Wall clock time and date at job start Mon Mar 30 2020 00:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.50693 * 109.47109 * 120.00687 * 2 1 3 5 5 C 1.37704 * 123.34820 * 305.36065 * 4 2 1 6 6 C 1.33651 * 115.07216 * 180.02562 * 5 4 2 7 7 S 1.70614 * 110.95079 * 359.76191 * 6 5 4 8 8 C 1.36387 * 123.35213 * 125.40710 * 4 2 1 9 9 C 1.46992 * 125.44326 * 359.92149 * 8 4 2 10 10 O 1.35335 * 119.99860 * 174.27480 * 9 8 4 11 11 N 1.30430 * 120.00508 * 354.27760 * 9 8 4 12 12 C 1.46501 * 120.00171 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47216 * 0.02562 * 12 11 9 14 14 C 1.53002 * 109.46957 * 119.99621 * 12 11 9 15 15 C 1.50698 * 109.47212 * 239.99652 * 12 11 9 16 16 H 1.08009 * 119.99910 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00145 * 180.27685 * 15 12 11 18 18 N 1.31508 * 120.00064 * 359.72375 * 17 15 12 19 19 Si 1.86800 * 119.99736 * 179.72602 * 17 15 12 20 20 H 1.48490 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47012 * 120.00121 * 19 17 15 22 22 H 1.48510 * 109.46957 * 239.99489 * 19 17 15 23 23 H 1.08994 * 109.47147 * 299.99661 * 1 2 3 24 24 H 1.09003 * 109.47192 * 59.99906 * 1 2 3 25 25 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46668 * 240.00549 * 2 1 3 27 27 H 1.08996 * 109.47130 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47765 * 300.00439 * 3 2 1 29 29 H 1.09001 * 109.46574 * 60.00770 * 3 2 1 30 30 H 1.08000 * 122.46911 * 0.02562 * 5 4 2 31 31 H 1.08004 * 124.52049 * 179.97438 * 6 5 4 32 32 H 0.96704 * 114.00093 * 5.02666 * 10 9 8 33 33 H 1.09003 * 109.46949 * 60.00268 * 14 12 11 34 34 H 1.08999 * 109.47368 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47488 * 299.99937 * 14 12 11 36 36 H 0.97001 * 120.00281 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 1.6570 -0.3661 2.5097 6 6 2.2033 -1.1066 3.4789 7 16 3.2316 -2.3020 2.8273 8 6 2.9046 -1.7581 1.1876 9 6 3.4747 -2.3434 -0.0343 10 8 4.4205 -3.3073 0.0546 11 7 3.0691 -1.9338 -1.2043 12 6 3.6377 -2.5167 -2.4222 13 1 4.3777 -3.2704 -2.1530 14 6 2.5236 -3.1676 -3.2443 15 6 4.2964 -1.4338 -3.2373 16 1 4.2923 -0.4134 -2.8833 17 6 4.8998 -1.7448 -4.4374 18 7 4.9053 -2.9873 -4.8681 19 14 5.7096 -0.4011 -5.4513 20 1 5.5666 0.9010 -4.7521 21 1 7.1507 -0.7137 -5.6266 22 1 5.0548 -0.3225 -6.7820 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9564 -0.8898 29 1 1.6767 1.9562 0.8901 30 1 0.9717 0.4430 2.7148 31 1 2.0158 -0.9691 4.5336 32 1 4.6011 -3.5989 0.9588 33 1 1.7832 -2.4143 -3.5135 34 1 2.9465 -3.6010 -4.1506 35 1 2.0471 -3.9509 -2.6548 36 1 5.3302 -3.2062 -5.7122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330387512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:28 Heat of formation + Delta-G solvation = -2.046315 kcal Electronic energy + Delta-G solvation = -18442.161302 eV Core-core repulsion = 15632.288664 eV Total energy + Delta-G solvation = -2809.872638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.08051 -37.71018 -34.67531 -33.71423 -32.28024 -30.17067 -28.00760 -26.75017 -25.09616 -24.51095 -21.82465 -21.47081 -19.58659 -18.98829 -17.25069 -16.16845 -16.07716 -15.32011 -14.60958 -14.21148 -14.14913 -13.78418 -13.28250 -13.15578 -12.81430 -12.54835 -12.27384 -12.07827 -11.79720 -11.49735 -11.30823 -11.12160 -10.90478 -10.75331 -10.71539 -10.54926 -10.38583 -10.19079 -10.02908 -9.44895 -9.01369 -8.56703 -8.32117 -7.98041 -7.67082 -5.98858 -4.03805 0.80394 1.55070 1.97714 2.62115 3.31442 3.38401 3.43336 3.57893 4.27413 4.46344 4.91307 4.98838 5.29158 5.33943 5.35741 5.59740 5.64058 5.87220 5.95221 6.00212 6.11136 6.17209 6.26401 6.35453 6.60278 6.62781 6.67268 6.86450 7.08975 7.22823 7.32981 7.63763 7.83717 8.04556 8.14334 8.40758 8.81419 9.07081 9.60436 11.07704 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.006051 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.463036 B = 4626.488430 C = 5175.372166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.133 4.133 4 C -0.032 4.032 5 C -0.129 4.129 6 C -0.245 4.245 7 S 0.152 5.848 8 C -0.188 4.188 9 C 0.351 3.649 10 O -0.500 6.500 11 N -0.471 5.471 12 C 0.194 3.806 13 H 0.028 0.972 14 C -0.124 4.124 15 C -0.497 4.497 16 H 0.061 0.939 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.150 0.850 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.376 0.624 33 H 0.034 0.966 34 H 0.090 0.910 35 H 0.005 0.995 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 3.131 15.673 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.047 4.047 5 C -0.161 4.161 6 C -0.382 4.382 7 S 0.419 5.581 8 C -0.306 4.306 9 C 0.123 3.877 10 O -0.293 6.293 11 N -0.204 5.204 12 C 0.087 3.913 13 H 0.046 0.954 14 C -0.183 4.183 15 C -0.536 4.536 16 H 0.079 0.921 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.209 1.209 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.167 0.833 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.157 0.843 31 H 0.181 0.819 32 H 0.226 0.774 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.025 0.975 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.454 2.376 15.091 16.222 hybrid contribution 0.150 1.161 -0.237 1.195 sum -5.304 3.538 14.854 16.165 Atomic orbital electron populations 1.21740 0.95181 1.01369 1.00829 1.20692 0.94982 0.95926 0.98242 1.21707 1.01242 0.95387 1.00692 1.19424 0.95161 0.94354 0.95765 1.19891 1.02834 1.02054 0.91340 1.24880 1.06155 1.03159 1.03999 1.82685 1.45361 1.33212 0.96805 1.23401 1.08047 1.04486 0.94709 1.20925 0.87768 0.87718 0.91327 1.85214 1.56798 1.54331 1.32973 1.72484 1.24718 1.24992 0.98204 1.19328 0.92773 0.94868 0.84354 0.95428 1.21731 0.97516 0.97520 1.01486 1.21056 1.34156 0.94249 1.04146 0.92073 1.24920 0.96187 0.95648 0.97435 1.69903 1.44546 1.17308 1.21401 0.86422 0.78943 0.81996 0.79967 1.19716 1.21057 1.20921 0.93785 0.92486 0.92968 0.83325 0.92802 0.92442 0.93906 0.84331 0.81939 0.77387 0.94717 0.89182 0.97545 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.99 37.16 0.33 -1.51 16 2 C -0.08 -1.27 3.06 -91.78 -0.28 -1.55 16 3 C -0.13 -1.97 9.09 37.16 0.34 -1.63 16 4 C -0.03 -0.50 4.72 -105.49 -0.50 -1.00 16 5 C -0.13 -1.62 9.19 -41.38 -0.38 -2.00 16 6 C -0.24 -2.70 10.92 29.12 0.32 -2.38 16 7 S 0.15 1.81 21.95 -107.50 -2.36 -0.55 16 8 C -0.19 -3.10 6.45 -36.70 -0.24 -3.34 16 9 C 0.35 7.17 7.94 -14.60 -0.12 7.05 16 10 O -0.50 -9.85 12.01 -17.70 -0.21 -10.06 16 11 N -0.47 -11.10 6.78 -54.09 -0.37 -11.47 16 12 C 0.19 5.27 2.91 -69.08 -0.20 5.07 16 13 H 0.03 0.83 6.73 -51.93 -0.35 0.48 16 14 C -0.12 -3.22 9.29 37.16 0.35 -2.87 16 15 C -0.50 -14.37 8.84 -34.44 -0.30 -14.68 16 16 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -26.13 11.31 55.43 0.63 -25.51 16 19 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H 0.04 0.51 7.50 -51.93 -0.39 0.13 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.15 3.00 4.65 -51.92 -0.24 2.76 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.54 8.00 -51.93 -0.42 0.12 16 30 H 0.14 1.47 7.67 -52.49 -0.40 1.07 16 31 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.38 5.27 7.78 45.56 0.35 5.62 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 2.50 6.06 -51.93 -0.31 2.18 16 35 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -31.47 311.03 -7.69 -39.16 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.26 Total: 4.10 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -0.78 Total: -17.26 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.26 Total: -36.97 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.21 Total: -10.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.36 Total: -0.55 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.47 -7.69 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.114 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds