Wall clock time and date at job start Mon Mar 30 2020 01:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36235 * 116.99590 * 2 1 4 4 C 1.38663 * 122.59071 * 0.02931 * 3 2 1 5 5 C 1.33432 * 114.88856 * 179.97438 * 4 3 2 6 6 S 1.75865 * 109.65621 * 0.02562 * 5 4 3 7 7 C 1.33638 * 122.58252 * 179.73130 * 3 2 1 8 8 C 1.50694 * 125.19437 * 359.97438 * 7 3 2 9 9 N 1.46899 * 109.47537 * 89.99956 * 8 7 3 10 10 C 1.46895 * 111.00280 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47065 * 185.34799 * 10 9 8 12 12 C 1.50696 * 115.55112 * 65.05114 * 11 10 9 13 13 H 1.08002 * 120.00041 * 265.44472 * 12 11 10 14 14 C 1.37880 * 120.00196 * 85.44154 * 12 11 10 15 15 N 1.31512 * 119.99670 * 353.60202 * 14 12 11 16 16 Si 1.86799 * 120.00067 * 173.59596 * 14 12 11 17 17 H 1.48507 * 109.47202 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46917 * 120.00027 * 16 14 12 19 19 H 1.48496 * 109.47579 * 240.00510 * 16 14 12 20 20 C 1.53008 * 117.50051 * 279.37911 * 11 10 9 21 21 C 1.53001 * 117.49976 * 210.71999 * 11 10 9 22 22 H 1.08998 * 109.46727 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46843 * 59.99697 * 1 2 3 24 24 H 1.09000 * 109.47085 * 299.99685 * 1 2 3 25 25 H 1.07999 * 122.55319 * 359.95490 * 4 3 2 26 26 H 1.08000 * 125.16946 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46824 * 209.99724 * 8 7 3 28 28 H 1.09000 * 109.47536 * 329.99126 * 8 7 3 29 29 H 1.00902 * 110.99748 * 303.95056 * 9 8 7 30 30 H 1.08998 * 109.47533 * 305.35012 * 10 9 8 31 31 H 1.09000 * 109.46940 * 65.34630 * 10 9 8 32 32 H 0.97009 * 119.99635 * 179.97438 * 15 14 12 33 33 H 1.08994 * 117.49520 * 0.02562 * 20 11 10 34 34 H 1.08995 * 117.49880 * 145.02126 * 20 11 10 35 35 H 1.09001 * 117.50251 * 214.98337 * 21 11 10 36 36 H 1.09002 * 117.50061 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2139 0.0000 4 6 1.3455 2.4097 0.0006 5 6 2.1050 3.5068 0.0010 6 16 3.8034 3.0504 0.0000 7 6 3.3774 1.3440 0.0053 8 6 4.3617 0.2030 0.0124 9 7 4.6874 -0.1715 -1.3702 10 6 5.6472 -1.2831 -1.4025 11 6 6.0630 -1.5560 -2.8494 12 6 6.8279 -0.4478 -3.5259 13 1 6.3049 0.2785 -4.1304 14 6 8.1955 -0.3609 -3.3731 15 7 8.8163 -1.1660 -2.5389 16 14 9.1663 0.9001 -4.3512 17 1 8.2401 1.6786 -5.2123 18 1 9.8644 1.8201 -3.4175 19 1 10.1661 0.2048 -5.2009 20 6 5.1122 -2.3875 -3.7129 21 6 6.4281 -2.9948 -3.2201 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 0.2662 2.4501 0.0004 26 1 1.7333 4.5208 0.0011 27 1 5.2708 0.5105 0.5293 28 1 3.9231 -0.6521 0.5267 29 1 3.8527 -0.3989 -1.8895 30 1 6.5270 -1.0207 -0.8149 31 1 5.1833 -2.1758 -0.9832 32 1 9.7786 -1.1051 -2.4317 33 1 4.1903 -2.7397 -3.2503 34 1 5.0403 -2.1332 -4.7703 35 1 7.2213 -3.1399 -3.9535 36 1 6.3724 -3.7470 -2.4331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336712215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:32 Heat of formation + Delta-G solvation = 6.812314 kcal Electronic energy + Delta-G solvation = -17960.853563 eV Core-core repulsion = 15151.365064 eV Total energy + Delta-G solvation = -2809.488499 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74916 -38.81543 -36.92124 -35.81182 -33.88658 -31.37941 -28.39621 -27.55600 -26.58486 -24.98692 -23.53383 -22.78448 -20.91757 -20.41760 -18.68075 -17.87830 -17.50584 -16.73479 -16.65204 -16.27070 -15.88378 -15.47814 -15.25427 -14.90600 -14.59755 -14.01019 -13.71037 -13.58988 -13.09583 -13.05400 -12.87137 -12.76842 -12.56153 -12.30132 -12.21679 -12.00976 -11.84347 -11.62630 -11.33382 -10.72839 -10.37310 -9.94976 -9.57202 -9.11136 -8.84726 -8.02369 -6.08368 0.07128 0.70807 1.08063 1.41916 1.44390 1.55422 1.76875 2.49157 2.74364 3.27356 3.36302 3.69700 3.85117 4.15112 4.26354 4.37953 4.41525 4.45872 4.55036 4.61493 4.69375 4.74000 4.78004 4.82084 4.89459 4.98948 5.02885 5.06760 5.27960 5.43890 5.64281 5.74802 5.88684 6.31412 6.43105 6.50258 6.70396 6.94739 7.56636 9.07154 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.005549 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.333164 B = 5044.877757 C = 5977.350987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.331 6.331 3 C 0.098 3.902 4 C -0.196 4.196 5 C -0.181 4.181 6 S 0.130 5.870 7 C -0.248 4.248 8 C 0.148 3.852 9 N -0.669 5.669 10 C 0.124 3.876 11 C 0.024 3.976 12 C -0.478 4.478 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.913 5.913 16 Si 0.944 3.056 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.188 4.188 21 C -0.163 4.163 22 H 0.111 0.889 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.172 0.828 26 H 0.201 0.799 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.335 0.665 30 H 0.043 0.957 31 H 0.005 0.995 32 H 0.256 0.744 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 6.674 7.091 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.246 6.246 3 C 0.041 3.959 4 C -0.228 4.228 5 C -0.317 4.317 6 S 0.393 5.607 7 C -0.366 4.366 8 C 0.017 3.983 9 N -0.300 5.300 10 C -0.005 4.005 11 C 0.024 3.976 12 C -0.516 4.516 13 H 0.064 0.936 14 C -0.177 4.177 15 N -0.552 5.552 16 Si 0.771 3.229 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.226 4.226 21 C -0.201 4.201 22 H 0.129 0.871 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.189 0.811 26 H 0.218 0.782 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.153 0.847 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.277 7.728 7.096 18.532 hybrid contribution -1.032 -1.039 -0.205 1.479 sum -16.309 6.688 6.891 18.926 Atomic orbital electron populations 1.23290 0.76562 1.05140 1.02226 1.86142 1.23226 1.25525 1.89687 1.17922 0.90767 0.86105 1.01118 1.20380 1.02717 0.90434 1.09250 1.25875 0.95371 1.04015 1.06432 1.84448 1.06981 0.96663 1.72642 1.23468 0.95341 0.99009 1.18750 1.19954 0.94960 0.92807 0.90537 1.60276 1.16295 1.41598 1.11842 1.21197 0.93396 0.89238 0.96712 1.18931 0.97014 0.90307 0.91389 1.20541 0.91390 1.10937 1.28711 0.93599 1.25580 0.98646 0.97491 0.96002 1.70124 1.08803 1.39901 1.36386 0.85719 0.78730 0.79544 0.78914 1.19477 1.21037 1.20774 1.22960 0.92887 1.07006 0.99708 1.22431 0.97123 0.98175 1.02374 0.87078 0.91865 0.91452 0.81067 0.78160 0.91918 0.94368 0.84708 0.93852 0.97690 0.93503 0.89572 0.90533 0.92262 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.92 113.37 1.12 1.49 16 2 O -0.33 -8.93 10.16 -96.24 -0.98 -9.90 16 3 C 0.10 2.73 6.59 21.33 0.14 2.87 16 4 C -0.20 -4.13 9.16 21.28 0.19 -3.94 16 5 C -0.18 -3.64 11.22 66.73 0.75 -2.89 16 6 S 0.13 3.60 23.32 -56.49 -1.32 2.28 16 7 C -0.25 -8.00 6.03 24.64 0.15 -7.85 16 8 C 0.15 5.46 6.01 85.56 0.51 5.97 16 9 N -0.67 -28.38 6.36 -517.96 -3.30 -31.68 16 10 C 0.12 5.83 5.51 86.30 0.48 6.31 16 11 C 0.02 1.23 1.55 -52.93 -0.08 1.15 16 12 C -0.48 -27.04 8.74 25.60 0.22 -26.82 16 13 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 14 C 0.02 1.22 5.39 84.66 0.46 1.68 16 15 N -0.91 -53.79 12.92 21.45 0.28 -53.52 16 16 Si 0.94 45.33 29.54 68.60 2.03 47.36 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 C -0.19 -8.28 9.96 30.62 0.30 -7.97 16 21 C -0.16 -7.89 9.41 30.62 0.29 -7.60 16 22 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 0.87 7.84 -2.39 -0.02 0.85 16 24 H 0.07 0.84 7.84 -2.39 -0.02 0.82 16 25 H 0.17 2.44 6.91 -2.91 -0.02 2.42 16 26 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.04 1.39 7.96 -2.39 -0.02 1.37 16 29 H 0.34 13.73 8.78 -89.69 -0.79 12.94 16 30 H 0.04 2.30 8.13 -2.39 -0.02 2.28 16 31 H 0.01 0.23 8.09 -2.39 -0.02 0.21 16 32 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -65.55 321.72 1.53 -64.01 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.28 Total: 19.05 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 4.54 Total: -37.61 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.02 Total: -85.20 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.98 Total: -9.90 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.32 Total: 2.28 kcal Total: -65.55 1.53 -64.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336712215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.825 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds