Wall clock time and date at job start Mon Mar 30 2020 00:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47364 * 2 1 4 4 O 1.42903 * 109.47180 * 119.99474 * 2 1 3 5 5 C 1.35950 * 116.99970 * 275.15305 * 4 2 1 6 6 C 1.38706 * 120.03405 * 185.76057 * 5 4 2 7 7 C 1.38146 * 119.97074 * 180.28840 * 6 5 4 8 8 C 1.38454 * 120.03274 * 359.45398 * 7 6 5 9 9 F 1.35099 * 119.97241 * 180.26846 * 8 7 6 10 10 C 1.38459 * 120.05730 * 0.25089 * 8 7 6 11 11 C 1.38151 * 120.02931 * 0.02562 * 10 8 7 12 12 C 1.50696 * 109.47540 * 239.99309 * 2 1 3 13 13 O 1.21283 * 120.00323 * 245.00275 * 12 2 1 14 14 N 1.34773 * 120.00108 * 65.00309 * 12 2 1 15 15 C 1.46503 * 120.00443 * 180.02562 * 14 12 2 16 16 C 1.50695 * 109.47028 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99332 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00694 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99569 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47318 * 59.99945 * 20 18 16 22 22 H 1.48505 * 109.47131 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47002 * 299.99798 * 20 18 16 24 24 H 1.08999 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47561 * 300.00450 * 1 2 3 26 26 H 1.08999 * 109.46933 * 60.00904 * 1 2 3 27 27 H 1.08006 * 120.01351 * 0.02562 * 6 5 4 28 28 H 1.07999 * 119.98358 * 179.72216 * 7 6 5 29 29 H 1.07998 * 119.98478 * 180.02562 * 10 8 7 30 30 H 1.08004 * 120.01159 * 180.02562 * 11 10 8 31 31 H 0.97007 * 119.99525 * 359.97438 * 14 12 2 32 32 H 1.09006 * 109.46705 * 299.99930 * 15 14 12 33 33 H 1.09003 * 109.46815 * 59.99410 * 15 14 12 34 34 H 0.96996 * 120.00443 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1095 0.0623 2.3053 6 6 2.6761 -0.4941 3.4426 7 6 2.7749 0.2529 4.6005 8 6 2.3189 1.5600 4.6230 9 9 2.4210 2.2911 5.7544 10 6 1.7586 2.1186 3.4867 11 6 1.6534 1.3720 2.3291 12 6 2.0324 -0.7105 -1.2303 13 8 2.6530 -1.7468 -1.1212 14 7 1.7921 -0.1944 -2.4519 15 6 2.2800 -0.8854 -3.6481 16 6 1.8810 -0.1075 -4.8754 17 1 1.3197 0.8096 -4.7747 18 6 2.2325 -0.5667 -6.1271 19 7 2.9165 -1.6833 -6.2498 20 14 1.7385 0.3980 -7.6486 21 1 2.3308 1.7584 -7.5861 22 1 2.2330 -0.3025 -8.8611 23 1 0.2586 0.5046 -7.7082 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 3.0361 -1.5122 3.4241 28 1 3.2120 -0.1816 5.4874 29 1 1.4037 3.1384 3.5054 30 1 1.2167 1.8082 1.4428 31 1 1.2954 0.6342 -2.5392 32 1 3.3664 -0.9640 -3.6045 33 1 1.8450 -1.8838 -3.6937 34 1 3.1635 -2.0065 -7.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345174173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:54 Heat of formation + Delta-G solvation = -120.685201 kcal Electronic energy + Delta-G solvation = -19271.630528 eV Core-core repulsion = 15890.400146 eV Total energy + Delta-G solvation = -3381.230382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.81254 -41.65815 -40.25681 -38.18098 -36.20574 -34.53816 -33.14282 -32.00592 -30.25011 -29.24931 -25.97671 -24.71903 -24.01903 -23.02791 -21.38124 -19.50419 -19.24273 -18.37193 -17.93252 -17.10039 -16.99207 -16.82786 -16.50366 -16.20492 -15.72021 -15.67642 -15.05280 -14.74038 -14.35588 -14.14291 -14.11953 -13.99779 -13.65860 -13.32611 -13.16618 -12.95435 -12.74050 -12.66917 -12.23287 -11.98165 -11.78469 -11.52006 -10.79950 -10.77739 -10.18787 -9.92356 -9.14174 -8.28819 -6.45937 0.14682 0.18094 1.44601 1.48753 1.56490 1.57369 1.65808 2.37475 2.55460 2.71056 3.06456 3.31908 3.55230 3.72456 3.77930 3.84271 3.91072 4.14664 4.30886 4.48366 4.66493 4.71946 4.90635 5.08043 5.08697 5.13239 5.14775 5.21401 5.23146 5.42659 5.61457 5.70385 5.82419 6.28723 6.63447 6.80240 7.21697 7.38207 8.83181 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044090 B = 0.003248 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.911233 B = 8619.643684 C = 8923.178944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.075 3.925 3 H 0.130 0.870 4 O -0.311 6.311 5 C 0.105 3.895 6 C -0.136 4.136 7 C -0.109 4.109 8 C 0.041 3.959 9 F -0.147 7.147 10 C -0.106 4.106 11 C -0.182 4.182 12 C 0.497 3.503 13 O -0.590 6.590 14 N -0.695 5.695 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.089 0.911 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.261 1.261 22 H -0.288 1.288 23 H -0.260 1.260 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.413 0.587 32 H -0.011 1.011 33 H -0.010 1.010 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 10.829 18.667 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 H 0.147 0.853 4 O -0.224 6.224 5 C 0.060 3.940 6 C -0.154 4.154 7 C -0.127 4.127 8 C 0.022 3.978 9 F -0.126 7.126 10 C -0.125 4.125 11 C -0.200 4.200 12 C 0.283 3.717 13 O -0.470 6.470 14 N -0.346 5.346 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.107 0.893 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.214 1.214 23 H -0.185 1.185 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.160 0.840 28 H 0.179 0.821 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.249 0.751 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.482 9.797 18.606 21.731 hybrid contribution 0.021 0.256 -0.819 0.858 sum -5.461 10.053 17.788 21.149 Atomic orbital electron populations 1.22353 0.90094 1.04216 1.05971 1.22328 0.97381 0.97111 0.81572 0.85313 1.86225 1.81426 1.38237 1.16500 1.19420 0.96516 0.91437 0.86668 1.20485 1.02366 1.02012 0.90565 1.21131 1.00030 0.92414 0.99154 1.17799 1.05422 0.90985 0.83569 1.91475 1.94652 1.77115 1.49380 1.21206 0.98719 1.01830 0.90727 1.21426 1.05042 0.92950 1.00615 1.20948 0.79780 0.85355 0.85606 1.90679 1.42825 1.26157 1.87354 1.46033 1.55979 1.27617 1.05001 1.18602 0.92832 0.92056 0.82123 1.21582 1.37218 1.09940 0.90618 0.89302 1.26076 0.94364 0.95976 1.03188 1.70133 1.38739 1.22818 1.25355 0.85200 0.79146 0.78375 0.76457 1.18542 1.21404 1.18493 0.92356 0.88067 0.88019 0.83974 0.82147 0.81920 0.81890 0.75075 0.99347 0.99248 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.12 71.98 0.66 -2.67 16 2 C 0.08 2.01 2.64 29.85 0.08 2.09 16 3 H 0.13 2.52 6.32 -2.39 -0.02 2.51 16 4 O -0.31 -9.44 9.34 -73.99 -0.69 -10.13 16 5 C 0.10 2.49 6.60 22.49 0.15 2.64 16 6 C -0.14 -2.95 9.98 22.36 0.22 -2.72 16 7 C -0.11 -1.97 10.02 22.30 0.22 -1.75 16 8 C 0.04 0.77 7.30 22.37 0.16 0.94 16 9 F -0.15 -2.90 17.27 44.97 0.78 -2.13 16 10 C -0.11 -1.71 10.02 22.30 0.22 -1.49 16 11 C -0.18 -3.22 8.24 22.36 0.18 -3.03 16 12 C 0.50 19.77 7.18 87.66 0.63 20.40 16 13 O -0.59 -30.38 16.51 15.95 0.26 -30.12 16 14 N -0.69 -27.83 5.51 -466.79 -2.57 -30.40 16 15 C 0.27 14.25 5.43 85.63 0.46 14.72 16 16 C -0.56 -29.14 9.28 25.60 0.24 -28.90 16 17 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 18 C 0.00 0.20 5.46 84.66 0.46 0.66 16 19 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 20 Si 0.99 41.06 29.54 68.60 2.03 43.08 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 1.42 6.90 -2.39 -0.02 1.40 16 26 H 0.10 1.62 7.92 -2.39 -0.02 1.61 16 27 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.16 2.05 5.42 -2.91 -0.02 2.03 16 31 H 0.41 12.79 8.10 -92.70 -0.75 12.04 16 32 H -0.01 -0.70 8.14 -2.38 -0.02 -0.71 16 33 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -73.90 303.19 4.17 -69.73 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.38 Total: 14.29 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 3.69 Total: 0.89 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.29 Total: -85.62 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.43 Total: -40.24 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -73.90 4.17 -69.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345174173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.953 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds