Wall clock time and date at job start Mon Mar 30 2020 00:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47464 * 2 1 4 4 O 1.42908 * 109.46929 * 119.99724 * 2 1 3 5 5 C 1.35952 * 116.99739 * 275.33421 * 4 2 1 6 6 C 1.38665 * 120.06532 * 5.28811 * 5 4 2 7 7 C 1.38179 * 119.96759 * 180.02562 * 6 5 4 8 8 C 1.38260 * 120.10098 * 359.97438 * 7 6 5 9 9 C 1.38261 * 120.12001 * 0.02562 * 8 7 6 10 10 C 1.38327 * 120.03311 * 0.27313 * 9 8 7 11 11 F 1.35097 * 120.04918 * 179.72589 * 10 9 8 12 12 C 1.50699 * 109.47180 * 239.99335 * 2 1 3 13 13 O 1.21290 * 120.00290 * 248.62018 * 12 2 1 14 14 N 1.34780 * 119.99962 * 68.62002 * 12 2 1 15 15 C 1.46499 * 119.99802 * 4.74463 * 14 12 2 16 16 C 1.37094 * 120.00078 * 184.74419 * 14 12 2 17 17 H 1.07998 * 120.00074 * 337.55495 * 16 14 12 18 18 C 1.38955 * 119.99921 * 157.55393 * 16 14 12 19 19 N 1.31405 * 119.99943 * 347.86831 * 18 16 14 20 20 Si 1.86799 * 119.99924 * 167.86847 * 18 16 14 21 21 H 1.48493 * 109.47274 * 94.98258 * 20 18 16 22 22 H 1.48504 * 109.46918 * 214.98348 * 20 18 16 23 23 H 1.48507 * 109.47072 * 334.97833 * 20 18 16 24 24 H 1.09002 * 109.47472 * 184.13652 * 1 2 3 25 25 H 1.09005 * 109.47264 * 304.13622 * 1 2 3 26 26 H 1.08998 * 109.47170 * 64.13497 * 1 2 3 27 27 H 1.07999 * 120.01181 * 359.97438 * 6 5 4 28 28 H 1.08004 * 119.94835 * 180.02562 * 7 6 5 29 29 H 1.07996 * 119.94257 * 180.02562 * 8 7 6 30 30 H 1.08008 * 119.97805 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.47569 * 26.20893 * 15 14 12 32 32 H 1.08994 * 109.47407 * 146.20753 * 15 14 12 33 33 H 1.09000 * 109.47086 * 266.21023 * 15 14 12 34 34 H 0.96998 * 120.00301 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1058 0.0613 2.3063 6 6 1.6504 1.3708 2.3304 7 6 1.7530 2.1160 3.4894 8 6 2.3087 1.5579 4.6258 9 6 2.7641 0.2526 4.6061 10 6 2.6696 -0.4963 3.4469 11 9 3.1194 -1.7700 3.4258 12 6 2.0323 -0.7105 -1.2304 13 8 2.5955 -1.7797 -1.1259 14 7 1.8558 -0.1580 -2.4470 15 6 1.2697 1.1794 -2.5659 16 6 2.2247 -0.8474 -3.5730 17 1 2.9611 -1.6347 -3.5072 18 6 1.6511 -0.5333 -4.7991 19 7 0.5952 0.2473 -4.8498 20 14 2.3810 -1.2207 -6.3752 21 1 1.6590 -2.4614 -6.7551 22 1 2.2466 -0.2173 -7.4617 23 1 3.8178 -1.5297 -6.1617 24 1 -0.3634 -1.0250 0.0741 25 1 -0.3634 0.5767 0.8506 26 1 -0.3633 0.4483 -0.9247 27 1 1.2165 1.8082 1.4434 28 1 1.3978 3.1358 3.5080 29 1 2.3873 2.1426 5.5304 30 1 3.1974 -0.1813 5.4953 31 1 1.4651 1.7443 -1.6544 32 1 1.7142 1.6966 -3.4162 33 1 0.1935 1.0924 -2.7157 34 1 0.1946 0.4663 -5.7056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337533543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:47 Heat of formation + Delta-G solvation = -95.771052 kcal Electronic energy + Delta-G solvation = -20293.058044 eV Core-core repulsion = 16912.908020 eV Total energy + Delta-G solvation = -3380.150024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.81810 -41.55648 -40.13488 -38.33010 -36.72880 -34.10934 -32.65732 -31.60287 -30.52405 -28.23890 -26.93576 -25.28733 -23.81609 -23.27340 -20.89481 -19.65407 -18.97298 -18.04170 -17.94002 -17.40197 -17.02855 -16.56965 -16.35857 -16.19085 -15.66943 -15.51298 -15.37200 -14.90224 -14.17777 -14.04567 -13.82749 -13.48072 -13.32949 -13.15155 -13.00426 -12.89800 -12.66972 -12.56690 -12.45485 -12.13801 -12.05239 -11.88728 -11.07852 -10.41259 -9.90448 -9.77154 -9.20273 -8.38978 -6.05162 0.15379 0.28737 1.33702 1.39776 1.51658 1.80691 1.84993 2.30932 2.63978 2.99747 3.03519 3.29022 3.60204 3.75080 3.85279 3.95447 4.00950 4.28128 4.36394 4.44154 4.55859 4.63059 4.69074 4.97471 5.01743 5.08465 5.13849 5.29526 5.37179 5.40519 5.44662 5.73115 5.99925 6.27888 6.45279 7.08858 7.33150 7.89493 8.62407 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037863 B = 0.004651 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.331002 B = 6019.372408 C = 6493.260757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.087 3.913 3 H 0.114 0.886 4 O -0.317 6.317 5 C 0.069 3.931 6 C -0.191 4.191 7 C -0.077 4.077 8 C -0.123 4.123 9 C -0.113 4.113 10 C 0.023 3.977 11 F -0.158 7.158 12 C 0.431 3.569 13 O -0.628 6.628 14 N -0.448 5.448 15 C 0.113 3.887 16 C -0.351 4.351 17 H 0.067 0.933 18 C 0.007 3.993 19 N -0.888 5.888 20 Si 0.989 3.011 21 H -0.276 1.276 22 H -0.261 1.261 23 H -0.275 1.275 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.174 0.826 30 H 0.162 0.838 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 11.136 15.025 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.131 0.869 4 O -0.231 6.231 5 C 0.023 3.977 6 C -0.210 4.210 7 C -0.095 4.095 8 C -0.141 4.141 9 C -0.131 4.131 10 C 0.003 3.997 11 F -0.137 7.137 12 C 0.220 3.780 13 O -0.515 6.515 14 N -0.167 5.167 15 C -0.029 4.029 16 C -0.479 4.479 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.526 5.526 20 Si 0.813 3.187 21 H -0.201 1.201 22 H -0.185 1.185 23 H -0.200 1.200 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.171 0.829 28 H 0.189 0.811 29 H 0.192 0.808 30 H 0.180 0.820 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.769 10.485 14.851 18.266 hybrid contribution 0.398 -1.072 -1.231 1.680 sum -1.371 9.413 13.620 16.613 Atomic orbital electron populations 1.22292 0.91129 1.03450 1.05227 1.22187 0.96700 0.96425 0.81894 0.86873 1.86255 1.81549 1.38643 1.16658 1.19652 0.98836 0.93058 0.86168 1.21557 1.05228 0.91798 1.02403 1.21522 0.96018 1.01122 0.90793 1.21426 0.98622 0.93618 1.00417 1.21365 1.00724 0.95489 0.95535 1.17701 1.05845 0.80969 0.95167 1.91436 1.87631 1.37408 1.97182 1.20571 0.85358 0.86678 0.85413 1.90508 1.48309 1.25862 1.86804 1.43700 1.53723 1.15531 1.03778 1.21698 0.99156 0.81837 1.00214 1.19596 1.23020 1.19274 0.85988 0.91481 1.26031 0.94974 0.96936 1.01687 1.70016 1.18856 1.36014 1.27681 0.84990 0.78403 0.78273 0.77072 1.20150 1.18523 1.19955 0.93207 0.87887 0.89197 0.82886 0.81059 0.80826 0.82024 0.91228 0.92479 0.91880 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 9.04 71.98 0.65 -4.64 16 2 C 0.09 3.41 1.83 29.85 0.05 3.46 16 3 H 0.11 3.62 4.96 -2.39 -0.01 3.61 16 4 O -0.32 -13.62 9.21 -74.12 -0.68 -14.30 16 5 C 0.07 2.29 6.60 22.53 0.15 2.44 16 6 C -0.19 -4.45 8.27 22.36 0.18 -4.27 16 7 C -0.08 -1.20 10.04 22.26 0.22 -0.97 16 8 C -0.12 -1.81 10.04 22.28 0.22 -1.59 16 9 C -0.11 -2.36 10.02 22.30 0.22 -2.14 16 10 C 0.02 0.72 7.31 22.45 0.16 0.89 16 11 F -0.16 -6.01 17.11 44.97 0.77 -5.24 16 12 C 0.43 22.74 6.98 87.66 0.61 23.35 16 13 O -0.63 -39.88 16.20 15.83 0.26 -39.63 16 14 N -0.45 -23.44 3.02 -658.89 -1.99 -25.43 16 15 C 0.11 4.73 7.34 127.77 0.94 5.67 16 16 C -0.35 -20.33 9.31 84.04 0.78 -19.55 16 17 H 0.07 4.24 7.38 -2.91 -0.02 4.21 16 18 C 0.01 0.35 5.11 84.93 0.43 0.78 16 19 N -0.89 -45.35 10.64 21.66 0.23 -45.12 16 20 Si 0.99 42.29 29.57 68.60 2.03 44.32 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.10 2.47 6.84 -2.38 -0.02 2.45 16 26 H 0.09 2.85 5.86 -2.39 -0.01 2.84 16 27 H 0.15 3.04 5.37 -2.91 -0.02 3.02 16 28 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 30 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.07 2.23 6.07 -2.38 -0.01 2.21 16 32 H 0.06 2.51 7.19 -2.39 -0.02 2.50 16 33 H 0.06 2.66 6.54 -2.39 -0.02 2.64 16 34 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 Total: -1.00 -77.58 289.81 6.39 -71.19 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.13 Total: 10.77 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.64 Total: 3.44 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.76 Total: -70.55 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.43 Total: -53.93 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.77 Total: -5.24 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -77.58 6.39 -71.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337533543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.579 kcal (2) G-P(sol) polarization free energy of solvation -77.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds