64 -56.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317031465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.833 kcal (2) G-P(sol) polarization free energy of solvation -62.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds