Wall clock time and date at job start Mon Mar 30 2020 01:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36235 * 116.99590 * 2 1 4 4 C 1.38663 * 122.59071 * 0.02931 * 3 2 1 5 5 C 1.33432 * 114.88856 * 179.97438 * 4 3 2 6 6 S 1.75865 * 109.65621 * 0.02562 * 5 4 3 7 7 C 1.33638 * 122.58252 * 179.73130 * 3 2 1 8 8 C 1.50694 * 125.19437 * 359.97438 * 7 3 2 9 9 N 1.46899 * 109.47537 * 89.99956 * 8 7 3 10 10 C 1.46895 * 111.00280 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47065 * 185.34799 * 10 9 8 12 12 C 1.50696 * 115.55112 * 65.05114 * 11 10 9 13 13 H 1.08002 * 120.00041 * 265.44472 * 12 11 10 14 14 C 1.37880 * 120.00196 * 85.44154 * 12 11 10 15 15 N 1.31512 * 119.99670 * 353.60202 * 14 12 11 16 16 Si 1.86799 * 120.00067 * 173.59596 * 14 12 11 17 17 H 1.48507 * 109.47202 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46917 * 120.00027 * 16 14 12 19 19 H 1.48496 * 109.47579 * 240.00510 * 16 14 12 20 20 C 1.53008 * 117.50051 * 279.37911 * 11 10 9 21 21 C 1.53001 * 117.49976 * 210.71999 * 11 10 9 22 22 H 1.08998 * 109.46727 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46843 * 59.99697 * 1 2 3 24 24 H 1.09000 * 109.47085 * 299.99685 * 1 2 3 25 25 H 1.07999 * 122.55319 * 359.95490 * 4 3 2 26 26 H 1.08000 * 125.16946 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46824 * 209.99724 * 8 7 3 28 28 H 1.09000 * 109.47536 * 329.99126 * 8 7 3 29 29 H 1.00902 * 110.99748 * 303.95056 * 9 8 7 30 30 H 1.08998 * 109.47533 * 305.35012 * 10 9 8 31 31 H 1.09000 * 109.46940 * 65.34630 * 10 9 8 32 32 H 0.97009 * 119.99635 * 179.97438 * 15 14 12 33 33 H 1.08994 * 117.49520 * 0.02562 * 20 11 10 34 34 H 1.08995 * 117.49880 * 145.02126 * 20 11 10 35 35 H 1.09001 * 117.50251 * 214.98337 * 21 11 10 36 36 H 1.09002 * 117.50061 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2139 0.0000 4 6 1.3455 2.4097 0.0006 5 6 2.1050 3.5068 0.0010 6 16 3.8034 3.0504 0.0000 7 6 3.3774 1.3440 0.0053 8 6 4.3617 0.2030 0.0124 9 7 4.6874 -0.1715 -1.3702 10 6 5.6472 -1.2831 -1.4025 11 6 6.0630 -1.5560 -2.8494 12 6 6.8279 -0.4478 -3.5259 13 1 6.3049 0.2785 -4.1304 14 6 8.1955 -0.3609 -3.3731 15 7 8.8163 -1.1660 -2.5389 16 14 9.1663 0.9001 -4.3512 17 1 8.2401 1.6786 -5.2123 18 1 9.8644 1.8201 -3.4175 19 1 10.1661 0.2048 -5.2009 20 6 5.1122 -2.3875 -3.7129 21 6 6.4281 -2.9948 -3.2201 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 0.2662 2.4501 0.0004 26 1 1.7333 4.5208 0.0011 27 1 5.2708 0.5105 0.5293 28 1 3.9231 -0.6521 0.5267 29 1 3.8527 -0.3989 -1.8895 30 1 6.5270 -1.0207 -0.8149 31 1 5.1833 -2.1758 -0.9832 32 1 9.7786 -1.1051 -2.4317 33 1 4.1903 -2.7397 -3.2503 34 1 5.0403 -2.1332 -4.7703 35 1 7.2213 -3.1399 -3.9535 36 1 6.3724 -3.7470 -2.4331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336712215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:32 Heat of formation + Delta-G solvation = 25.677761 kcal Electronic energy + Delta-G solvation = -17960.035496 eV Core-core repulsion = 15151.365064 eV Total energy + Delta-G solvation = -2808.670432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72150 -36.98071 -35.81590 -34.29476 -31.75641 -30.13737 -27.32514 -25.79657 -25.06907 -23.57278 -22.18650 -20.91865 -19.44809 -18.94223 -17.42502 -16.49882 -15.96340 -15.72073 -15.04942 -14.74158 -14.34268 -13.90582 -13.77520 -13.47304 -13.13816 -12.73978 -12.55657 -12.11046 -11.80787 -11.35366 -11.19250 -10.99534 -10.95870 -10.87584 -10.62167 -10.56804 -10.35927 -10.08805 -9.38894 -8.71111 -8.52226 -8.29158 -7.98263 -7.81613 -7.40804 -5.87907 -3.88559 1.10171 1.76063 2.08551 2.79235 3.38507 3.46342 3.51704 3.67582 4.54762 4.75196 4.97788 5.09784 5.11441 5.19406 5.38866 5.42430 5.55194 5.56742 5.78103 5.83741 6.01345 6.13015 6.27186 6.43607 6.50500 6.59889 6.73624 6.82766 6.96722 7.20044 7.37284 7.55624 7.67236 8.03757 8.05947 8.27551 8.65448 9.10787 9.74084 11.22211 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.005549 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.333164 B = 5044.877757 C = 5977.350987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.087 3.913 4 C -0.188 4.188 5 C -0.209 4.209 6 S 0.163 5.837 7 C -0.204 4.204 8 C 0.138 3.862 9 N -0.662 5.662 10 C 0.108 3.892 11 C 0.053 3.947 12 C -0.466 4.466 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.287 1.287 20 C -0.216 4.216 21 C -0.158 4.158 22 H 0.095 0.905 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.139 0.861 26 H 0.164 0.836 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.333 0.667 30 H 0.076 0.924 31 H -0.005 1.005 32 H 0.256 0.744 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.048 5.602 7.192 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.220 6.220 3 C 0.032 3.968 4 C -0.221 4.221 5 C -0.345 4.345 6 S 0.426 5.574 7 C -0.322 4.322 8 C 0.008 3.992 9 N -0.293 5.293 10 C -0.021 4.021 11 C 0.052 3.948 12 C -0.504 4.504 13 H 0.078 0.922 14 C -0.135 4.135 15 N -0.525 5.525 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.253 4.253 21 C -0.196 4.196 22 H 0.114 0.886 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.156 0.844 26 H 0.182 0.818 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.013 0.987 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.908 6.661 7.200 16.212 hybrid contribution -1.624 -0.712 -0.257 1.791 sum -14.531 5.949 6.943 17.168 Atomic orbital electron populations 1.22966 0.79079 1.03500 1.00811 1.86171 1.20519 1.25312 1.90028 1.17633 0.90999 0.84965 1.03224 1.20103 1.01106 0.91583 1.09344 1.25448 0.97597 1.02356 1.09134 1.84404 1.04097 0.97270 1.71620 1.23658 0.94923 0.98916 1.14726 1.20142 0.94837 0.91829 0.92436 1.60362 1.16458 1.42666 1.09772 1.21545 0.93940 0.88139 0.98429 1.18821 0.95364 0.90566 0.90063 1.20354 0.90832 1.10427 1.28766 0.92237 1.24933 0.97734 0.95712 0.95125 1.70026 1.08693 1.38493 1.35287 0.86621 0.80065 0.81629 0.80183 1.19786 1.21230 1.21326 1.22985 0.92793 1.09538 0.99990 1.22514 0.96517 0.98263 1.02336 0.88620 0.93032 0.93253 0.84357 0.81824 0.90560 0.94288 0.84985 0.90570 0.98719 0.93457 0.92193 0.90589 0.90103 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.92 101.05 1.00 1.31 16 2 O -0.31 -4.39 10.16 -20.49 -0.21 -4.60 16 3 C 0.09 1.29 6.59 -41.04 -0.27 1.02 16 4 C -0.19 -2.30 9.16 -41.11 -0.38 -2.67 16 5 C -0.21 -2.43 11.22 29.05 0.33 -2.11 16 6 S 0.16 2.30 23.32 -107.50 -2.51 -0.20 16 7 C -0.20 -3.31 6.03 -35.92 -0.22 -3.53 16 8 C 0.14 2.49 6.01 -4.98 -0.03 2.46 16 9 N -0.66 -13.84 6.36 -115.07 -0.73 -14.57 16 10 C 0.11 2.50 5.51 -3.83 -0.02 2.48 16 11 C 0.05 1.32 1.55 -155.66 -0.24 1.08 16 12 C -0.47 -13.00 8.74 -34.44 -0.30 -13.30 16 13 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 14 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 15 N -0.89 -25.63 12.92 55.43 0.72 -24.91 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 C -0.22 -4.86 9.96 -26.69 -0.27 -5.12 16 21 C -0.16 -3.83 9.41 -26.69 -0.25 -4.08 16 22 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.44 7.84 -51.93 -0.41 0.03 16 24 H 0.05 0.39 7.84 -51.93 -0.41 -0.01 16 25 H 0.14 1.31 6.91 -52.49 -0.36 0.95 16 26 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.04 0.69 7.96 -51.93 -0.41 0.28 16 29 H 0.33 6.83 8.78 -39.29 -0.34 6.48 16 30 H 0.08 1.95 8.13 -51.93 -0.42 1.52 16 31 H -0.01 -0.12 8.09 -51.93 -0.42 -0.54 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.08 2.08 8.14 -51.93 -0.42 1.65 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -30.20 321.72 -8.93 -39.13 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.28 Total: 4.19 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.74 Total: -20.69 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.02 Total: -39.49 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.21 Total: -4.60 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.51 Total: -0.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.20 -8.93 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336712215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.810 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds