Wall clock time and date at job start Mon Mar 30 2020 00:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47276 * 2 1 4 4 C 1.50701 * 109.46985 * 120.00072 * 2 1 3 5 5 O 1.21280 * 120.00379 * 120.00324 * 4 2 1 6 6 N 1.34783 * 120.00085 * 299.99609 * 4 2 1 7 7 C 1.46492 * 120.00112 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47123 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.46917 * 180.02562 * 8 7 6 10 10 C 1.50710 * 109.47015 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99357 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00140 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99949 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99973 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47479 * 59.99797 * 14 12 10 16 16 H 1.48495 * 109.47300 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46897 * 300.00059 * 14 12 10 18 18 C 1.50697 * 109.47070 * 239.99752 * 2 1 3 19 19 C 1.38421 * 122.53935 * 119.99754 * 18 2 1 20 20 C 1.33388 * 114.92066 * 179.72463 * 19 18 2 21 21 S 1.75885 * 109.59458 * 0.27968 * 20 19 18 22 22 C 1.33395 * 122.53872 * 300.25814 * 18 2 1 23 23 H 1.08993 * 109.47394 * 60.00009 * 1 2 3 24 24 H 1.09006 * 109.47505 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47012 * 300.00262 * 1 2 3 26 26 H 0.96997 * 119.99389 * 0.02562 * 6 4 2 27 27 H 1.08995 * 109.47563 * 300.00500 * 7 6 4 28 28 H 1.09000 * 109.47045 * 60.00519 * 7 6 4 29 29 H 1.09006 * 109.46774 * 300.00061 * 8 7 6 30 30 H 1.08998 * 109.47097 * 59.99852 * 8 7 6 31 31 H 1.08996 * 109.47728 * 299.99752 * 9 8 7 32 32 H 1.09000 * 109.47348 * 60.00376 * 9 8 7 33 33 H 0.97001 * 120.00186 * 180.02562 * 13 12 10 34 34 H 1.08002 * 122.54201 * 0.02562 * 19 18 2 35 35 H 1.08004 * 125.20514 * 180.24987 * 20 19 18 36 36 H 1.07998 * 125.20353 * 359.97100 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.6849 -0.2193 4.9000 9 6 2.1959 -0.9399 6.1492 10 6 1.6935 -0.2295 7.3798 11 1 1.0716 0.6479 7.2805 12 6 2.0269 -0.7002 8.6320 13 7 2.7838 -1.7690 8.7527 14 14 1.4036 0.1799 10.1572 15 1 -0.0814 0.1789 10.1572 16 1 1.8996 -0.5193 11.3697 17 1 1.8976 1.5803 10.1571 18 6 2.0323 -0.7104 -1.2304 19 6 2.8305 -0.0890 -2.1752 20 6 3.1926 -0.8614 -3.2007 21 16 2.5015 -2.4666 -3.0030 22 6 1.7372 -1.9843 -1.4941 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.1488 0.5385 2.5435 27 1 1.8326 -1.9680 3.6510 28 1 3.2855 -0.9397 3.6506 29 1 2.0475 0.8087 4.9000 30 1 0.5949 -0.2201 4.8999 31 1 1.8337 -1.9679 6.1495 32 1 3.2859 -0.9387 6.1491 33 1 3.0181 -2.1004 9.6337 34 1 3.1409 0.9416 -2.0863 35 1 3.8146 -0.5487 -4.0265 36 1 1.1264 -2.6232 -0.8735 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348097944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:00 Heat of formation + Delta-G solvation = -27.013262 kcal Electronic energy + Delta-G solvation = -17242.307279 eV Core-core repulsion = 14431.351993 eV Total energy + Delta-G solvation = -2810.955286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09897 -37.87598 -35.34949 -33.62419 -32.98945 -31.04898 -28.89370 -26.78655 -25.45639 -23.66745 -22.40830 -20.69461 -19.93399 -18.68559 -17.89899 -16.87726 -16.35504 -15.72521 -15.32566 -14.82393 -14.44796 -14.30047 -13.72885 -13.53743 -13.14731 -12.85217 -12.50174 -12.37288 -12.25999 -11.93769 -11.82746 -11.69595 -11.47442 -10.88974 -10.82383 -10.73256 -10.62851 -9.87190 -9.79744 -9.35139 -9.13314 -8.85657 -8.75801 -8.48340 -8.37894 -6.02539 -4.05896 0.94462 1.57328 1.88985 2.54521 2.80410 3.31275 3.36132 3.37683 3.50452 4.43444 4.53262 4.69090 4.89387 5.04983 5.11623 5.21596 5.33088 5.47204 5.53698 5.56866 5.73254 5.77396 5.88151 5.92060 6.15743 6.26529 6.37479 6.49626 6.59158 6.83207 6.99747 7.62310 7.72580 7.75146 7.96025 8.36309 8.42468 9.00625 9.58299 11.08737 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.002864 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.193795 B = 9775.705604 C =10032.304341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 H 0.104 0.896 4 C 0.510 3.490 5 O -0.535 6.535 6 N -0.725 5.725 7 C 0.117 3.883 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.524 4.524 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.092 4.092 19 C -0.123 4.123 20 C -0.219 4.219 21 S 0.088 5.912 22 C -0.171 4.171 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.398 0.602 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.262 0.738 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 4.221 -23.666 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 H 0.122 0.878 4 C 0.295 3.705 5 O -0.411 6.411 6 N -0.376 5.376 7 C -0.006 4.006 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.562 4.562 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.104 4.104 19 C -0.154 4.154 20 C -0.354 4.354 21 S 0.351 5.649 22 C -0.307 4.307 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.231 0.769 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.051 2.014 -24.457 24.729 hybrid contribution -0.489 2.098 1.852 2.841 sum -3.540 4.112 -22.605 23.247 Atomic orbital electron populations 1.21796 0.92046 1.03061 1.02845 1.20001 0.97449 0.99935 0.90192 0.87836 1.20444 0.80605 0.84890 0.84548 1.90714 1.37532 1.26191 1.86682 1.46193 1.53402 1.32066 1.05975 1.21634 0.99227 0.96505 0.83229 1.21885 1.00153 0.99501 0.94304 1.19023 0.96657 0.95670 0.90008 1.21171 1.31681 1.12392 0.90946 0.92694 1.25031 0.95157 0.95059 0.99201 1.69955 1.36664 1.22966 1.23708 0.86638 0.79163 0.79746 0.82324 1.20236 1.21261 1.20239 1.18343 1.01103 0.94191 0.96788 1.20030 0.99921 1.01279 0.94183 1.25478 1.08571 0.96793 1.04606 1.84211 1.47477 1.13260 1.19923 1.25361 1.06345 0.98999 0.99987 0.91292 0.91918 0.91513 0.76856 0.91855 0.91846 0.92745 0.92739 0.96308 0.96303 0.92849 0.84352 0.82014 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.92 37.16 0.33 -0.82 16 2 C -0.05 -0.54 2.97 -92.93 -0.28 -0.82 16 3 H 0.10 0.87 8.03 -51.93 -0.42 0.45 16 4 C 0.51 7.36 7.06 -10.98 -0.08 7.29 16 5 O -0.53 -9.97 15.24 5.56 0.08 -9.88 16 6 N -0.73 -10.10 5.45 -60.30 -0.33 -10.43 16 7 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 8 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 14 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.09 -1.05 4.28 -106.25 -0.45 -1.51 16 19 C -0.12 -1.25 9.92 -41.21 -0.41 -1.66 16 20 C -0.22 -2.08 11.23 29.04 0.33 -1.76 16 21 S 0.09 0.90 23.34 -107.50 -2.51 -1.61 16 22 C -0.17 -2.03 9.27 29.04 0.27 -1.76 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.56 7.73 -51.93 -0.40 0.16 16 25 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 26 H 0.40 4.36 7.89 -40.82 -0.32 4.04 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.16 1.90 7.93 -52.49 -0.42 1.49 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -32.62 320.61 -8.51 -41.13 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.30 Total: 0.06 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.00 Total: -14.39 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.41 Total: -36.55 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.62 -8.51 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348097944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.115 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds