Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35958 * 116.99691 * 2 1 4 4 C 1.38656 * 120.06456 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.96814 * 179.70524 * 4 3 2 6 6 C 1.38261 * 120.09619 * 0.54882 * 5 4 3 7 7 C 1.50696 * 119.94037 * 179.72742 * 6 5 4 8 8 C 1.50706 * 109.47007 * 269.72569 * 7 6 5 9 9 O 1.21285 * 119.99910 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99814 * 179.72687 * 8 7 6 11 11 C 1.46493 * 120.00088 * 0.26576 * 10 8 7 12 12 C 1.37101 * 119.99682 * 180.27502 * 10 8 7 13 13 H 1.08005 * 120.00045 * 22.39419 * 12 10 8 14 14 C 1.38946 * 119.99787 * 202.39648 * 12 10 8 15 15 N 1.31414 * 119.99903 * 11.61539 * 14 12 10 16 16 Si 1.86797 * 120.00018 * 191.60658 * 14 12 10 17 17 H 1.48505 * 109.46977 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46865 * 120.00058 * 16 14 12 19 19 H 1.48494 * 109.47381 * 240.00277 * 16 14 12 20 20 C 1.38257 * 120.12445 * 359.44676 * 6 5 4 21 21 C 1.38339 * 120.03118 * 0.27685 * 20 6 5 22 22 F 1.35093 * 120.04892 * 179.97438 * 21 20 6 23 23 H 1.08996 * 109.47593 * 300.00794 * 1 2 3 24 24 H 1.09003 * 109.46484 * 60.00761 * 1 2 3 25 25 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.01491 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.95336 * 180.29309 * 5 4 3 28 28 H 1.08994 * 109.47434 * 149.72146 * 7 6 5 29 29 H 1.09002 * 109.47305 * 29.72174 * 7 6 5 30 30 H 1.09007 * 109.47171 * 92.15576 * 11 10 8 31 31 H 1.08998 * 109.47197 * 212.15634 * 11 10 8 32 32 H 1.08996 * 109.47420 * 332.15737 * 11 10 8 33 33 H 0.96995 * 119.99737 * 179.97438 * 15 14 12 34 34 H 1.08003 * 119.98813 * 180.25772 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6777 0.0009 7 6 3.9849 5.0212 0.0014 8 6 4.2123 5.4697 -1.4193 9 8 3.8556 4.7672 -2.3414 10 7 4.8076 6.6536 -1.6651 11 6 5.2388 7.5019 -0.5513 12 6 5.0094 7.0642 -2.9576 13 1 4.4031 6.6584 -3.7540 14 6 5.9940 8.0021 -3.2428 15 7 6.8783 8.3260 -2.3263 16 14 6.0608 8.8026 -4.9293 17 1 4.9614 8.2702 -5.7738 18 1 5.9068 10.2726 -4.7858 19 1 7.3669 8.5018 -5.5686 20 6 4.0579 2.5199 0.0004 21 6 3.4333 1.2856 0.0000 22 9 4.1713 0.1540 -0.0010 23 1 -0.3634 0.5139 0.8898 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2136 2.3200 0.0005 27 1 1.3341 4.5115 0.0119 28 1 4.9429 4.9418 0.5151 29 1 3.3561 5.7481 0.5156 30 1 6.2762 7.2767 -0.3035 31 1 5.1531 8.5499 -0.8384 32 1 4.6081 7.3103 0.3167 33 1 7.5658 8.9805 -2.5255 34 1 5.1363 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337518189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -103.308949 kcal Electronic energy + Delta-G solvation = -19829.101215 eV Core-core repulsion = 16448.624323 eV Total energy + Delta-G solvation = -3380.476891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.84578 -41.14677 -40.26952 -38.49249 -36.57075 -33.77572 -32.87123 -31.71322 -29.31808 -28.21049 -27.38931 -25.93199 -23.77811 -22.85155 -20.66344 -19.25857 -18.84634 -17.95479 -17.92246 -17.66582 -17.12382 -16.48636 -16.10052 -16.03427 -15.87120 -15.75591 -15.17307 -14.98875 -14.32479 -14.13282 -13.65818 -13.37892 -13.15629 -13.09270 -13.01015 -12.69926 -12.66278 -12.49299 -12.17454 -12.10949 -12.04591 -11.94095 -11.00108 -10.34924 -9.90931 -9.65059 -9.10301 -8.30246 -5.95516 0.14779 0.23005 1.36528 1.41681 1.55067 2.07689 2.20274 2.28407 2.52481 3.12028 3.19232 3.26278 3.67265 3.77994 4.03615 4.24857 4.25925 4.40091 4.40879 4.48891 4.50901 4.66572 4.71899 4.78962 4.92733 5.07989 5.10825 5.15786 5.45636 5.47293 5.54822 5.65147 6.12892 6.30823 6.52126 7.20845 7.52279 8.08309 8.70975 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.004121 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.051135 B = 6793.172832 C = 6860.050720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.082 3.918 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.071 4.071 7 C -0.080 4.080 8 C 0.440 3.560 9 O -0.629 6.629 10 N -0.466 5.466 11 C 0.120 3.880 12 C -0.342 4.342 13 H 0.069 0.931 14 C -0.003 4.003 15 N -0.897 5.897 16 Si 0.986 3.014 17 H -0.275 1.275 18 H -0.265 1.265 19 H -0.278 1.278 20 C -0.114 4.114 21 C 0.040 3.960 22 F -0.147 7.147 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.171 0.829 27 H 0.152 0.848 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.272 0.728 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 -7.505 9.794 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.036 3.964 4 C -0.191 4.191 5 C -0.096 4.096 6 C -0.072 4.072 7 C -0.120 4.120 8 C 0.230 3.770 9 O -0.516 6.516 10 N -0.186 5.186 11 C -0.023 4.023 12 C -0.470 4.470 13 H 0.087 0.913 14 C -0.204 4.204 15 N -0.536 5.536 16 Si 0.810 3.190 17 H -0.200 1.200 18 H -0.189 1.189 19 H -0.203 1.203 20 C -0.133 4.133 21 C 0.020 3.980 22 F -0.126 7.126 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.188 0.812 27 H 0.170 0.830 28 H 0.126 0.874 29 H 0.143 0.857 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.902 -7.917 9.380 16.417 hybrid contribution 0.560 0.310 -1.039 1.220 sum -10.341 -7.607 8.341 15.309 Atomic orbital electron populations 1.23448 0.75675 1.05928 1.02766 1.86089 1.24195 1.25655 1.88883 1.19063 0.90386 0.86573 1.00351 1.21370 1.01567 0.90237 1.05881 1.21184 0.93419 0.98607 0.96342 1.19294 0.94155 0.93528 1.00188 1.20551 1.03212 0.94549 0.93671 1.20953 0.83172 0.81102 0.91744 1.90505 1.57219 1.55631 1.48255 1.43885 1.51974 1.16035 1.06674 1.21490 0.98738 0.94836 0.87255 1.19629 1.17770 1.23949 0.85633 0.91284 1.26030 0.93684 0.97988 1.02719 1.70073 1.15148 1.32965 1.35461 0.84982 0.77966 0.78327 0.77705 1.19979 1.18943 1.20338 1.20947 1.01201 0.90164 1.00998 1.17140 0.86903 0.82557 1.11372 1.91424 1.76928 1.49559 1.94710 0.90653 0.91665 0.86052 0.81169 0.83048 0.87399 0.85740 0.93675 0.93037 0.90595 0.91817 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.89 10.36 -93.07 -0.96 -9.86 16 3 C 0.08 2.44 6.69 22.53 0.15 2.59 16 4 C -0.17 -4.28 9.04 22.36 0.20 -4.08 16 5 C -0.08 -2.14 9.69 22.26 0.22 -1.93 16 6 C -0.07 -2.31 4.37 -19.86 -0.09 -2.40 16 7 C -0.08 -2.65 4.35 29.10 0.13 -2.53 16 8 C 0.44 20.92 7.62 87.66 0.67 21.59 16 9 O -0.63 -35.40 15.73 -3.04 -0.05 -35.45 16 10 N -0.47 -23.63 3.02 -658.90 -1.99 -25.62 16 11 C 0.12 5.05 8.53 127.77 1.09 6.14 16 12 C -0.34 -19.44 9.29 84.04 0.78 -18.66 16 13 H 0.07 4.23 7.41 -2.91 -0.02 4.21 16 14 C 0.00 -0.15 5.11 84.93 0.43 0.29 16 15 N -0.90 -47.34 10.62 21.66 0.23 -47.11 16 16 Si 0.99 42.67 29.57 68.60 2.03 44.70 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 20 C -0.11 -3.88 9.67 22.30 0.22 -3.67 16 21 C 0.04 1.36 7.31 22.45 0.16 1.52 16 22 F -0.15 -5.23 17.11 44.97 0.77 -4.46 16 23 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 24 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 25 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.17 2.86 6.30 -2.91 -0.02 2.84 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.11 3.20 8.05 -2.39 -0.02 3.18 16 29 H 0.12 3.23 7.34 -2.39 -0.02 3.21 16 30 H 0.04 2.00 7.54 -2.38 -0.02 1.98 16 31 H 0.05 2.32 7.06 -2.39 -0.02 2.30 16 32 H 0.08 2.40 6.35 -2.39 -0.02 2.39 16 33 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -72.66 297.16 6.22 -66.44 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.12 Total: 11.14 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.07 Total: 0.21 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.76 Total: -72.73 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.01 Total: -45.30 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.77 Total: -4.46 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.66 6.22 -66.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337518189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.870 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds