Wall clock time and date at job start Mon Mar 30 2020 00:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.50693 * 109.47109 * 120.00687 * 2 1 3 5 5 C 1.37704 * 123.34820 * 305.36065 * 4 2 1 6 6 C 1.33651 * 115.07216 * 180.02562 * 5 4 2 7 7 S 1.70614 * 110.95079 * 359.76191 * 6 5 4 8 8 C 1.36387 * 123.35213 * 125.40710 * 4 2 1 9 9 C 1.46992 * 125.44326 * 359.92149 * 8 4 2 10 10 O 1.35335 * 119.99860 * 174.27480 * 9 8 4 11 11 N 1.30430 * 120.00508 * 354.27760 * 9 8 4 12 12 C 1.46501 * 120.00171 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47216 * 0.02562 * 12 11 9 14 14 C 1.53002 * 109.46957 * 119.99621 * 12 11 9 15 15 C 1.50698 * 109.47212 * 239.99652 * 12 11 9 16 16 H 1.08009 * 119.99910 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00145 * 180.27685 * 15 12 11 18 18 N 1.31508 * 120.00064 * 359.72375 * 17 15 12 19 19 Si 1.86800 * 119.99736 * 179.72602 * 17 15 12 20 20 H 1.48490 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47012 * 120.00121 * 19 17 15 22 22 H 1.48510 * 109.46957 * 239.99489 * 19 17 15 23 23 H 1.08994 * 109.47147 * 299.99661 * 1 2 3 24 24 H 1.09003 * 109.47192 * 59.99906 * 1 2 3 25 25 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46668 * 240.00549 * 2 1 3 27 27 H 1.08996 * 109.47130 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47765 * 300.00439 * 3 2 1 29 29 H 1.09001 * 109.46574 * 60.00770 * 3 2 1 30 30 H 1.08000 * 122.46911 * 0.02562 * 5 4 2 31 31 H 1.08004 * 124.52049 * 179.97438 * 6 5 4 32 32 H 0.96704 * 114.00093 * 5.02666 * 10 9 8 33 33 H 1.09003 * 109.46949 * 60.00268 * 14 12 11 34 34 H 1.08999 * 109.47368 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47488 * 299.99937 * 14 12 11 36 36 H 0.97001 * 120.00281 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 1.6570 -0.3661 2.5097 6 6 2.2033 -1.1066 3.4789 7 16 3.2316 -2.3020 2.8273 8 6 2.9046 -1.7581 1.1876 9 6 3.4747 -2.3434 -0.0343 10 8 4.4205 -3.3073 0.0546 11 7 3.0691 -1.9338 -1.2043 12 6 3.6377 -2.5167 -2.4222 13 1 4.3777 -3.2704 -2.1530 14 6 2.5236 -3.1676 -3.2443 15 6 4.2964 -1.4338 -3.2373 16 1 4.2923 -0.4134 -2.8833 17 6 4.8998 -1.7448 -4.4374 18 7 4.9053 -2.9873 -4.8681 19 14 5.7096 -0.4011 -5.4513 20 1 5.5666 0.9010 -4.7521 21 1 7.1507 -0.7137 -5.6266 22 1 5.0548 -0.3225 -6.7820 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9564 -0.8898 29 1 1.6767 1.9562 0.8901 30 1 0.9717 0.4430 2.7148 31 1 2.0158 -0.9691 4.5336 32 1 4.6011 -3.5989 0.9588 33 1 1.7832 -2.4143 -3.5135 34 1 2.9465 -3.6010 -4.1506 35 1 2.0471 -3.9509 -2.6548 36 1 5.3302 -3.2062 -5.7122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330387512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:27 Heat of formation + Delta-G solvation = -23.841956 kcal Electronic energy + Delta-G solvation = -18443.106432 eV Core-core repulsion = 15632.288664 eV Total energy + Delta-G solvation = -2810.817768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39608 -39.10531 -36.60869 -34.86997 -34.18348 -31.80699 -29.55012 -27.88746 -27.28906 -25.72989 -23.35401 -22.71613 -21.31911 -20.37406 -18.50644 -18.18744 -17.29636 -17.08427 -16.15313 -15.77548 -15.66330 -15.02124 -14.76144 -14.36756 -14.30673 -14.06747 -13.51024 -13.34067 -13.23728 -13.13127 -12.87862 -12.86738 -12.63810 -12.41585 -12.28089 -12.14586 -11.93036 -11.77156 -11.51801 -11.29276 -10.68393 -10.48775 -9.78386 -9.28800 -9.18041 -8.15570 -6.29798 -0.31388 0.49231 0.99734 1.37178 1.37899 1.46810 1.52717 2.12587 2.40894 2.85065 3.12607 3.51611 4.02075 4.15931 4.36942 4.42768 4.46307 4.62920 4.75333 4.86673 4.88062 4.88687 5.01716 5.05004 5.11735 5.15199 5.28324 5.42650 5.46643 5.50820 5.53686 5.67920 5.92093 6.03271 6.22074 6.67335 6.83833 7.15313 7.42572 8.90173 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.006051 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.463036 B = 4626.488430 C = 5175.372166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.023 4.023 5 C -0.148 4.148 6 C -0.216 4.216 7 S 0.211 5.789 8 C -0.250 4.250 9 C 0.366 3.634 10 O -0.519 6.519 11 N -0.508 5.508 12 C 0.200 3.800 13 H -0.012 1.012 14 C -0.111 4.111 15 C -0.519 4.519 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.966 3.034 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.272 1.272 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.205 0.795 32 H 0.398 0.602 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.016 0.984 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 4.476 18.556 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.109 4.109 3 C -0.184 4.184 4 C -0.039 4.039 5 C -0.179 4.179 6 C -0.353 4.353 7 S 0.479 5.521 8 C -0.367 4.367 9 C 0.139 3.861 10 O -0.316 6.316 11 N -0.242 5.242 12 C 0.091 3.909 13 H 0.005 0.995 14 C -0.169 4.169 15 C -0.558 4.558 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.198 1.198 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.126 0.874 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.182 0.818 31 H 0.222 0.778 32 H 0.252 0.748 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.035 0.965 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.126 3.703 18.004 19.375 hybrid contribution 0.362 0.697 -0.870 1.172 sum -5.765 4.400 17.134 18.606 Atomic orbital electron populations 1.21672 0.93300 1.01122 1.02259 1.20615 0.96640 0.96321 0.97347 1.21647 0.99703 0.94928 1.02115 1.19637 0.94006 0.93430 0.96853 1.19999 1.04314 1.03675 0.89894 1.25484 1.03263 1.00851 1.05741 1.82498 1.44482 1.32459 0.92685 1.23338 1.10818 1.06855 0.95738 1.21521 0.86147 0.86222 0.92221 1.85164 1.56706 1.54335 1.35372 1.72601 1.26791 1.26844 0.97938 1.18998 0.91960 0.93493 0.86402 0.99456 1.21531 0.97216 0.97541 1.00609 1.21277 1.35211 0.94156 1.05147 0.93408 1.25764 0.96525 0.98010 0.98372 1.70023 1.44942 1.19031 1.21830 0.85392 0.78104 0.79016 0.78436 1.19493 1.20237 1.19757 0.90890 0.92474 0.94028 0.87423 0.95081 0.92539 0.90903 0.81782 0.77848 0.74821 0.94841 0.91389 0.96457 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.99 71.98 0.65 -2.69 16 2 C -0.09 -2.87 3.06 -11.54 -0.04 -2.91 16 3 C -0.13 -3.67 9.09 71.98 0.65 -3.02 16 4 C -0.02 -0.68 4.72 -20.43 -0.10 -0.78 16 5 C -0.15 -3.12 9.19 21.10 0.19 -2.92 16 6 C -0.22 -3.66 10.92 66.78 0.73 -2.93 16 7 S 0.21 4.33 21.95 -56.49 -1.24 3.09 16 8 C -0.25 -8.05 6.45 24.13 0.16 -7.90 16 9 C 0.37 15.48 7.94 87.20 0.69 16.17 16 10 O -0.52 -21.19 12.01 -86.24 -1.04 -22.23 16 11 N -0.51 -25.30 6.78 -438.99 -2.98 -28.27 16 12 C 0.20 11.50 2.91 44.25 0.13 11.63 16 13 H -0.01 -0.79 6.73 -2.39 -0.02 -0.80 16 14 C -0.11 -6.05 9.29 71.98 0.67 -5.39 16 15 C -0.52 -31.51 8.84 25.60 0.23 -31.28 16 16 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 17 C 0.01 0.70 5.30 84.66 0.45 1.15 16 18 N -0.92 -55.62 11.31 21.45 0.24 -55.38 16 19 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H 0.07 1.48 7.50 -2.39 -0.02 1.46 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 4.56 4.65 -2.38 -0.01 4.55 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.64 8.00 -2.39 -0.02 1.62 16 30 H 0.16 2.61 7.67 -2.91 -0.02 2.59 16 31 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.40 11.19 7.78 -74.05 -0.58 10.62 16 33 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 3.97 6.06 -2.39 -0.01 3.96 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -72.63 311.03 1.94 -70.69 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.51 Total: 14.95 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.41 Total: -30.85 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -2.73 Total: -83.65 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.04 Total: -22.23 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.24 Total: 3.09 kcal Total: -72.63 1.94 -70.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.849 kcal (2) G-P(sol) polarization free energy of solvation -72.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds