Wall clock time and date at job start Mon Mar 30 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42103 * 109.47287 * 2 1 4 4 C 1.76202 * 103.00197 * 250.94447 * 2 1 3 5 5 C 1.38235 * 120.00249 * 89.99703 * 4 2 1 6 6 C 1.38234 * 120.00220 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46901 * 109.47201 * 89.99355 * 8 7 6 10 10 C 1.46900 * 110.99924 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46977 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47119 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99941 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00321 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99880 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47188 * 59.99526 * 16 14 12 18 18 H 1.48495 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46617 * 299.99690 * 16 14 12 20 20 C 1.38238 * 119.99742 * 359.52139 * 7 6 5 21 21 C 1.38233 * 120.00121 * 0.41161 * 20 7 6 22 22 H 1.08997 * 109.47616 * 169.05251 * 1 2 3 23 23 H 1.09000 * 109.47499 * 289.05607 * 1 2 3 24 24 H 1.09008 * 109.47248 * 49.05865 * 1 2 3 25 25 H 1.07999 * 119.99770 * 359.97438 * 5 4 2 26 26 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 28 28 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 29 29 H 1.00894 * 111.00648 * 303.95689 * 9 8 7 30 30 H 1.08993 * 109.47637 * 300.00269 * 10 9 8 31 31 H 1.09001 * 109.46926 * 60.00690 * 10 9 8 32 32 H 1.08998 * 109.47157 * 300.00094 * 11 10 9 33 33 H 1.08993 * 109.46976 * 60.00569 * 11 10 9 34 34 H 0.97000 * 120.00480 * 180.02562 * 15 14 12 35 35 H 1.08004 * 120.00362 * 180.23482 * 20 7 6 36 36 H 1.08002 * 120.00315 * 179.82598 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3658 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8276 -1.4404 -4.1701 8 6 3.1611 -1.9202 -5.5591 9 7 4.6201 -1.9790 -5.7198 10 6 4.9832 -2.4444 -7.0649 11 6 6.5070 -2.4917 -7.1941 12 6 6.8796 -2.9686 -8.5743 13 1 6.1069 -3.2130 -9.2880 14 6 8.2070 -3.0928 -8.9258 15 7 9.1481 -2.7947 -8.0568 16 14 8.6688 -3.6832 -10.6369 17 1 8.1156 -2.7483 -11.6492 18 1 10.1478 -3.7293 -10.7622 19 1 8.1102 -5.0410 -10.8594 20 6 2.6760 -2.3518 -3.1418 21 6 2.3659 -1.9120 -1.8685 22 1 -0.3634 -1.0089 -0.1952 23 1 -0.3634 0.3355 0.9713 24 1 -0.3634 0.6735 -0.7763 25 1 2.2439 1.4069 -2.4584 26 1 2.7992 0.6237 -4.7258 27 1 2.7384 -2.9133 -5.7117 28 1 2.7424 -1.2305 -6.2920 29 1 5.0422 -1.0846 -5.5200 30 1 4.5733 -3.4411 -7.2276 31 1 4.5771 -1.7587 -7.8086 32 1 6.9166 -1.4948 -7.0317 33 1 6.9135 -3.1771 -6.4505 34 1 10.0820 -2.8818 -8.3041 35 1 2.7971 -3.4077 -3.3337 36 1 2.2447 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336701254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:56 Heat of formation + Delta-G solvation = -49.691139 kcal Electronic energy + Delta-G solvation = -16910.798509 eV Core-core repulsion = 14098.859836 eV Total energy + Delta-G solvation = -2811.938673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30492 -37.48757 -36.86634 -35.16738 -33.08376 -31.92261 -30.71204 -29.59639 -27.12862 -25.14312 -23.74104 -22.54429 -22.21593 -19.06690 -18.52887 -17.65847 -17.07314 -16.59372 -16.29163 -15.95300 -15.81551 -15.55001 -15.16808 -14.62396 -14.42110 -14.36349 -14.21881 -13.73941 -13.58179 -13.40108 -13.13519 -12.84324 -12.78630 -12.55630 -12.36761 -12.08535 -11.91030 -11.46544 -11.35101 -11.23495 -10.57788 -10.10257 -9.90881 -9.41085 -9.28926 -8.21617 -6.33862 -0.08426 0.42024 0.98992 1.39766 1.43186 1.51235 1.81204 2.39363 2.61677 3.01202 3.11691 3.44788 3.80592 3.82941 4.05116 4.26325 4.34509 4.45613 4.46908 4.51905 4.57467 4.63525 4.72387 4.87940 5.02817 5.08043 5.18850 5.26435 5.28871 5.41457 5.61493 5.63593 5.74755 5.98493 6.07922 6.20800 6.40278 6.83297 7.35680 8.90442 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052021 B = 0.002752 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.117801 B =10172.828539 C =10345.212127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.400 4.600 3 O -0.931 6.931 4 C -0.472 4.472 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.054 4.054 8 C 0.093 3.907 9 N -0.690 5.690 10 C 0.084 3.916 11 C 0.032 3.968 12 C -0.547 4.547 13 H 0.062 0.938 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.264 1.264 20 C -0.124 4.124 21 C -0.033 4.033 22 H 0.143 0.857 23 H 0.122 0.878 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.335 0.665 30 H 0.066 0.934 31 H 0.019 0.981 32 H -0.013 1.013 33 H -0.004 1.004 34 H 0.264 0.736 35 H 0.146 0.854 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.987 -0.652 17.828 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.598 4.402 3 O -0.927 6.927 4 C -0.568 4.568 5 C -0.100 4.100 6 C -0.166 4.166 7 C -0.054 4.054 8 C -0.035 4.035 9 N -0.321 5.321 10 C -0.045 4.045 11 C -0.006 4.006 12 C -0.585 4.585 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.143 4.143 21 C -0.051 4.051 22 H 0.161 0.839 23 H 0.140 0.860 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.135 0.865 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.152 0.848 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.005 0.995 33 H 0.014 0.986 34 H 0.073 0.927 35 H 0.164 0.836 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.139 -0.995 18.836 26.872 hybrid contribution -0.311 2.351 -3.401 4.146 sum -19.451 1.356 15.435 24.868 Atomic orbital electron populations 1.27749 1.20606 1.09520 1.07484 1.68535 0.85909 0.96321 0.89392 1.92982 1.75955 1.40940 1.82867 1.27936 1.12336 1.00259 1.16260 1.21057 0.96608 0.99103 0.93241 1.21206 1.02181 0.95796 0.97375 1.20109 0.95867 0.93448 0.96016 1.21003 0.88469 1.01566 0.92464 1.60571 1.08544 1.34067 1.28872 1.21825 0.96712 0.98890 0.87065 1.18916 0.91265 0.94927 0.95478 1.21587 0.92488 1.45025 0.99393 0.91939 1.26012 0.96546 0.95433 1.01864 1.70107 1.00507 1.49597 1.37032 0.85448 0.77012 0.79286 0.78975 1.19229 1.20837 1.18883 1.21541 0.99206 1.00581 0.92976 1.21415 0.92563 0.93569 0.97577 0.83865 0.85964 0.92211 0.87602 0.86499 0.89000 0.94485 0.84778 0.91537 0.96287 0.99473 0.98551 0.92695 0.83584 0.79153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.50 10.70 113.37 1.21 -3.28 16 2 S 1.40 18.18 14.19 -56.49 -0.80 17.38 16 3 O -0.93 -26.88 16.90 -148.98 -2.52 -29.40 16 4 C -0.47 -9.01 5.61 22.27 0.12 -8.88 16 5 C -0.08 -2.13 9.44 22.27 0.21 -1.92 16 6 C -0.15 -3.94 9.70 22.27 0.22 -3.72 16 7 C -0.05 -1.39 5.39 -19.87 -0.11 -1.49 16 8 C 0.09 2.63 5.81 85.55 0.50 3.13 16 9 N -0.69 -24.91 6.49 -517.94 -3.36 -28.27 16 10 C 0.08 3.53 5.62 86.30 0.49 4.01 16 11 C 0.03 1.71 5.23 29.85 0.16 1.87 16 12 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 16 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 C -0.12 -2.52 9.70 22.27 0.22 -2.31 16 21 C -0.03 -0.48 9.75 22.27 0.22 -0.26 16 22 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.11 3.07 7.45 -2.91 -0.02 3.05 16 26 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 27 H 0.09 2.36 8.09 -2.39 -0.02 2.34 16 28 H 0.04 1.02 8.09 -2.39 -0.02 1.00 16 29 H 0.34 12.40 8.72 -89.70 -0.78 11.62 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -82.09 322.83 -0.17 -82.26 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.28 Total: 12.62 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 3.92 Total: -43.66 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.08 Total: -85.65 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -2.52 Total: -29.40 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 18.18 SS G_CDS: -0.80 Total: 17.38 kcal Total: -82.09 -0.17 -82.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.565 kcal (2) G-P(sol) polarization free energy of solvation -82.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds