Wall clock time and date at job start Mon Mar 30 2020 00:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47569 * 2 1 4 4 O 1.42904 * 109.47279 * 239.99449 * 2 1 3 5 5 C 1.35944 * 116.99674 * 84.82066 * 4 2 1 6 6 C 1.38710 * 120.03115 * 354.62961 * 5 4 2 7 7 C 1.38153 * 119.96553 * 179.97438 * 6 5 4 8 8 C 1.38453 * 120.03261 * 359.97438 * 7 6 5 9 9 F 1.35104 * 119.96549 * 179.97438 * 8 7 6 10 10 C 1.38452 * 120.06095 * 0.25773 * 8 7 6 11 11 C 1.38155 * 120.02945 * 359.49302 * 10 8 7 12 12 C 1.50700 * 109.47278 * 119.99763 * 2 1 3 13 13 O 1.21281 * 120.00551 * 119.99737 * 12 2 1 14 14 N 1.34775 * 119.99939 * 299.99807 * 12 2 1 15 15 C 1.46501 * 120.00203 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47225 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00066 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99968 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99985 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46985 * 89.99926 * 20 18 16 22 22 H 1.48497 * 109.46807 * 209.99574 * 20 18 16 23 23 H 1.48490 * 109.46982 * 329.99919 * 20 18 16 24 24 H 1.09004 * 109.47152 * 300.00407 * 1 2 3 25 25 H 1.09001 * 109.47594 * 60.00110 * 1 2 3 26 26 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.01485 * 359.97438 * 6 5 4 28 28 H 1.08002 * 119.98164 * 179.97438 * 7 6 5 29 29 H 1.07994 * 119.98375 * 179.72211 * 10 8 7 30 30 H 1.07998 * 120.01455 * 180.23103 * 11 10 8 31 31 H 0.97001 * 120.00219 * 359.97438 * 14 12 2 32 32 H 1.08998 * 109.47320 * 300.00078 * 15 14 12 33 33 H 1.09005 * 109.47234 * 59.99968 * 15 14 12 34 34 H 0.96998 * 120.00515 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.1089 0.0617 -2.3054 6 6 1.6545 1.3721 -2.3288 7 6 1.7599 2.1185 -3.4865 8 6 2.3193 1.5593 -4.6229 9 9 2.4213 2.2903 -5.7545 10 6 2.7690 0.2500 -4.6024 11 6 2.6695 -0.4970 -3.4445 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.1946 -0.9407 3.6508 16 6 1.6919 -0.2304 4.8812 17 1 1.0707 0.6475 4.7821 18 6 2.0250 -0.7015 6.1335 19 7 2.7810 -1.7708 6.2543 20 14 1.4013 0.1785 7.6587 21 1 0.0933 -0.3975 8.0624 22 1 2.3792 0.0081 8.7631 23 1 1.2354 1.6241 7.3630 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.2184 1.8085 -1.4424 28 1 1.4058 3.1386 -3.5052 29 1 3.2010 -0.1863 -5.4908 30 1 3.0237 -1.5171 -3.4277 31 1 1.1494 0.5391 2.5436 32 1 1.8309 -1.9682 3.6507 33 1 3.2847 -0.9411 3.6510 34 1 3.0150 -2.1024 7.1352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345174175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:57 Heat of formation + Delta-G solvation = -120.558568 kcal Electronic energy + Delta-G solvation = -19272.262625 eV Core-core repulsion = 15891.037734 eV Total energy + Delta-G solvation = -3381.224891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.81153 -41.65955 -40.25748 -38.18006 -36.21064 -34.55196 -33.13474 -32.00667 -30.25087 -29.22951 -25.96977 -24.73194 -24.01973 -23.03534 -21.36857 -19.50792 -19.24699 -18.37226 -17.93566 -17.10597 -17.00957 -16.80735 -16.50366 -16.20093 -15.71000 -15.68632 -15.04726 -14.73897 -14.35964 -14.14919 -14.11323 -14.00347 -13.65887 -13.33481 -13.16531 -12.93262 -12.73258 -12.70712 -12.21769 -11.98112 -11.78358 -11.49310 -10.81263 -10.77779 -10.18781 -9.92264 -9.14112 -8.29004 -6.45924 0.14679 0.18144 1.44627 1.47101 1.55509 1.58339 1.67745 2.37342 2.55483 2.70828 3.06466 3.31897 3.55197 3.72513 3.77453 3.83926 3.91681 4.14637 4.30863 4.48188 4.67107 4.72133 4.90638 5.08204 5.08789 5.13234 5.15113 5.21441 5.23149 5.42849 5.61557 5.70364 5.82495 6.28801 6.63677 6.80206 7.21732 7.38219 8.83237 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.046055 B = 0.003233 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.821099 B = 8659.851280 C = 8970.274019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 H 0.130 0.870 4 O -0.310 6.310 5 C 0.105 3.895 6 C -0.182 4.182 7 C -0.106 4.106 8 C 0.041 3.959 9 F -0.147 7.147 10 C -0.109 4.109 11 C -0.136 4.136 12 C 0.497 3.503 13 O -0.590 6.590 14 N -0.695 5.695 15 C 0.266 3.734 16 C -0.554 4.554 17 H 0.089 0.911 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.253 1.253 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.161 0.839 30 H 0.142 0.858 31 H 0.412 0.588 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 10.826 -18.692 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 H 0.147 0.853 4 O -0.224 6.224 5 C 0.060 3.940 6 C -0.201 4.201 7 C -0.125 4.125 8 C 0.022 3.978 9 F -0.126 7.126 10 C -0.127 4.127 11 C -0.154 4.154 12 C 0.283 3.717 13 O -0.470 6.470 14 N -0.346 5.346 15 C 0.143 3.857 16 C -0.592 4.592 17 H 0.107 0.893 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.176 1.176 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.181 0.819 28 H 0.181 0.819 29 H 0.179 0.821 30 H 0.160 0.840 31 H 0.249 0.751 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.445 9.837 -18.636 21.765 hybrid contribution -0.028 0.209 0.829 0.855 sum -5.473 10.045 -17.807 21.165 Atomic orbital electron populations 1.22366 0.90083 1.04263 1.05978 1.22328 0.97368 0.97126 0.81580 0.85301 1.86221 1.81427 1.38242 1.16483 1.19419 0.96513 0.91434 0.86651 1.21424 1.05060 0.92956 1.00611 1.21205 0.98697 1.01840 0.90741 1.17798 1.05459 0.90964 0.83566 1.91477 1.94649 1.77133 1.49367 1.21132 1.00047 0.92376 0.99167 1.20486 1.02429 1.01993 0.90522 1.20952 0.80398 0.84738 0.85616 1.90679 1.40212 1.28730 1.87418 1.46034 1.52075 1.31694 1.04807 1.18608 0.93069 0.91839 0.82145 1.21609 1.33320 1.13852 0.90435 0.89303 1.26075 0.94715 0.95619 1.03229 1.70139 1.37179 1.24447 1.25288 0.85146 0.77809 0.79289 0.76921 1.19648 1.21254 1.17619 0.87985 0.88097 0.92280 0.81902 0.81925 0.82143 0.83969 0.75073 0.99271 0.99308 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 9.06 71.98 0.65 -2.66 16 2 C 0.08 2.00 2.64 29.85 0.08 2.08 16 3 H 0.13 2.55 6.32 -2.39 -0.02 2.53 16 4 O -0.31 -9.43 9.33 -73.89 -0.69 -10.12 16 5 C 0.11 2.50 6.60 22.50 0.15 2.65 16 6 C -0.18 -3.23 8.24 22.36 0.18 -3.04 16 7 C -0.11 -1.71 10.02 22.30 0.22 -1.49 16 8 C 0.04 0.77 7.30 22.37 0.16 0.94 16 9 F -0.15 -2.91 17.27 44.97 0.78 -2.13 16 10 C -0.11 -1.97 10.02 22.30 0.22 -1.75 16 11 C -0.14 -2.95 9.99 22.36 0.22 -2.72 16 12 C 0.50 19.76 7.23 87.66 0.63 20.39 16 13 O -0.59 -30.38 16.50 16.00 0.26 -30.12 16 14 N -0.69 -27.80 5.44 -466.79 -2.54 -30.34 16 15 C 0.27 14.22 5.43 85.63 0.46 14.68 16 16 C -0.55 -29.04 9.28 25.60 0.24 -28.80 16 17 H 0.09 4.11 7.60 -2.91 -0.02 4.08 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 20 Si 0.99 41.08 29.54 68.60 2.03 43.10 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.29 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 24 H 0.10 1.60 7.57 -2.38 -0.02 1.58 16 25 H 0.10 1.40 6.90 -2.39 -0.02 1.39 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.16 2.06 5.42 -2.91 -0.02 2.04 16 28 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 29 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.41 12.79 7.74 -92.71 -0.72 12.07 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 34 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -73.90 302.40 4.23 -69.66 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.42 Total: 14.20 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 3.70 Total: 0.93 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.25 Total: -85.53 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.43 Total: -40.24 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -73.90 4.23 -69.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345174175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.895 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds