Wall clock time and date at job start Mon Mar 30 2020 00:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47364 * 2 1 4 4 O 1.42903 * 109.47180 * 119.99474 * 2 1 3 5 5 C 1.35950 * 116.99970 * 275.15305 * 4 2 1 6 6 C 1.38706 * 120.03405 * 185.76057 * 5 4 2 7 7 C 1.38146 * 119.97074 * 180.28840 * 6 5 4 8 8 C 1.38454 * 120.03274 * 359.45398 * 7 6 5 9 9 F 1.35099 * 119.97241 * 180.26846 * 8 7 6 10 10 C 1.38459 * 120.05730 * 0.25089 * 8 7 6 11 11 C 1.38151 * 120.02931 * 0.02562 * 10 8 7 12 12 C 1.50696 * 109.47540 * 239.99309 * 2 1 3 13 13 O 1.21283 * 120.00323 * 245.00275 * 12 2 1 14 14 N 1.34773 * 120.00108 * 65.00309 * 12 2 1 15 15 C 1.46503 * 120.00443 * 180.02562 * 14 12 2 16 16 C 1.50695 * 109.47028 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99332 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00694 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99569 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47318 * 59.99945 * 20 18 16 22 22 H 1.48505 * 109.47131 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47002 * 299.99798 * 20 18 16 24 24 H 1.08999 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47561 * 300.00450 * 1 2 3 26 26 H 1.08999 * 109.46933 * 60.00904 * 1 2 3 27 27 H 1.08006 * 120.01351 * 0.02562 * 6 5 4 28 28 H 1.07999 * 119.98358 * 179.72216 * 7 6 5 29 29 H 1.07998 * 119.98478 * 180.02562 * 10 8 7 30 30 H 1.08004 * 120.01159 * 180.02562 * 11 10 8 31 31 H 0.97007 * 119.99525 * 359.97438 * 14 12 2 32 32 H 1.09006 * 109.46705 * 299.99930 * 15 14 12 33 33 H 1.09003 * 109.46815 * 59.99410 * 15 14 12 34 34 H 0.96996 * 120.00443 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1095 0.0623 2.3053 6 6 2.6761 -0.4941 3.4426 7 6 2.7749 0.2529 4.6005 8 6 2.3189 1.5600 4.6230 9 9 2.4210 2.2911 5.7544 10 6 1.7586 2.1186 3.4867 11 6 1.6534 1.3720 2.3291 12 6 2.0324 -0.7105 -1.2303 13 8 2.6530 -1.7468 -1.1212 14 7 1.7921 -0.1944 -2.4519 15 6 2.2800 -0.8854 -3.6481 16 6 1.8810 -0.1075 -4.8754 17 1 1.3197 0.8096 -4.7747 18 6 2.2325 -0.5667 -6.1271 19 7 2.9165 -1.6833 -6.2498 20 14 1.7385 0.3980 -7.6486 21 1 2.3308 1.7584 -7.5861 22 1 2.2330 -0.3025 -8.8611 23 1 0.2586 0.5046 -7.7082 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 3.0361 -1.5122 3.4241 28 1 3.2120 -0.1816 5.4874 29 1 1.4037 3.1384 3.5054 30 1 1.2167 1.8082 1.4428 31 1 1.2954 0.6342 -2.5392 32 1 3.3664 -0.9640 -3.6045 33 1 1.8450 -1.8838 -3.6937 34 1 3.1635 -2.0065 -7.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345174173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:54 Heat of formation + Delta-G solvation = -99.478109 kcal Electronic energy + Delta-G solvation = -19270.710920 eV Core-core repulsion = 15890.400146 eV Total energy + Delta-G solvation = -3380.310774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.99061 -40.57278 -38.84155 -37.13212 -34.31133 -32.75318 -31.92998 -31.11540 -29.37417 -27.34326 -24.70377 -23.52438 -22.76998 -21.85171 -19.80481 -18.57313 -17.76169 -17.44697 -16.45520 -15.85072 -15.68191 -15.52675 -15.31504 -14.81879 -14.56984 -14.17898 -13.92104 -13.67803 -13.31497 -13.08291 -12.83420 -12.49596 -12.32260 -12.07304 -11.82537 -11.69813 -11.07581 -11.05001 -10.94628 -10.86424 -10.36965 -9.48852 -9.42599 -9.14756 -8.80766 -8.24935 -8.01786 -6.22220 -4.30162 0.92296 1.01730 2.79679 3.12894 3.21534 3.26845 3.28087 3.37016 4.00041 4.11719 4.30050 4.46675 4.52409 4.68846 4.90322 4.93265 5.07820 5.13957 5.15219 5.31030 5.52156 5.57267 5.66942 5.87302 5.93564 5.99609 6.05278 6.48385 7.14115 7.22873 7.31597 7.42847 7.57657 7.89152 8.46578 8.68080 8.93247 9.36355 10.87838 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044090 B = 0.003248 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.911233 B = 8619.643684 C = 8923.178944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 H 0.095 0.905 4 O -0.279 6.279 5 C 0.130 3.870 6 C -0.123 4.123 7 C -0.112 4.112 8 C 0.051 3.949 9 F -0.144 7.144 10 C -0.111 4.111 11 C -0.187 4.187 12 C 0.503 3.497 13 O -0.531 6.531 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.391 0.609 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 7.765 18.168 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.003 3.997 3 H 0.113 0.887 4 O -0.191 6.191 5 C 0.083 3.917 6 C -0.142 4.142 7 C -0.131 4.131 8 C 0.031 3.969 9 F -0.123 7.123 10 C -0.130 4.130 11 C -0.206 4.206 12 C 0.285 3.715 13 O -0.408 6.408 14 N -0.355 5.355 15 C 0.131 3.869 16 C -0.585 4.585 17 H 0.081 0.919 18 C -0.139 4.139 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.224 0.776 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.837 6.679 18.066 19.640 hybrid contribution -0.527 1.238 -0.798 1.564 sum -4.364 7.917 17.268 19.492 Atomic orbital electron populations 1.22325 0.92768 1.04570 1.03580 1.22406 0.95730 0.97080 0.84474 0.88746 1.86278 1.80496 1.36756 1.15539 1.19166 0.94825 0.90334 0.87355 1.20341 1.02032 1.01634 0.90200 1.20947 1.00591 0.92545 0.98982 1.17568 1.05243 0.90766 0.83301 1.91479 1.94611 1.77073 1.49146 1.20920 0.99723 1.00788 0.91526 1.21231 1.05712 0.94048 0.99566 1.19870 0.81344 0.86034 0.84217 1.90711 1.40377 1.23366 1.86377 1.46383 1.55915 1.27163 1.06076 1.19170 0.95425 0.92970 0.79335 1.21155 1.37410 1.09286 0.90622 0.91851 1.24952 0.94677 0.95071 0.99237 1.69959 1.37119 1.20611 1.24447 0.86456 0.78915 0.79850 0.81580 1.20024 1.21027 1.20028 0.90549 0.91109 0.89867 0.83884 0.84122 0.84511 0.84101 0.77597 0.95303 0.95276 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.12 37.16 0.34 -1.61 16 2 C 0.06 0.89 2.64 -27.89 -0.07 0.82 16 3 H 0.09 1.08 6.32 -51.93 -0.33 0.75 16 4 O -0.28 -4.29 9.34 -39.44 -0.37 -4.66 16 5 C 0.13 1.63 6.60 -39.23 -0.26 1.37 16 6 C -0.12 -1.38 9.98 -39.44 -0.39 -1.78 16 7 C -0.11 -1.10 10.02 -39.54 -0.40 -1.50 16 8 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 9 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 10 C -0.11 -1.07 10.02 -39.53 -0.40 -1.47 16 11 C -0.19 -1.94 8.24 -39.44 -0.32 -2.27 16 12 C 0.50 9.85 7.18 -10.99 -0.08 9.77 16 13 O -0.53 -13.01 16.51 -14.31 -0.24 -13.24 16 14 N -0.71 -14.09 5.51 -61.47 -0.34 -14.43 16 15 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 16 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 17 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -25.58 13.29 55.43 0.74 -24.85 16 20 Si 0.91 20.33 29.54 -169.99 -5.02 15.30 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 26 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 27 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.21 5.42 -52.48 -0.28 0.92 16 31 H 0.39 6.43 8.10 -40.82 -0.33 6.10 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -32.24 303.19 -6.72 -38.96 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.78 Total: 2.89 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.32 Total: -3.00 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.40 Total: -39.27 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.60 Total: -17.90 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.24 -6.72 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345174173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.514 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds