Wall clock time and date at job start Mon Mar 30 2020 01:01:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.36235 * 116.99590 * 2 1
4 4 C 1.38663 * 122.59071 * 0.02931 * 3 2 1
5 5 C 1.33432 * 114.88856 * 179.97438 * 4 3 2
6 6 S 1.75865 * 109.65621 * 0.02562 * 5 4 3
7 7 C 1.33638 * 122.58252 * 179.73130 * 3 2 1
8 8 C 1.50694 * 125.19437 * 359.97438 * 7 3 2
9 9 N 1.46899 * 109.47537 * 89.99956 * 8 7 3
10 10 C 1.46895 * 111.00280 * 179.97438 * 9 8 7
11 11 C 1.52999 * 109.47065 * 185.34799 * 10 9 8
12 12 C 1.50696 * 115.55112 * 65.05114 * 11 10 9
13 13 H 1.08002 * 120.00041 * 265.44472 * 12 11 10
14 14 C 1.37880 * 120.00196 * 85.44154 * 12 11 10
15 15 N 1.31512 * 119.99670 * 353.60202 * 14 12 11
16 16 Si 1.86799 * 120.00067 * 173.59596 * 14 12 11
17 17 H 1.48507 * 109.47202 * 0.02562 * 16 14 12
18 18 H 1.48504 * 109.46917 * 120.00027 * 16 14 12
19 19 H 1.48496 * 109.47579 * 240.00510 * 16 14 12
20 20 C 1.53008 * 117.50051 * 279.37911 * 11 10 9
21 21 C 1.53001 * 117.49976 * 210.71999 * 11 10 9
22 22 H 1.08998 * 109.46727 * 179.97438 * 1 2 3
23 23 H 1.08997 * 109.46843 * 59.99697 * 1 2 3
24 24 H 1.09000 * 109.47085 * 299.99685 * 1 2 3
25 25 H 1.07999 * 122.55319 * 359.95490 * 4 3 2
26 26 H 1.08000 * 125.16946 * 179.97438 * 5 4 3
27 27 H 1.09005 * 109.46824 * 209.99724 * 8 7 3
28 28 H 1.09000 * 109.47536 * 329.99126 * 8 7 3
29 29 H 1.00902 * 110.99748 * 303.95056 * 9 8 7
30 30 H 1.08998 * 109.47533 * 305.35012 * 10 9 8
31 31 H 1.09000 * 109.46940 * 65.34630 * 10 9 8
32 32 H 0.97009 * 119.99635 * 179.97438 * 15 14 12
33 33 H 1.08994 * 117.49520 * 0.02562 * 20 11 10
34 34 H 1.08995 * 117.49880 * 145.02126 * 20 11 10
35 35 H 1.09001 * 117.50251 * 214.98337 * 21 11 10
36 36 H 1.09002 * 117.50061 * 359.97438 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0474 1.2139 0.0000
4 6 1.3455 2.4097 0.0006
5 6 2.1050 3.5068 0.0010
6 16 3.8034 3.0504 0.0000
7 6 3.3774 1.3440 0.0053
8 6 4.3617 0.2030 0.0124
9 7 4.6874 -0.1715 -1.3702
10 6 5.6472 -1.2831 -1.4025
11 6 6.0630 -1.5560 -2.8494
12 6 6.8279 -0.4478 -3.5259
13 1 6.3049 0.2785 -4.1304
14 6 8.1955 -0.3609 -3.3731
15 7 8.8163 -1.1660 -2.5389
16 14 9.1663 0.9001 -4.3512
17 1 8.2401 1.6786 -5.2123
18 1 9.8644 1.8201 -3.4175
19 1 10.1661 0.2048 -5.2009
20 6 5.1122 -2.3875 -3.7129
21 6 6.4281 -2.9948 -3.2201
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5139 -0.8899
24 1 -0.3633 0.5138 0.8900
25 1 0.2662 2.4501 0.0004
26 1 1.7333 4.5208 0.0011
27 1 5.2708 0.5105 0.5293
28 1 3.9231 -0.6521 0.5267
29 1 3.8527 -0.3989 -1.8895
30 1 6.5270 -1.0207 -0.8149
31 1 5.1833 -2.1758 -0.9832
32 1 9.7786 -1.1051 -2.4317
33 1 4.1903 -2.7397 -3.2503
34 1 5.0403 -2.1332 -4.7703
35 1 7.2213 -3.1399 -3.9535
36 1 6.3724 -3.7470 -2.4331
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000336712215.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:01:32
Heat of formation + Delta-G solvation = 6.812314 kcal
Electronic energy + Delta-G solvation = -17960.853563 eV
Core-core repulsion = 15151.365064 eV
Total energy + Delta-G solvation = -2809.488499 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.74916 -38.81543 -36.92124 -35.81182 -33.88658 -31.37941 -28.39621 -27.55600
-26.58486 -24.98692 -23.53383 -22.78448 -20.91757 -20.41760 -18.68075 -17.87830
-17.50584 -16.73479 -16.65204 -16.27070 -15.88378 -15.47814 -15.25427 -14.90600
-14.59755 -14.01019 -13.71037 -13.58988 -13.09583 -13.05400 -12.87137 -12.76842
-12.56153 -12.30132 -12.21679 -12.00976 -11.84347 -11.62630 -11.33382 -10.72839
-10.37310 -9.94976 -9.57202 -9.11136 -8.84726 -8.02369 -6.08368 0.07128
0.70807 1.08063 1.41916 1.44390 1.55422 1.76875 2.49157 2.74364
3.27356 3.36302 3.69700 3.85117 4.15112 4.26354 4.37953 4.41525
4.45872 4.55036 4.61493 4.69375 4.74000 4.78004 4.82084 4.89459
4.98948 5.02885 5.06760 5.27960 5.43890 5.64281 5.74802 5.88684
6.31412 6.43105 6.50258 6.70396 6.94739 7.56636 9.07154
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.020310 B = 0.005549 C = 0.004683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1378.333164 B = 5044.877757 C = 5977.350987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.331 6.331
3 C 0.098 3.902
4 C -0.196 4.196
5 C -0.181 4.181
6 S 0.130 5.870
7 C -0.248 4.248
8 C 0.148 3.852
9 N -0.669 5.669
10 C 0.124 3.876
11 C 0.024 3.976
12 C -0.478 4.478
13 H 0.046 0.954
14 C 0.022 3.978
15 N -0.913 5.913
16 Si 0.944 3.056
17 H -0.270 1.270
18 H -0.284 1.284
19 H -0.282 1.282
20 C -0.188 4.188
21 C -0.163 4.163
22 H 0.111 0.889
23 H 0.063 0.937
24 H 0.067 0.933
25 H 0.172 0.828
26 H 0.201 0.799
27 H 0.062 0.938
28 H 0.038 0.962
29 H 0.335 0.665
30 H 0.043 0.957
31 H 0.005 0.995
32 H 0.256 0.744
33 H 0.086 0.914
34 H 0.076 0.924
35 H 0.059 0.941
36 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.393 6.674 7.091 19.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.246 6.246
3 C 0.041 3.959
4 C -0.228 4.228
5 C -0.317 4.317
6 S 0.393 5.607
7 C -0.366 4.366
8 C 0.017 3.983
9 N -0.300 5.300
10 C -0.005 4.005
11 C 0.024 3.976
12 C -0.516 4.516
13 H 0.064 0.936
14 C -0.177 4.177
15 N -0.552 5.552
16 Si 0.771 3.229
17 H -0.195 1.195
18 H -0.210 1.210
19 H -0.208 1.208
20 C -0.226 4.226
21 C -0.201 4.201
22 H 0.129 0.871
23 H 0.081 0.919
24 H 0.085 0.915
25 H 0.189 0.811
26 H 0.218 0.782
27 H 0.081 0.919
28 H 0.056 0.944
29 H 0.153 0.847
30 H 0.061 0.939
31 H 0.023 0.977
32 H 0.065 0.935
33 H 0.104 0.896
34 H 0.095 0.905
35 H 0.077 0.923
36 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -15.277 7.728 7.096 18.532
hybrid contribution -1.032 -1.039 -0.205 1.479
sum -16.309 6.688 6.891 18.926
Atomic orbital electron populations
1.23290 0.76562 1.05140 1.02226 1.86142 1.23226 1.25525 1.89687
1.17922 0.90767 0.86105 1.01118 1.20380 1.02717 0.90434 1.09250
1.25875 0.95371 1.04015 1.06432 1.84448 1.06981 0.96663 1.72642
1.23468 0.95341 0.99009 1.18750 1.19954 0.94960 0.92807 0.90537
1.60276 1.16295 1.41598 1.11842 1.21197 0.93396 0.89238 0.96712
1.18931 0.97014 0.90307 0.91389 1.20541 0.91390 1.10937 1.28711
0.93599 1.25580 0.98646 0.97491 0.96002 1.70124 1.08803 1.39901
1.36386 0.85719 0.78730 0.79544 0.78914 1.19477 1.21037 1.20774
1.22960 0.92887 1.07006 0.99708 1.22431 0.97123 0.98175 1.02374
0.87078 0.91865 0.91452 0.81067 0.78160 0.91918 0.94368 0.84708
0.93852 0.97690 0.93503 0.89572 0.90533 0.92262 0.91060
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.36 9.92 113.37 1.12 1.49 16
2 O -0.33 -8.93 10.16 -96.24 -0.98 -9.90 16
3 C 0.10 2.73 6.59 21.33 0.14 2.87 16
4 C -0.20 -4.13 9.16 21.28 0.19 -3.94 16
5 C -0.18 -3.64 11.22 66.73 0.75 -2.89 16
6 S 0.13 3.60 23.32 -56.49 -1.32 2.28 16
7 C -0.25 -8.00 6.03 24.64 0.15 -7.85 16
8 C 0.15 5.46 6.01 85.56 0.51 5.97 16
9 N -0.67 -28.38 6.36 -517.96 -3.30 -31.68 16
10 C 0.12 5.83 5.51 86.30 0.48 6.31 16
11 C 0.02 1.23 1.55 -52.93 -0.08 1.15 16
12 C -0.48 -27.04 8.74 25.60 0.22 -26.82 16
13 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16
14 C 0.02 1.22 5.39 84.66 0.46 1.68 16
15 N -0.91 -53.79 12.92 21.45 0.28 -53.52 16
16 Si 0.94 45.33 29.54 68.60 2.03 47.36 16
17 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16
18 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16
19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16
20 C -0.19 -8.28 9.96 30.62 0.30 -7.97 16
21 C -0.16 -7.89 9.41 30.62 0.29 -7.60 16
22 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16
23 H 0.06 0.87 7.84 -2.39 -0.02 0.85 16
24 H 0.07 0.84 7.84 -2.39 -0.02 0.82 16
25 H 0.17 2.44 6.91 -2.91 -0.02 2.42 16
26 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16
27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16
28 H 0.04 1.39 7.96 -2.39 -0.02 1.37 16
29 H 0.34 13.73 8.78 -89.69 -0.79 12.94 16
30 H 0.04 2.30 8.13 -2.39 -0.02 2.28 16
31 H 0.01 0.23 8.09 -2.39 -0.02 0.21 16
32 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16
33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16
34 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16
35 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16
36 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16
Total: -1.00 -65.55 321.72 1.53 -64.01
By element:
Atomic # 1 Polarization: 18.77 SS G_CDS: 0.28 Total: 19.05 kcal
Atomic # 6 Polarization: -42.15 SS G_CDS: 4.54 Total: -37.61 kcal
Atomic # 7 Polarization: -82.18 SS G_CDS: -3.02 Total: -85.20 kcal
Atomic # 8 Polarization: -8.93 SS G_CDS: -0.98 Total: -9.90 kcal
Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal
Atomic # 16 Polarization: 3.60 SS G_CDS: -1.32 Total: 2.28 kcal
Total: -65.55 1.53 -64.01 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336712215.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.825 kcal
(2) G-P(sol) polarization free energy of solvation -65.548 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.277 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.812 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds