Wall clock time and date at job start Mon Mar 30 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42103 * 109.47287 * 2 1 4 4 C 1.76202 * 103.00197 * 250.94447 * 2 1 3 5 5 C 1.38235 * 120.00249 * 89.99703 * 4 2 1 6 6 C 1.38234 * 120.00220 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46901 * 109.47201 * 89.99355 * 8 7 6 10 10 C 1.46900 * 110.99924 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46977 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47119 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99941 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00321 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99880 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47188 * 59.99526 * 16 14 12 18 18 H 1.48495 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46617 * 299.99690 * 16 14 12 20 20 C 1.38238 * 119.99742 * 359.52139 * 7 6 5 21 21 C 1.38233 * 120.00121 * 0.41161 * 20 7 6 22 22 H 1.08997 * 109.47616 * 169.05251 * 1 2 3 23 23 H 1.09000 * 109.47499 * 289.05607 * 1 2 3 24 24 H 1.09008 * 109.47248 * 49.05865 * 1 2 3 25 25 H 1.07999 * 119.99770 * 359.97438 * 5 4 2 26 26 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 28 28 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 29 29 H 1.00894 * 111.00648 * 303.95689 * 9 8 7 30 30 H 1.08993 * 109.47637 * 300.00269 * 10 9 8 31 31 H 1.09001 * 109.46926 * 60.00690 * 10 9 8 32 32 H 1.08998 * 109.47157 * 300.00094 * 11 10 9 33 33 H 1.08993 * 109.46976 * 60.00569 * 11 10 9 34 34 H 0.97000 * 120.00480 * 180.02562 * 15 14 12 35 35 H 1.08004 * 120.00362 * 180.23482 * 20 7 6 36 36 H 1.08002 * 120.00315 * 179.82598 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3658 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8276 -1.4404 -4.1701 8 6 3.1611 -1.9202 -5.5591 9 7 4.6201 -1.9790 -5.7198 10 6 4.9832 -2.4444 -7.0649 11 6 6.5070 -2.4917 -7.1941 12 6 6.8796 -2.9686 -8.5743 13 1 6.1069 -3.2130 -9.2880 14 6 8.2070 -3.0928 -8.9258 15 7 9.1481 -2.7947 -8.0568 16 14 8.6688 -3.6832 -10.6369 17 1 8.1156 -2.7483 -11.6492 18 1 10.1478 -3.7293 -10.7622 19 1 8.1102 -5.0410 -10.8594 20 6 2.6760 -2.3518 -3.1418 21 6 2.3659 -1.9120 -1.8685 22 1 -0.3634 -1.0089 -0.1952 23 1 -0.3634 0.3355 0.9713 24 1 -0.3634 0.6735 -0.7763 25 1 2.2439 1.4069 -2.4584 26 1 2.7992 0.6237 -4.7258 27 1 2.7384 -2.9133 -5.7117 28 1 2.7424 -1.2305 -6.2920 29 1 5.0422 -1.0846 -5.5200 30 1 4.5733 -3.4411 -7.2276 31 1 4.5771 -1.7587 -7.8086 32 1 6.9166 -1.4948 -7.0317 33 1 6.9135 -3.1771 -6.4505 34 1 10.0820 -2.8818 -8.3041 35 1 2.7971 -3.4077 -3.3337 36 1 2.2447 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336701254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:57 Heat of formation + Delta-G solvation = -22.888023 kcal Electronic energy + Delta-G solvation = -16909.636238 eV Core-core repulsion = 14098.859836 eV Total energy + Delta-G solvation = -2810.776402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37955 -36.04878 -35.89204 -33.21951 -31.66324 -31.04605 -29.22818 -28.86713 -25.58996 -23.46882 -22.84852 -21.32608 -20.55493 -18.29665 -16.82747 -16.33081 -15.89076 -15.46961 -15.06614 -14.81690 -14.44258 -14.20630 -14.01831 -13.91886 -13.49366 -13.15993 -12.73392 -12.62334 -12.42231 -12.10832 -11.99887 -11.47496 -11.21326 -11.01222 -10.92906 -10.58891 -10.40430 -10.03194 -9.50593 -9.25588 -9.06777 -9.01948 -8.58821 -8.36677 -7.90423 -6.00887 -4.04082 0.76700 1.31565 1.68055 2.47183 3.32454 3.36937 3.39017 3.49106 3.74141 4.42819 4.69403 4.72050 4.85879 4.88831 4.94764 5.02407 5.30069 5.32023 5.34823 5.59585 5.63906 5.64190 5.83895 5.96546 6.14788 6.18027 6.28043 6.32640 6.55741 6.85405 6.92683 7.38898 7.68907 7.76694 7.89251 8.05331 8.40756 9.02879 9.59742 11.10475 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052021 B = 0.002752 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.117801 B =10172.828539 C =10345.212127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.332 4.668 3 O -0.860 6.860 4 C -0.467 4.467 5 C -0.054 4.054 6 C -0.131 4.131 7 C -0.035 4.035 8 C 0.089 3.911 9 N -0.685 5.685 10 C 0.065 3.935 11 C 0.026 3.974 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.116 4.116 21 C -0.046 4.046 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.338 0.662 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.131 0.869 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.316 1.206 17.224 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.529 4.471 3 O -0.856 6.856 4 C -0.565 4.565 5 C -0.073 4.073 6 C -0.151 4.151 7 C -0.035 4.035 8 C -0.041 4.041 9 N -0.316 5.316 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.135 4.135 21 C -0.065 4.065 22 H 0.129 0.871 23 H 0.122 0.878 24 H 0.099 0.901 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.464 0.862 18.242 25.268 hybrid contribution -0.725 1.775 -3.347 3.858 sum -18.189 2.637 14.894 23.656 Atomic orbital electron populations 1.27783 1.22891 1.07839 1.07060 1.69410 0.85704 0.99490 0.92480 1.93106 1.73074 1.37294 1.82101 1.27505 1.13379 0.99770 1.15804 1.21025 0.94765 0.99209 0.92324 1.21180 1.01284 0.95486 0.97141 1.20173 0.94049 0.93201 0.96115 1.20998 0.91093 1.00741 0.91221 1.60654 1.05846 1.34092 1.30997 1.22207 1.00562 0.98277 0.85201 1.19063 0.87663 0.97500 0.96949 1.21126 0.91831 1.44962 0.98340 0.92795 1.25008 0.96603 0.95487 0.97249 1.69962 1.00059 1.48539 1.34621 0.86633 0.77272 0.79336 0.84602 1.20303 1.21234 1.20188 1.21195 0.99745 1.00105 0.92489 1.20821 0.95311 0.93401 0.97013 0.87127 0.87822 0.90147 0.85877 0.86022 0.90155 0.94746 0.84433 0.92151 0.96552 0.96814 0.95567 0.92876 0.85088 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.03 10.70 101.05 1.08 -1.95 16 2 S 1.33 9.92 14.19 -107.50 -1.53 8.40 16 3 O -0.86 -12.36 16.90 -35.23 -0.60 -12.96 16 4 C -0.47 -4.84 5.61 -39.58 -0.22 -5.06 16 5 C -0.05 -0.70 9.44 -39.58 -0.37 -1.07 16 6 C -0.13 -1.72 9.70 -39.58 -0.38 -2.10 16 7 C -0.03 -0.46 5.39 -104.63 -0.56 -1.02 16 8 C 0.09 1.27 5.81 -4.98 -0.03 1.24 16 9 N -0.68 -12.28 6.49 -115.06 -0.75 -13.03 16 10 C 0.07 1.37 5.62 -3.82 -0.02 1.35 16 11 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 12 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 21 C -0.05 -0.42 9.75 -39.58 -0.39 -0.80 16 22 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 25 H 0.12 1.65 7.45 -52.49 -0.39 1.26 16 26 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 27 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 28 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.34 6.06 8.72 -39.29 -0.34 5.72 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -36.62 322.83 -9.47 -46.09 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.34 Total: 0.55 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -1.84 Total: -24.25 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.01 Total: -39.39 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.60 Total: -12.96 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 9.92 SS G_CDS: -1.53 Total: 8.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.62 -9.47 -46.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.200 kcal (2) G-P(sol) polarization free energy of solvation -36.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds