Wall clock time and date at job start Mon Mar 30 2020 00:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.50701 * 109.47149 * 239.99774 * 2 1 3 5 5 C 1.37706 * 123.34719 * 54.46428 * 4 2 1 6 6 C 1.33650 * 115.07379 * 179.76434 * 5 4 2 7 7 S 1.70612 * 110.94979 * 0.49091 * 6 5 4 8 8 C 1.36382 * 123.35129 * 234.76081 * 4 2 1 9 9 C 1.46985 * 125.44692 * 0.02562 * 8 4 2 10 10 O 1.35326 * 120.00158 * 5.77364 * 9 8 4 11 11 N 1.30436 * 119.99916 * 185.77394 * 9 8 4 12 12 C 1.46505 * 119.99885 * 174.88457 * 11 9 8 13 13 H 1.09002 * 109.46942 * 5.02125 * 12 11 9 14 14 C 1.52997 * 109.47149 * 245.01615 * 12 11 9 15 15 C 1.50701 * 109.46892 * 125.01508 * 12 11 9 16 16 H 1.07996 * 119.99928 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99733 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00224 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99722 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47212 * 60.00429 * 19 17 15 21 21 H 1.48508 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47190 * 300.00150 * 19 17 15 23 23 H 1.09003 * 109.47429 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47329 * 60.00299 * 1 2 3 25 25 H 1.09000 * 109.47231 * 300.00067 * 1 2 3 26 26 H 1.08998 * 109.47004 * 120.00331 * 2 1 3 27 27 H 1.09005 * 109.46690 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46878 * 299.99427 * 3 2 1 29 29 H 1.08992 * 109.47375 * 60.00206 * 3 2 1 30 30 H 1.08005 * 122.46757 * 0.02562 * 5 4 2 31 31 H 1.08003 * 124.52745 * 180.24878 * 6 5 4 32 32 H 0.96705 * 113.99942 * 95.05199 * 10 9 8 33 33 H 1.09005 * 109.47200 * 59.99967 * 14 12 11 34 34 H 1.08995 * 109.47090 * 180.02562 * 14 12 11 35 35 H 1.08993 * 109.47357 * 300.00171 * 14 12 11 36 36 H 0.97003 * 120.00313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6543 -0.3681 -2.5096 6 6 2.2044 -1.1053 -3.4792 7 16 3.2347 -2.2991 -2.8279 8 6 2.9020 -1.7602 -1.1876 9 6 3.4698 -2.3474 0.0343 10 8 3.0485 -1.9227 1.2482 11 7 4.3799 -3.2779 -0.0513 12 6 5.0266 -3.7838 1.1621 13 1 4.5593 -3.3332 2.0377 14 6 6.5134 -3.4242 1.1354 15 6 4.8731 -5.2816 1.2258 16 1 4.3469 -5.8044 0.4408 17 6 5.4053 -5.9846 2.2857 18 7 6.0465 -5.3481 3.2413 19 14 5.2156 -7.8413 2.3643 20 1 5.8521 -8.4549 1.1712 21 1 5.8710 -8.3542 3.5943 22 1 3.7726 -8.1908 2.3904 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 0.9672 0.4396 -2.7145 31 1 2.0183 -0.9667 -4.5340 32 1 2.3454 -2.4644 1.6322 33 1 6.6245 -2.3408 1.0893 34 1 6.9946 -3.8010 2.0379 35 1 6.9806 -3.8748 0.2598 36 1 6.4207 -5.8427 3.9872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330387494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:25 Heat of formation + Delta-G solvation = -4.076284 kcal Electronic energy + Delta-G solvation = -18151.981565 eV Core-core repulsion = 15342.020901 eV Total energy + Delta-G solvation = -2809.960664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.15939 -37.51938 -34.57660 -33.86212 -32.29691 -30.17498 -28.17443 -27.01494 -25.20496 -24.35919 -21.87874 -21.49451 -19.76727 -18.56173 -16.87447 -16.49564 -16.11672 -15.44458 -14.86984 -14.34063 -14.06470 -13.80288 -13.50404 -13.35145 -12.83854 -12.45863 -12.29827 -12.02824 -11.72454 -11.44797 -11.19024 -11.16248 -11.00615 -10.94890 -10.71734 -10.54560 -10.32557 -10.15888 -9.96785 -9.60201 -9.11142 -8.73765 -8.24783 -8.13209 -7.77959 -6.09294 -4.16215 0.92873 1.83752 2.35528 2.58115 3.27718 3.28495 3.32096 3.36780 4.32960 4.44521 4.97121 5.02728 5.21893 5.30224 5.33658 5.36473 5.66123 5.71102 5.78107 5.86441 5.91969 6.09044 6.27423 6.31211 6.38550 6.46630 6.64645 6.77561 6.90587 7.06688 7.14330 7.42956 7.69601 7.87689 8.00044 8.28020 8.76299 8.97766 9.49378 10.96812 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.005252 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.721794 B = 5330.127773 C = 5776.876553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.073 4.073 5 C -0.133 4.133 6 C -0.274 4.274 7 S 0.238 5.762 8 C -0.161 4.161 9 C 0.339 3.661 10 O -0.517 6.517 11 N -0.477 5.477 12 C 0.191 3.809 13 H 0.027 0.973 14 C -0.121 4.121 15 C -0.508 4.508 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.902 3.098 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.132 0.868 31 H 0.159 0.841 32 H 0.391 0.609 33 H 0.008 0.992 34 H 0.092 0.908 35 H 0.035 0.965 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 10.420 -8.571 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 C -0.194 4.194 4 C -0.088 4.088 5 C -0.165 4.165 6 C -0.413 4.413 7 S 0.506 5.494 8 C -0.281 4.281 9 C 0.110 3.890 10 O -0.323 6.323 11 N -0.203 5.203 12 C 0.084 3.916 13 H 0.045 0.955 14 C -0.179 4.179 15 C -0.547 4.547 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.203 1.203 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.177 0.823 32 H 0.248 0.752 33 H 0.027 0.973 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.815 9.084 -9.606 15.358 hybrid contribution -1.653 0.110 1.372 2.151 sum -9.468 9.194 -8.234 15.556 Atomic orbital electron populations 1.21818 0.95025 1.01621 1.01276 1.20291 0.95038 0.95961 0.96733 1.21746 1.01351 0.95259 1.01014 1.19309 0.97825 0.96053 0.95661 1.19664 1.03269 1.02309 0.91267 1.25200 1.07132 1.04847 1.04076 1.83394 1.41191 1.29622 0.95181 1.23161 1.05662 1.02902 0.96337 1.20642 0.94975 0.91429 0.81939 1.84648 1.58367 1.57296 1.31943 1.72662 1.06782 1.03367 1.37507 1.19431 0.91657 0.95359 0.85198 0.95509 1.21696 0.97286 0.96062 1.02880 1.20949 1.36109 0.90389 1.07218 0.92188 1.24927 0.94923 0.98841 0.95305 1.69881 1.36464 1.35712 1.10772 0.86498 0.78332 0.84785 0.77450 1.20072 1.21129 1.20276 0.92796 0.93078 0.92620 0.86836 0.92634 0.93247 0.92667 0.85023 0.82310 0.75202 0.97263 0.88983 0.94625 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.99 37.16 0.33 -1.15 16 2 C -0.06 -0.77 3.09 -91.77 -0.28 -1.06 16 3 C -0.14 -1.59 9.09 37.16 0.34 -1.26 16 4 C -0.07 -1.05 4.72 -105.48 -0.50 -1.55 16 5 C -0.13 -1.68 9.19 -41.38 -0.38 -2.06 16 6 C -0.27 -3.39 10.92 29.12 0.32 -3.08 16 7 S 0.24 3.58 22.86 -107.50 -2.46 1.12 16 8 C -0.16 -2.75 6.45 -36.71 -0.24 -2.99 16 9 C 0.34 6.81 7.75 -14.60 -0.11 6.69 16 10 O -0.52 -9.49 8.73 -17.67 -0.15 -9.64 16 11 N -0.48 -11.23 9.91 -54.09 -0.54 -11.77 16 12 C 0.19 5.04 2.90 -69.08 -0.20 4.84 16 13 H 0.03 0.75 6.74 -51.93 -0.35 0.40 16 14 C -0.12 -3.12 9.29 37.16 0.35 -2.78 16 15 C -0.51 -14.30 8.84 -34.44 -0.30 -14.61 16 16 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 19 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.49 7.49 -51.93 -0.39 0.10 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.11 1.61 4.68 -51.93 -0.24 1.37 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.52 8.01 -51.93 -0.42 0.10 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.13 1.38 7.66 -52.48 -0.40 0.98 16 31 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.39 5.87 9.06 45.56 0.41 6.28 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -30.31 312.96 -7.81 -38.12 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.21 Total: 3.18 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.78 Total: -17.37 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.09 Total: -36.46 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.15 Total: -9.64 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.46 Total: 1.12 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.31 -7.81 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.040 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds