Wall clock time and date at job start Mon Mar 30 2020 00:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.50701 * 109.47149 * 239.99774 * 2 1 3 5 5 C 1.37706 * 123.34719 * 54.46428 * 4 2 1 6 6 C 1.33650 * 115.07379 * 179.76434 * 5 4 2 7 7 S 1.70612 * 110.94979 * 0.49091 * 6 5 4 8 8 C 1.36382 * 123.35129 * 234.76081 * 4 2 1 9 9 C 1.46985 * 125.44692 * 0.02562 * 8 4 2 10 10 O 1.35326 * 120.00158 * 5.77364 * 9 8 4 11 11 N 1.30436 * 119.99916 * 185.77394 * 9 8 4 12 12 C 1.46505 * 119.99885 * 174.88457 * 11 9 8 13 13 H 1.09002 * 109.46942 * 5.02125 * 12 11 9 14 14 C 1.52997 * 109.47149 * 245.01615 * 12 11 9 15 15 C 1.50701 * 109.46892 * 125.01508 * 12 11 9 16 16 H 1.07996 * 119.99928 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99733 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00224 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99722 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47212 * 60.00429 * 19 17 15 21 21 H 1.48508 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47190 * 300.00150 * 19 17 15 23 23 H 1.09003 * 109.47429 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47329 * 60.00299 * 1 2 3 25 25 H 1.09000 * 109.47231 * 300.00067 * 1 2 3 26 26 H 1.08998 * 109.47004 * 120.00331 * 2 1 3 27 27 H 1.09005 * 109.46690 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46878 * 299.99427 * 3 2 1 29 29 H 1.08992 * 109.47375 * 60.00206 * 3 2 1 30 30 H 1.08005 * 122.46757 * 0.02562 * 5 4 2 31 31 H 1.08003 * 124.52745 * 180.24878 * 6 5 4 32 32 H 0.96705 * 113.99942 * 95.05199 * 10 9 8 33 33 H 1.09005 * 109.47200 * 59.99967 * 14 12 11 34 34 H 1.08995 * 109.47090 * 180.02562 * 14 12 11 35 35 H 1.08993 * 109.47357 * 300.00171 * 14 12 11 36 36 H 0.97003 * 120.00313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6543 -0.3681 -2.5096 6 6 2.2044 -1.1053 -3.4792 7 16 3.2347 -2.2991 -2.8279 8 6 2.9020 -1.7602 -1.1876 9 6 3.4698 -2.3474 0.0343 10 8 3.0485 -1.9227 1.2482 11 7 4.3799 -3.2779 -0.0513 12 6 5.0266 -3.7838 1.1621 13 1 4.5593 -3.3332 2.0377 14 6 6.5134 -3.4242 1.1354 15 6 4.8731 -5.2816 1.2258 16 1 4.3469 -5.8044 0.4408 17 6 5.4053 -5.9846 2.2857 18 7 6.0465 -5.3481 3.2413 19 14 5.2156 -7.8413 2.3643 20 1 5.8521 -8.4549 1.1712 21 1 5.8710 -8.3542 3.5943 22 1 3.7726 -8.1908 2.3904 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 0.9672 0.4396 -2.7145 31 1 2.0183 -0.9667 -4.5340 32 1 2.3454 -2.4644 1.6322 33 1 6.6245 -2.3408 1.0893 34 1 6.9946 -3.8010 2.0379 35 1 6.9806 -3.8748 0.2598 36 1 6.4207 -5.8427 3.9872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330387494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:24 Heat of formation + Delta-G solvation = -25.348106 kcal Electronic energy + Delta-G solvation = -18152.903980 eV Core-core repulsion = 15342.020901 eV Total energy + Delta-G solvation = -2810.883080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46540 -38.89774 -36.44640 -34.90517 -34.13980 -31.81231 -29.69419 -27.89090 -27.34180 -25.61883 -23.41564 -22.53736 -21.49415 -19.91441 -18.33246 -18.03898 -17.88561 -16.68291 -16.58541 -16.10115 -15.32124 -14.95464 -14.75604 -14.54012 -14.29636 -13.75262 -13.44328 -13.40613 -13.17488 -13.07181 -12.85940 -12.82624 -12.46499 -12.34247 -12.18912 -12.09149 -11.94895 -11.73848 -11.42889 -10.93252 -10.82104 -10.69996 -10.18168 -9.27309 -9.20571 -8.19624 -6.35260 -0.29003 0.66944 1.25027 1.32407 1.38890 1.40983 1.49485 1.98769 2.37200 2.97061 3.10103 3.64720 3.98307 4.21168 4.38091 4.42052 4.59498 4.65967 4.72972 4.86921 4.88788 4.90221 5.03241 5.06598 5.11585 5.16695 5.30351 5.34189 5.37801 5.48195 5.56892 5.60619 5.79164 5.88261 6.11956 6.45117 6.69619 7.18559 7.39688 8.85505 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.005252 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.721794 B = 5330.127773 C = 5776.876553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.044 4.044 5 C -0.144 4.144 6 C -0.239 4.239 7 S 0.209 5.791 8 C -0.218 4.218 9 C 0.367 3.633 10 O -0.523 6.523 11 N -0.527 5.527 12 C 0.198 3.802 13 H 0.000 1.000 14 C -0.111 4.111 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.017 3.983 18 N -0.915 5.915 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.271 1.271 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.196 0.804 32 H 0.405 0.595 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 11.596 -10.058 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.087 4.087 3 C -0.190 4.190 4 C -0.061 4.061 5 C -0.175 4.175 6 C -0.377 4.377 7 S 0.477 5.523 8 C -0.337 4.337 9 C 0.139 3.861 10 O -0.331 6.331 11 N -0.253 5.253 12 C 0.090 3.910 13 H 0.018 0.982 14 C -0.169 4.169 15 C -0.568 4.568 16 H 0.066 0.934 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.196 1.196 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.183 0.817 31 H 0.213 0.787 32 H 0.265 0.735 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.932 10.260 -11.092 18.082 hybrid contribution -1.151 -0.038 1.753 2.098 sum -11.083 10.222 -9.338 17.735 Atomic orbital electron populations 1.21773 0.92797 1.01728 1.02838 1.20378 0.96844 0.96306 0.95198 1.21725 1.00011 0.94596 1.02712 1.19727 0.95120 0.93968 0.97328 1.19959 1.04040 1.03386 0.90083 1.25632 1.04155 1.02136 1.05803 1.83510 1.42631 1.31344 0.94794 1.23081 1.09084 1.05711 0.95827 1.21138 0.92743 0.88960 0.83286 1.84593 1.59130 1.57439 1.31967 1.72647 1.10206 1.07155 1.35325 1.19109 0.91714 0.94543 0.85667 0.98203 1.21535 0.97590 0.96300 1.01468 1.21168 1.36564 0.91763 1.07289 0.93421 1.25734 0.94329 1.03428 0.94733 1.69995 1.36782 1.37412 1.11139 0.85483 0.78564 0.79143 0.77676 1.19752 1.20145 1.19567 0.93432 0.91360 0.91269 0.88757 0.94712 0.91346 0.91244 0.81671 0.78673 0.73530 0.96482 0.90933 0.95131 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.99 71.98 0.65 -1.77 16 2 C -0.07 -1.58 3.09 -11.54 -0.04 -1.62 16 3 C -0.13 -2.78 9.09 71.98 0.65 -2.12 16 4 C -0.04 -1.19 4.72 -20.42 -0.10 -1.29 16 5 C -0.14 -3.07 9.19 21.10 0.19 -2.87 16 6 C -0.24 -5.03 10.92 66.78 0.73 -4.30 16 7 S 0.21 6.11 22.86 -56.49 -1.29 4.82 16 8 C -0.22 -7.39 6.45 24.13 0.16 -7.23 16 9 C 0.37 15.16 7.75 87.19 0.68 15.84 16 10 O -0.52 -19.86 8.73 -86.14 -0.75 -20.61 16 11 N -0.53 -25.88 9.91 -438.99 -4.35 -30.23 16 12 C 0.20 10.94 2.90 44.24 0.13 11.07 16 13 H 0.00 0.01 6.74 -2.39 -0.02 0.00 16 14 C -0.11 -5.98 9.29 71.98 0.67 -5.31 16 15 C -0.53 -30.90 8.84 25.60 0.23 -30.67 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 17 C 0.02 0.99 5.30 84.66 0.45 1.44 16 18 N -0.91 -53.31 11.32 21.45 0.24 -53.07 16 19 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 1.01 7.49 -2.38 -0.02 0.99 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 2.62 4.68 -2.39 -0.01 2.61 16 27 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.07 1.17 8.01 -2.38 -0.02 1.15 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.17 2.49 7.66 -2.91 -0.02 2.47 16 31 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.41 12.70 9.06 -74.05 -0.67 12.03 16 33 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 4.15 6.07 -2.39 -0.01 4.13 16 35 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -67.49 312.96 0.69 -66.81 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.42 Total: 14.76 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.40 Total: -28.84 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -4.11 Total: -83.30 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.75 Total: -20.61 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.29 Total: 4.82 kcal Total: -67.49 0.69 -66.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.457 kcal (2) G-P(sol) polarization free energy of solvation -67.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds