Wall clock time and date at job start Mon Mar 30 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35958 * 116.99691 * 2 1 4 4 C 1.38656 * 120.06456 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.96814 * 179.70524 * 4 3 2 6 6 C 1.38261 * 120.09619 * 0.54882 * 5 4 3 7 7 C 1.50696 * 119.94037 * 179.72742 * 6 5 4 8 8 C 1.50706 * 109.47007 * 269.72569 * 7 6 5 9 9 O 1.21285 * 119.99910 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99814 * 179.72687 * 8 7 6 11 11 C 1.46493 * 120.00088 * 0.26576 * 10 8 7 12 12 C 1.37101 * 119.99682 * 180.27502 * 10 8 7 13 13 H 1.08005 * 120.00045 * 22.39419 * 12 10 8 14 14 C 1.38946 * 119.99787 * 202.39648 * 12 10 8 15 15 N 1.31414 * 119.99903 * 11.61539 * 14 12 10 16 16 Si 1.86797 * 120.00018 * 191.60658 * 14 12 10 17 17 H 1.48505 * 109.46977 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46865 * 120.00058 * 16 14 12 19 19 H 1.48494 * 109.47381 * 240.00277 * 16 14 12 20 20 C 1.38257 * 120.12445 * 359.44676 * 6 5 4 21 21 C 1.38339 * 120.03118 * 0.27685 * 20 6 5 22 22 F 1.35093 * 120.04892 * 179.97438 * 21 20 6 23 23 H 1.08996 * 109.47593 * 300.00794 * 1 2 3 24 24 H 1.09003 * 109.46484 * 60.00761 * 1 2 3 25 25 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.01491 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.95336 * 180.29309 * 5 4 3 28 28 H 1.08994 * 109.47434 * 149.72146 * 7 6 5 29 29 H 1.09002 * 109.47305 * 29.72174 * 7 6 5 30 30 H 1.09007 * 109.47171 * 92.15576 * 11 10 8 31 31 H 1.08998 * 109.47197 * 212.15634 * 11 10 8 32 32 H 1.08996 * 109.47420 * 332.15737 * 11 10 8 33 33 H 0.96995 * 119.99737 * 179.97438 * 15 14 12 34 34 H 1.08003 * 119.98813 * 180.25772 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6777 0.0009 7 6 3.9849 5.0212 0.0014 8 6 4.2123 5.4697 -1.4193 9 8 3.8556 4.7672 -2.3414 10 7 4.8076 6.6536 -1.6651 11 6 5.2388 7.5019 -0.5513 12 6 5.0094 7.0642 -2.9576 13 1 4.4031 6.6584 -3.7540 14 6 5.9940 8.0021 -3.2428 15 7 6.8783 8.3260 -2.3263 16 14 6.0608 8.8026 -4.9293 17 1 4.9614 8.2702 -5.7738 18 1 5.9068 10.2726 -4.7858 19 1 7.3669 8.5018 -5.5686 20 6 4.0579 2.5199 0.0004 21 6 3.4333 1.2856 0.0000 22 9 4.1713 0.1540 -0.0010 23 1 -0.3634 0.5139 0.8898 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2136 2.3200 0.0005 27 1 1.3341 4.5115 0.0119 28 1 4.9429 4.9418 0.5151 29 1 3.3561 5.7481 0.5156 30 1 6.2762 7.2767 -0.3035 31 1 5.1531 8.5499 -0.8384 32 1 4.6081 7.3103 0.3167 33 1 7.5658 8.9805 -2.5255 34 1 5.1363 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337518189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:03 Heat of formation + Delta-G solvation = -82.749891 kcal Electronic energy + Delta-G solvation = -19828.209707 eV Core-core repulsion = 16448.624323 eV Total energy + Delta-G solvation = -3379.585384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.55695 -39.96962 -38.63741 -37.22014 -34.63753 -32.01981 -31.31611 -30.54950 -28.17312 -26.75877 -25.89720 -24.13094 -22.61661 -21.55168 -18.96368 -18.16802 -16.87443 -16.78187 -16.52243 -16.12038 -15.89435 -14.93228 -14.73109 -14.60675 -14.40580 -14.18210 -14.01921 -13.62767 -12.85922 -12.50371 -12.18716 -12.07969 -11.94069 -11.51766 -11.44560 -11.18415 -11.13615 -10.94045 -10.91789 -10.83553 -10.31655 -10.22756 -9.03438 -8.73731 -8.44528 -7.88469 -7.67956 -6.30996 -3.87525 1.34122 1.43355 3.15057 3.15985 3.25632 3.32510 3.71958 3.89475 4.16048 4.38685 4.78025 4.84283 4.97456 5.02983 5.10490 5.13921 5.27067 5.34533 5.45737 5.63658 5.80325 5.88787 5.98549 6.06048 6.25890 6.29589 6.39008 6.76320 6.79568 6.87756 7.22117 7.35311 7.57162 8.13513 8.49041 9.19710 9.42974 9.98758 10.72671 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.004121 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.051135 B = 6793.172832 C = 6860.050720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.081 3.919 4 C -0.180 4.180 5 C -0.078 4.078 6 C -0.048 4.048 7 C -0.095 4.095 8 C 0.448 3.552 9 O -0.582 6.582 10 N -0.449 5.449 11 C 0.111 3.889 12 C -0.304 4.304 13 H 0.099 0.901 14 C 0.029 3.971 15 N -0.884 5.884 16 Si 0.925 3.075 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.103 4.103 21 C 0.069 3.931 22 F -0.137 7.137 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 -7.948 8.845 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.036 3.964 4 C -0.198 4.198 5 C -0.096 4.096 6 C -0.049 4.049 7 C -0.135 4.135 8 C 0.235 3.765 9 O -0.467 6.467 10 N -0.168 5.168 11 C -0.032 4.032 12 C -0.432 4.432 13 H 0.116 0.884 14 C -0.173 4.173 15 N -0.524 5.524 16 Si 0.752 3.248 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.121 4.121 21 C 0.049 3.951 22 F -0.116 7.116 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.397 -8.370 8.393 15.127 hybrid contribution 0.167 0.545 -0.758 0.949 sum -9.230 -7.825 7.635 14.308 Atomic orbital electron populations 1.23053 0.78425 1.03801 1.01431 1.86099 1.21338 1.26145 1.89233 1.18895 0.90724 0.85377 1.01429 1.21004 0.99842 0.91448 1.07532 1.20839 0.93958 0.97137 0.97665 1.19223 0.93133 0.94101 0.98425 1.20630 1.01390 0.93465 0.98002 1.19887 0.85018 0.82127 0.89449 1.90545 1.55738 1.54459 1.45929 1.43610 1.51604 1.14856 1.06712 1.21521 0.98452 0.96433 0.86837 1.19710 1.16732 1.22210 0.84568 0.88362 1.25332 0.94460 0.98229 0.99310 1.70002 1.15199 1.33001 1.34198 0.85870 0.78360 0.78620 0.81913 1.19258 1.20692 1.20744 1.20861 1.01020 0.89698 1.00556 1.16867 0.85838 0.82787 1.09566 1.91463 1.76539 1.49145 1.94445 0.92646 0.92514 0.88329 0.84831 0.85258 0.89085 0.89188 0.92369 0.91285 0.95469 0.92347 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.44 10.36 -19.61 -0.20 -4.64 16 3 C 0.08 1.26 6.69 -39.18 -0.26 0.99 16 4 C -0.18 -2.47 9.04 -39.45 -0.36 -2.83 16 5 C -0.08 -1.17 9.69 -39.59 -0.38 -1.55 16 6 C -0.05 -0.81 4.37 -104.61 -0.46 -1.27 16 7 C -0.09 -1.65 4.35 -29.03 -0.13 -1.78 16 8 C 0.45 10.64 7.62 -10.98 -0.08 10.56 16 9 O -0.58 -16.04 15.73 5.55 0.09 -15.96 16 10 N -0.45 -11.31 3.02 -122.20 -0.37 -11.68 16 11 C 0.11 2.41 8.53 59.84 0.51 2.92 16 12 C -0.30 -8.46 9.29 -14.93 -0.14 -8.60 16 13 H 0.10 2.88 7.41 -52.48 -0.39 2.49 16 14 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 15 N -0.88 -23.40 10.62 55.50 0.59 -22.81 16 16 Si 0.93 20.76 29.57 -169.99 -5.03 15.73 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.10 -1.74 9.67 -39.54 -0.38 -2.12 16 21 C 0.07 1.17 7.31 -39.30 -0.29 0.88 16 22 F -0.14 -2.38 17.11 2.25 0.04 -2.34 16 23 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 24 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 27 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 29 H 0.09 1.33 7.34 -51.93 -0.38 0.95 16 30 H 0.06 1.31 7.54 -51.93 -0.39 0.92 16 31 H 0.07 1.58 7.06 -51.93 -0.37 1.21 16 32 H 0.03 0.47 6.35 -51.93 -0.33 0.14 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.14 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 297.16 15.07 4.48 4.48 Total: -1.00 -32.55 297.16 -5.28 -37.83 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -3.81 Total: 0.27 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.07 Total: -0.87 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.22 Total: -34.49 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.12 Total: -20.60 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.55 -5.28 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337518189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.924 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds