Wall clock time and date at job start Mon Mar 30 2020 00:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47464 * 2 1 4 4 O 1.42908 * 109.46929 * 119.99724 * 2 1 3 5 5 C 1.35952 * 116.99739 * 275.33421 * 4 2 1 6 6 C 1.38665 * 120.06532 * 5.28811 * 5 4 2 7 7 C 1.38179 * 119.96759 * 180.02562 * 6 5 4 8 8 C 1.38260 * 120.10098 * 359.97438 * 7 6 5 9 9 C 1.38261 * 120.12001 * 0.02562 * 8 7 6 10 10 C 1.38327 * 120.03311 * 0.27313 * 9 8 7 11 11 F 1.35097 * 120.04918 * 179.72589 * 10 9 8 12 12 C 1.50699 * 109.47180 * 239.99335 * 2 1 3 13 13 O 1.21290 * 120.00290 * 248.62018 * 12 2 1 14 14 N 1.34780 * 119.99962 * 68.62002 * 12 2 1 15 15 C 1.46499 * 119.99802 * 4.74463 * 14 12 2 16 16 C 1.37094 * 120.00078 * 184.74419 * 14 12 2 17 17 H 1.07998 * 120.00074 * 337.55495 * 16 14 12 18 18 C 1.38955 * 119.99921 * 157.55393 * 16 14 12 19 19 N 1.31405 * 119.99943 * 347.86831 * 18 16 14 20 20 Si 1.86799 * 119.99924 * 167.86847 * 18 16 14 21 21 H 1.48493 * 109.47274 * 94.98258 * 20 18 16 22 22 H 1.48504 * 109.46918 * 214.98348 * 20 18 16 23 23 H 1.48507 * 109.47072 * 334.97833 * 20 18 16 24 24 H 1.09002 * 109.47472 * 184.13652 * 1 2 3 25 25 H 1.09005 * 109.47264 * 304.13622 * 1 2 3 26 26 H 1.08998 * 109.47170 * 64.13497 * 1 2 3 27 27 H 1.07999 * 120.01181 * 359.97438 * 6 5 4 28 28 H 1.08004 * 119.94835 * 180.02562 * 7 6 5 29 29 H 1.07996 * 119.94257 * 180.02562 * 8 7 6 30 30 H 1.08008 * 119.97805 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.47569 * 26.20893 * 15 14 12 32 32 H 1.08994 * 109.47407 * 146.20753 * 15 14 12 33 33 H 1.09000 * 109.47086 * 266.21023 * 15 14 12 34 34 H 0.96998 * 120.00301 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1058 0.0613 2.3063 6 6 1.6504 1.3708 2.3304 7 6 1.7530 2.1160 3.4894 8 6 2.3087 1.5579 4.6258 9 6 2.7641 0.2526 4.6061 10 6 2.6696 -0.4963 3.4469 11 9 3.1194 -1.7700 3.4258 12 6 2.0323 -0.7105 -1.2304 13 8 2.5955 -1.7797 -1.1259 14 7 1.8558 -0.1580 -2.4470 15 6 1.2697 1.1794 -2.5659 16 6 2.2247 -0.8474 -3.5730 17 1 2.9611 -1.6347 -3.5072 18 6 1.6511 -0.5333 -4.7991 19 7 0.5952 0.2473 -4.8498 20 14 2.3810 -1.2207 -6.3752 21 1 1.6590 -2.4614 -6.7551 22 1 2.2466 -0.2173 -7.4617 23 1 3.8178 -1.5297 -6.1617 24 1 -0.3634 -1.0250 0.0741 25 1 -0.3634 0.5767 0.8506 26 1 -0.3633 0.4483 -0.9247 27 1 1.2165 1.8082 1.4434 28 1 1.3978 3.1358 3.5080 29 1 2.3873 2.1426 5.5304 30 1 3.1974 -0.1813 5.4953 31 1 1.4651 1.7443 -1.6544 32 1 1.7142 1.6966 -3.4162 33 1 0.1935 1.0924 -2.7157 34 1 0.1946 0.4663 -5.7056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337533543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:47 Heat of formation + Delta-G solvation = -75.320125 kcal Electronic energy + Delta-G solvation = -20292.171225 eV Core-core repulsion = 16912.908020 eV Total energy + Delta-G solvation = -3379.263205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.59004 -40.19342 -38.53876 -37.05614 -34.71230 -32.30415 -31.06441 -30.62359 -29.44038 -26.37919 -25.13962 -23.87183 -22.68349 -22.10327 -19.22282 -18.40784 -16.97762 -16.86295 -16.51803 -15.86221 -15.74518 -15.04977 -14.81614 -14.70447 -14.38411 -14.13317 -13.79277 -13.37178 -12.87279 -12.65176 -12.38708 -12.01476 -11.84806 -11.81676 -11.47054 -11.35693 -11.25796 -10.97795 -10.84320 -10.71812 -10.38986 -10.27498 -9.10346 -8.97442 -8.45606 -8.06478 -7.77129 -6.38726 -3.95408 1.09556 1.26879 3.10651 3.12946 3.23039 3.31474 3.56611 3.73022 4.11069 4.30409 4.66030 4.74618 4.87290 4.99561 5.04198 5.16716 5.26185 5.36523 5.47491 5.54441 5.88533 5.91805 5.99828 6.05196 6.14585 6.16896 6.32444 6.42456 6.67317 6.74363 7.10510 7.47553 7.51162 8.04548 8.40713 9.10280 9.30653 9.85710 10.64953 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037863 B = 0.004651 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.331002 B = 6019.372408 C = 6493.260757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.275 6.275 5 C 0.109 3.891 6 C -0.190 4.190 7 C -0.089 4.089 8 C -0.140 4.140 9 C -0.118 4.118 10 C 0.064 3.936 11 F -0.131 7.131 12 C 0.450 3.550 13 O -0.565 6.565 14 N -0.440 5.440 15 C 0.108 3.892 16 C -0.306 4.306 17 H 0.101 0.899 18 C 0.032 3.968 19 N -0.883 5.883 20 Si 0.929 3.071 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.268 1.268 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 7.816 13.684 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 H 0.102 0.898 4 O -0.186 6.186 5 C 0.062 3.938 6 C -0.209 4.209 7 C -0.107 4.107 8 C -0.159 4.159 9 C -0.137 4.137 10 C 0.044 3.956 11 F -0.110 7.110 12 C 0.237 3.763 13 O -0.448 6.448 14 N -0.160 5.160 15 C -0.036 4.036 16 C -0.434 4.434 17 H 0.119 0.881 18 C -0.171 4.171 19 N -0.522 5.522 20 Si 0.755 3.245 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.193 1.193 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.158 0.842 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.751 7.107 13.503 15.278 hybrid contribution 0.102 -0.127 -0.930 0.944 sum -0.650 6.979 12.573 14.395 Atomic orbital electron populations 1.22335 0.93295 1.04040 1.03458 1.22403 0.95444 0.96510 0.84318 0.89791 1.86335 1.80219 1.36709 1.15364 1.19255 0.96008 0.91356 0.87216 1.21316 1.05659 0.93287 1.00613 1.20993 0.97882 0.99763 0.92103 1.20852 1.01422 0.94611 0.98995 1.20983 1.01467 0.94880 0.96357 1.17051 1.03874 0.81196 0.93492 1.91516 1.86996 1.35491 1.96954 1.19481 0.86341 0.86862 0.83656 1.90568 1.45691 1.22952 1.85579 1.43453 1.54215 1.14312 1.04069 1.21650 0.99880 0.83574 0.98479 1.19687 1.21687 1.18100 0.83886 0.88139 1.25342 0.94985 0.97085 0.99690 1.69974 1.19145 1.36650 1.26462 0.85870 0.79650 0.78502 0.80462 1.20304 1.20749 1.19283 0.90982 0.91918 0.89370 0.84172 0.85216 0.85157 0.84351 0.95722 0.91118 0.91618 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.04 37.16 0.34 -2.55 16 2 C 0.07 1.42 1.83 -27.89 -0.05 1.37 16 3 H 0.08 1.41 4.96 -51.93 -0.26 1.16 16 4 O -0.27 -5.67 9.21 -39.35 -0.36 -6.03 16 5 C 0.11 1.83 6.60 -39.17 -0.26 1.57 16 6 C -0.19 -2.50 8.27 -39.45 -0.33 -2.82 16 7 C -0.09 -0.93 10.04 -39.60 -0.40 -1.32 16 8 C -0.14 -1.39 10.04 -39.56 -0.40 -1.79 16 9 C -0.12 -1.39 10.02 -39.54 -0.40 -1.78 16 10 C 0.06 1.01 7.31 -39.30 -0.29 0.72 16 11 F -0.13 -2.35 17.11 2.25 0.04 -2.31 16 12 C 0.45 11.35 6.98 -10.98 -0.08 11.27 16 13 O -0.57 -16.72 16.20 -14.21 -0.23 -16.95 16 14 N -0.44 -11.17 3.02 -122.19 -0.37 -11.54 16 15 C 0.11 2.29 7.34 59.85 0.44 2.73 16 16 C -0.31 -8.49 9.31 -14.93 -0.14 -8.63 16 17 H 0.10 2.95 7.38 -52.49 -0.39 2.56 16 18 C 0.03 0.84 5.11 -17.47 -0.09 0.75 16 19 N -0.88 -22.79 10.64 55.50 0.59 -22.20 16 20 Si 0.93 20.52 29.57 -169.99 -5.03 15.49 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.06 0.84 6.84 -51.93 -0.36 0.48 16 26 H 0.09 1.46 5.86 -51.93 -0.30 1.16 16 27 H 0.14 1.67 5.37 -52.49 -0.28 1.39 16 28 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.02 0.42 6.07 -51.93 -0.32 0.10 16 32 H 0.07 1.58 7.19 -51.93 -0.37 1.21 16 33 H 0.07 1.42 6.54 -51.93 -0.34 1.08 16 34 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -32.44 289.81 -6.08 -38.52 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -3.44 Total: 1.14 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.64 Total: -0.49 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.22 Total: -33.74 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.59 Total: -22.97 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.44 -6.08 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337533543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.805 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds