Wall clock time and date at job start Mon Mar 30 2020 00:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37102 * 120.00144 * 2 1 4 4 H 1.07996 * 119.99744 * 151.41924 * 3 2 1 5 5 C 1.38950 * 119.99849 * 331.42213 * 3 2 1 6 6 N 1.31416 * 120.00042 * 349.50641 * 5 3 2 7 7 Si 1.86797 * 119.99894 * 169.51212 * 5 3 2 8 8 H 1.48494 * 109.47212 * 89.99727 * 7 5 3 9 9 H 1.48506 * 109.46844 * 209.99772 * 7 5 3 10 10 H 1.48501 * 109.47204 * 329.99675 * 7 5 3 11 11 C 1.34776 * 119.99900 * 179.73398 * 2 1 3 12 12 O 1.21297 * 120.00055 * 179.97438 * 11 2 1 13 13 C 1.50705 * 120.00176 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.47271 * 300.00579 * 13 11 2 15 15 C 1.53005 * 109.46804 * 60.00542 * 13 11 2 16 16 O 1.42896 * 109.46682 * 184.99953 * 15 13 11 17 17 C 1.50700 * 109.47212 * 180.02562 * 13 11 2 18 18 C 1.38242 * 119.97404 * 299.72307 * 17 13 11 19 19 C 1.38201 * 120.02828 * 179.76468 * 18 17 13 20 20 C 1.38464 * 119.96804 * 0.51203 * 19 18 17 21 21 F 1.35104 * 120.02144 * 179.76331 * 20 19 18 22 22 C 1.38457 * 119.94956 * 359.74748 * 20 19 18 23 23 C 1.38193 * 119.97507 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47039 * 84.37219 * 1 2 3 25 25 H 1.09003 * 109.46601 * 204.37248 * 1 2 3 26 26 H 1.09000 * 109.46484 * 324.36900 * 1 2 3 27 27 H 0.96995 * 119.99955 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.46922 * 304.99876 * 15 13 11 29 29 H 1.09001 * 109.46976 * 64.99824 * 15 13 11 30 30 H 0.96708 * 113.99996 * 179.97438 * 16 15 13 31 31 H 1.08001 * 119.98610 * 0.02562 * 18 17 13 32 32 H 1.07998 * 120.01591 * 180.25450 * 19 18 17 33 33 H 1.08001 * 120.01134 * 179.97438 * 22 20 19 34 34 H 1.08002 * 119.98826 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1318 1.2442 0.4474 5 6 1.5828 2.3174 -0.5756 6 7 0.4900 2.2086 -1.2975 7 14 2.3728 3.9911 -0.3235 8 1 3.3598 4.2406 -1.4046 9 1 1.3252 5.0431 -0.3572 10 1 3.0615 4.0204 0.9918 11 6 2.1389 -1.1672 0.0054 12 8 3.3519 -1.1672 0.0049 13 6 1.3854 -2.4723 0.0121 14 1 0.7590 -2.5257 0.9025 15 6 0.5054 -2.5595 -1.2366 16 8 -0.2954 -3.7412 -1.1733 17 6 2.3647 -3.6178 0.0179 18 6 3.2648 -3.7622 -1.0214 19 6 4.1666 -4.8094 -1.0147 20 6 4.1612 -5.7202 0.0282 21 9 5.0391 -6.7471 0.0333 22 6 3.2556 -5.5776 1.0658 23 6 2.3587 -4.5263 1.0598 24 1 -0.3633 0.1008 -1.0227 25 1 -0.3633 -0.9361 0.4241 26 1 -0.3632 0.8353 0.5987 27 1 0.0935 2.9974 -1.6990 28 1 -0.1421 -1.6840 -1.2865 29 1 1.1369 -2.5955 -2.1243 30 1 -0.8801 -3.8614 -1.9342 31 1 3.2661 -3.0539 -1.8367 32 1 4.8724 -4.9197 -1.8247 33 1 3.2503 -6.2877 1.8795 34 1 1.6525 -4.4146 1.8693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339258755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:43 Heat of formation + Delta-G solvation = -113.234403 kcal Electronic energy + Delta-G solvation = -20389.633467 eV Core-core repulsion = 17008.726175 eV Total energy + Delta-G solvation = -3380.907291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.86309 -41.26325 -39.48425 -37.66428 -36.65920 -34.12599 -33.27266 -32.06348 -29.68669 -27.97661 -26.60594 -24.76692 -23.89977 -22.79477 -20.55954 -18.95023 -18.69107 -18.40414 -17.75766 -17.11607 -16.77902 -16.57594 -16.42819 -15.95987 -15.67817 -15.57903 -14.94643 -14.43702 -14.30375 -14.28419 -13.82928 -13.68415 -13.32280 -13.11697 -12.97226 -12.78059 -12.67670 -12.26108 -12.15850 -12.08071 -11.75521 -11.08873 -10.76719 -10.42729 -9.96607 -9.62305 -9.47636 -8.32322 -6.03104 0.20213 0.35065 1.37330 1.42241 1.53700 1.93905 2.27006 2.61891 2.96985 3.11344 3.29329 3.41084 3.70084 3.80797 3.99011 4.11251 4.15142 4.29656 4.39719 4.47031 4.56719 4.66648 4.80280 4.98857 5.02314 5.06963 5.16888 5.29853 5.37009 5.45837 5.63876 5.96310 6.12573 6.47888 6.90441 7.16257 7.43268 7.99953 8.69040 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.005248 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.668184 B = 5333.798400 C = 5929.719409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.457 5.457 3 C -0.343 4.343 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.894 5.894 7 Si 0.985 3.015 8 H -0.278 1.278 9 H -0.267 1.267 10 H -0.271 1.271 11 C 0.451 3.549 12 O -0.614 6.614 13 C -0.054 4.054 14 H 0.114 0.886 15 C 0.088 3.912 16 O -0.572 6.572 17 C -0.066 4.066 18 C -0.073 4.073 19 C -0.160 4.160 20 C 0.076 3.924 21 F -0.146 7.146 22 C -0.151 4.151 23 C -0.086 4.086 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.274 0.726 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.399 0.601 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 -11.248 0.747 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.176 5.176 3 C -0.471 4.471 4 H 0.087 0.913 5 C -0.199 4.199 6 N -0.532 5.532 7 Si 0.809 3.191 8 H -0.204 1.204 9 H -0.192 1.192 10 H -0.196 1.196 11 C 0.239 3.761 12 O -0.501 6.501 13 C -0.075 4.075 14 H 0.132 0.868 15 C 0.010 3.990 16 O -0.380 6.380 17 C -0.066 4.066 18 C -0.091 4.091 19 C -0.179 4.179 20 C 0.057 3.943 21 F -0.125 7.125 22 C -0.169 4.169 23 C -0.104 4.104 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.249 0.751 31 H 0.131 0.869 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.784 -11.199 1.198 11.602 hybrid contribution 0.333 1.085 -0.667 1.316 sum -2.451 -10.115 0.531 10.421 Atomic orbital electron populations 1.21700 0.79651 0.99872 1.01873 1.43739 1.06553 1.04376 1.62922 1.19524 1.02971 0.86920 1.37730 0.91345 1.26045 0.96965 1.02801 0.94050 1.69981 1.20970 1.31401 1.30855 0.85058 0.78052 0.77361 0.78620 1.20403 1.19197 1.19617 1.20467 0.87808 0.85386 0.82411 1.90520 1.15605 1.87538 1.56387 1.20084 0.95586 0.90270 1.01586 0.86829 1.22165 0.93122 0.88740 0.94952 1.86391 1.58322 1.43430 1.49892 1.19472 0.96501 0.95298 0.95358 1.20764 0.94069 0.95808 0.98446 1.21192 1.01496 0.95505 0.99681 1.17798 0.91595 0.87349 0.97516 1.91457 1.67378 1.56930 1.96695 1.21287 0.96029 1.00614 0.99014 1.21103 0.98455 0.93051 0.97758 0.91982 0.91114 0.93573 0.91661 0.91014 0.94123 0.75126 0.86877 0.83685 0.82165 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.62 7.09 127.77 0.91 5.53 16 2 N -0.46 -22.66 3.00 -658.87 -1.98 -24.64 16 3 C -0.34 -19.01 9.16 84.04 0.77 -18.24 16 4 H 0.07 4.07 7.52 -2.91 -0.02 4.05 16 5 C 0.00 0.19 5.16 84.93 0.44 0.63 16 6 N -0.89 -45.61 10.92 21.66 0.24 -45.37 16 7 Si 0.99 41.60 29.57 68.60 2.03 43.63 16 8 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 9 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 C 0.45 21.34 6.90 87.66 0.61 21.95 16 12 O -0.61 -33.86 14.88 -3.08 -0.05 -33.91 16 13 C -0.05 -1.93 1.80 -12.28 -0.02 -1.95 16 14 H 0.11 3.65 7.15 -2.39 -0.02 3.63 16 15 C 0.09 2.74 5.92 71.98 0.43 3.16 16 16 O -0.57 -14.51 13.41 -148.98 -2.00 -16.51 16 17 C -0.07 -2.28 4.16 -19.86 -0.08 -2.36 16 18 C -0.07 -2.57 7.88 22.26 0.18 -2.39 16 19 C -0.16 -5.00 10.03 22.31 0.22 -4.78 16 20 C 0.08 2.26 7.30 22.38 0.16 2.43 16 21 F -0.15 -4.17 17.27 44.97 0.78 -3.39 16 22 C -0.15 -4.05 10.03 22.31 0.22 -3.83 16 23 C -0.09 -2.50 9.67 22.26 0.22 -2.28 16 24 H 0.06 2.65 6.30 -2.39 -0.02 2.63 16 25 H 0.07 2.36 5.62 -2.39 -0.01 2.34 16 26 H 0.05 2.01 7.68 -2.39 -0.02 1.99 16 27 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 28 H 0.07 2.25 4.56 -2.39 -0.01 2.24 16 29 H 0.04 1.31 7.21 -2.39 -0.02 1.30 16 30 H 0.40 6.21 9.12 -74.05 -0.68 5.54 16 31 H 0.11 4.24 7.48 -2.91 -0.02 4.22 16 32 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 34 H 0.15 3.60 7.94 -2.91 -0.02 3.57 16 Total: -1.00 -66.57 290.47 3.53 -63.04 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.47 Total: 19.28 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.04 Total: -2.13 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.74 Total: -70.01 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -2.04 Total: -50.42 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -66.57 3.53 -63.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339258755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.192 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds