Wall clock time and date at job start Mon Mar 30 2020 00:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37102 * 120.00144 * 2 1 4 4 H 1.07996 * 119.99744 * 151.41924 * 3 2 1 5 5 C 1.38950 * 119.99849 * 331.42213 * 3 2 1 6 6 N 1.31416 * 120.00042 * 349.50641 * 5 3 2 7 7 Si 1.86797 * 119.99894 * 169.51212 * 5 3 2 8 8 H 1.48494 * 109.47212 * 89.99727 * 7 5 3 9 9 H 1.48506 * 109.46844 * 209.99772 * 7 5 3 10 10 H 1.48501 * 109.47204 * 329.99675 * 7 5 3 11 11 C 1.34776 * 119.99900 * 179.73398 * 2 1 3 12 12 O 1.21297 * 120.00055 * 179.97438 * 11 2 1 13 13 C 1.50705 * 120.00176 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.47271 * 300.00579 * 13 11 2 15 15 C 1.53005 * 109.46804 * 60.00542 * 13 11 2 16 16 O 1.42896 * 109.46682 * 184.99953 * 15 13 11 17 17 C 1.50700 * 109.47212 * 180.02562 * 13 11 2 18 18 C 1.38242 * 119.97404 * 299.72307 * 17 13 11 19 19 C 1.38201 * 120.02828 * 179.76468 * 18 17 13 20 20 C 1.38464 * 119.96804 * 0.51203 * 19 18 17 21 21 F 1.35104 * 120.02144 * 179.76331 * 20 19 18 22 22 C 1.38457 * 119.94956 * 359.74748 * 20 19 18 23 23 C 1.38193 * 119.97507 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47039 * 84.37219 * 1 2 3 25 25 H 1.09003 * 109.46601 * 204.37248 * 1 2 3 26 26 H 1.09000 * 109.46484 * 324.36900 * 1 2 3 27 27 H 0.96995 * 119.99955 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.46922 * 304.99876 * 15 13 11 29 29 H 1.09001 * 109.46976 * 64.99824 * 15 13 11 30 30 H 0.96708 * 113.99996 * 179.97438 * 16 15 13 31 31 H 1.08001 * 119.98610 * 0.02562 * 18 17 13 32 32 H 1.07998 * 120.01591 * 180.25450 * 19 18 17 33 33 H 1.08001 * 120.01134 * 179.97438 * 22 20 19 34 34 H 1.08002 * 119.98826 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1318 1.2442 0.4474 5 6 1.5828 2.3174 -0.5756 6 7 0.4900 2.2086 -1.2975 7 14 2.3728 3.9911 -0.3235 8 1 3.3598 4.2406 -1.4046 9 1 1.3252 5.0431 -0.3572 10 1 3.0615 4.0204 0.9918 11 6 2.1389 -1.1672 0.0054 12 8 3.3519 -1.1672 0.0049 13 6 1.3854 -2.4723 0.0121 14 1 0.7590 -2.5257 0.9025 15 6 0.5054 -2.5595 -1.2366 16 8 -0.2954 -3.7412 -1.1733 17 6 2.3647 -3.6178 0.0179 18 6 3.2648 -3.7622 -1.0214 19 6 4.1666 -4.8094 -1.0147 20 6 4.1612 -5.7202 0.0282 21 9 5.0391 -6.7471 0.0333 22 6 3.2556 -5.5776 1.0658 23 6 2.3587 -4.5263 1.0598 24 1 -0.3633 0.1008 -1.0227 25 1 -0.3633 -0.9361 0.4241 26 1 -0.3632 0.8353 0.5987 27 1 0.0935 2.9974 -1.6990 28 1 -0.1421 -1.6840 -1.2865 29 1 1.1369 -2.5955 -2.1243 30 1 -0.8801 -3.8614 -1.9342 31 1 3.2661 -3.0539 -1.8367 32 1 4.8724 -4.9197 -1.8247 33 1 3.2503 -6.2877 1.8795 34 1 1.6525 -4.4146 1.8693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339258755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:44 Heat of formation + Delta-G solvation = -92.495352 kcal Electronic energy + Delta-G solvation = -20388.734154 eV Core-core repulsion = 17008.726175 eV Total energy + Delta-G solvation = -3380.007979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.65258 -39.73322 -37.97863 -36.42779 -34.76820 -32.57984 -31.51151 -30.83843 -28.28176 -26.23239 -24.81072 -23.38540 -22.65325 -21.33200 -18.95950 -17.46306 -17.20568 -16.86174 -16.34858 -15.62457 -15.40092 -15.28896 -14.69586 -14.52310 -14.16259 -13.91565 -13.58624 -13.22163 -12.98156 -12.68981 -12.45405 -11.96053 -11.78805 -11.49647 -11.37465 -11.21059 -10.97164 -10.86593 -10.51112 -10.38019 -10.31469 -9.62082 -9.07837 -8.81303 -8.49634 -8.17794 -7.69641 -6.37638 -4.00084 1.47195 1.57948 3.12498 3.21565 3.26751 3.67859 3.88086 4.11674 4.48920 4.52646 4.78801 4.99582 5.04989 5.12383 5.18654 5.46373 5.51629 5.63130 5.66712 5.83161 5.93516 6.05206 6.20669 6.23778 6.36001 6.39947 6.56040 6.72098 6.92242 7.08350 7.19663 7.50354 7.80719 8.08455 8.40251 9.10484 9.31788 9.87773 10.65882 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.005248 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.668184 B = 5333.798400 C = 5929.719409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.443 5.443 3 C -0.308 4.308 4 H 0.096 0.904 5 C 0.034 3.966 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.456 3.544 12 O -0.572 6.572 13 C -0.063 4.063 14 H 0.097 0.903 15 C 0.075 3.925 16 O -0.572 6.572 17 C -0.045 4.045 18 C -0.054 4.054 19 C -0.156 4.156 20 C 0.083 3.917 21 F -0.149 7.149 22 C -0.158 4.158 23 C -0.083 4.083 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.268 0.732 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.376 0.624 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 -10.335 0.231 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.162 5.162 3 C -0.435 4.435 4 H 0.114 0.886 5 C -0.169 4.169 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.194 1.194 11 C 0.242 3.758 12 O -0.456 6.456 13 C -0.085 4.085 14 H 0.115 0.885 15 C -0.002 4.002 16 O -0.377 6.377 17 C -0.045 4.045 18 C -0.072 4.072 19 C -0.175 4.175 20 C 0.064 3.936 21 F -0.127 7.127 22 C -0.177 4.177 23 C -0.101 4.101 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.222 0.778 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.789 -10.270 0.702 10.449 hybrid contribution 0.026 0.883 -0.483 1.007 sum -1.763 -9.388 0.219 9.554 Atomic orbital electron populations 1.21735 0.81597 0.98574 1.02318 1.43510 1.05267 1.04589 1.62788 1.19588 1.03058 0.84929 1.35972 0.88596 1.25378 0.96537 1.00231 0.94759 1.69923 1.20669 1.30363 1.31217 0.85929 0.78641 0.81036 0.79100 1.20268 1.20831 1.19414 1.19644 0.87943 0.84035 0.84128 1.90561 1.13499 1.86576 1.54950 1.20225 0.95381 0.93040 0.99830 0.88497 1.22477 0.93351 0.87969 0.96412 1.86454 1.58154 1.44770 1.48325 1.19355 0.96080 0.94755 0.94335 1.20789 0.92892 0.95222 0.98312 1.21030 1.01643 0.95905 0.98880 1.17654 0.91296 0.87381 0.97282 1.91449 1.67434 1.57153 1.96702 1.20949 0.97320 1.00679 0.98778 1.20815 0.97907 0.93476 0.97934 0.91249 0.94751 0.92155 0.92200 0.90766 0.93372 0.77778 0.85336 0.85230 0.85275 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.12 7.09 59.85 0.42 2.54 16 2 N -0.44 -10.81 3.00 -122.19 -0.37 -11.18 16 3 C -0.31 -8.29 9.16 -14.93 -0.14 -8.43 16 4 H 0.10 2.72 7.52 -52.49 -0.39 2.33 16 5 C 0.03 0.88 5.16 -17.47 -0.09 0.79 16 6 N -0.88 -22.62 10.92 55.50 0.61 -22.01 16 7 Si 0.93 20.26 29.57 -169.99 -5.03 15.23 16 8 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 11 C 0.46 10.63 6.90 -10.98 -0.08 10.56 16 12 O -0.57 -15.27 14.88 5.54 0.08 -15.18 16 13 C -0.06 -1.16 1.80 -92.92 -0.17 -1.33 16 14 H 0.10 1.66 7.15 -51.93 -0.37 1.29 16 15 C 0.08 1.22 5.92 37.16 0.22 1.44 16 16 O -0.57 -7.98 13.41 -35.23 -0.47 -8.45 16 17 C -0.04 -0.80 4.16 -104.62 -0.44 -1.23 16 18 C -0.05 -0.95 7.88 -39.59 -0.31 -1.26 16 19 C -0.16 -2.49 10.03 -39.51 -0.40 -2.88 16 20 C 0.08 1.30 7.30 -39.42 -0.29 1.02 16 21 F -0.15 -2.27 17.27 2.25 0.04 -2.24 16 22 C -0.16 -2.34 10.03 -39.52 -0.40 -2.74 16 23 C -0.08 -1.31 9.67 -39.60 -0.38 -1.69 16 24 H 0.07 1.50 6.30 -51.93 -0.33 1.17 16 25 H 0.03 0.60 5.62 -51.93 -0.29 0.31 16 26 H 0.06 1.32 7.68 -51.93 -0.40 0.92 16 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.07 1.21 4.56 -51.93 -0.24 0.98 16 29 H 0.05 0.78 7.21 -51.93 -0.37 0.41 16 30 H 0.38 3.46 9.12 45.56 0.42 3.87 16 31 H 0.13 2.31 7.48 -52.49 -0.39 1.92 16 32 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.13 1.73 7.94 -52.49 -0.42 1.31 16 LS Contribution 290.47 15.07 4.38 4.38 Total: -1.00 -30.73 290.47 -5.57 -36.30 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -2.77 Total: 6.38 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.04 Total: -3.22 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.24 Total: -33.19 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.39 Total: -23.64 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.73 -5.57 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339258755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.196 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds