Wall clock time and date at job start Mon Mar 30 2020 00:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47276 * 2 1 4 4 C 1.50701 * 109.46985 * 120.00072 * 2 1 3 5 5 O 1.21280 * 120.00379 * 120.00324 * 4 2 1 6 6 N 1.34783 * 120.00085 * 299.99609 * 4 2 1 7 7 C 1.46492 * 120.00112 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47123 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.46917 * 180.02562 * 8 7 6 10 10 C 1.50710 * 109.47015 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99357 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00140 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99949 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99973 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47479 * 59.99797 * 14 12 10 16 16 H 1.48495 * 109.47300 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46897 * 300.00059 * 14 12 10 18 18 C 1.50697 * 109.47070 * 239.99752 * 2 1 3 19 19 C 1.38421 * 122.53935 * 119.99754 * 18 2 1 20 20 C 1.33388 * 114.92066 * 179.72463 * 19 18 2 21 21 S 1.75885 * 109.59458 * 0.27968 * 20 19 18 22 22 C 1.33395 * 122.53872 * 300.25814 * 18 2 1 23 23 H 1.08993 * 109.47394 * 60.00009 * 1 2 3 24 24 H 1.09006 * 109.47505 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47012 * 300.00262 * 1 2 3 26 26 H 0.96997 * 119.99389 * 0.02562 * 6 4 2 27 27 H 1.08995 * 109.47563 * 300.00500 * 7 6 4 28 28 H 1.09000 * 109.47045 * 60.00519 * 7 6 4 29 29 H 1.09006 * 109.46774 * 300.00061 * 8 7 6 30 30 H 1.08998 * 109.47097 * 59.99852 * 8 7 6 31 31 H 1.08996 * 109.47728 * 299.99752 * 9 8 7 32 32 H 1.09000 * 109.47348 * 60.00376 * 9 8 7 33 33 H 0.97001 * 120.00186 * 180.02562 * 13 12 10 34 34 H 1.08002 * 122.54201 * 0.02562 * 19 18 2 35 35 H 1.08004 * 125.20514 * 180.24987 * 20 19 18 36 36 H 1.07998 * 125.20353 * 359.97100 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.6849 -0.2193 4.9000 9 6 2.1959 -0.9399 6.1492 10 6 1.6935 -0.2295 7.3798 11 1 1.0716 0.6479 7.2805 12 6 2.0269 -0.7002 8.6320 13 7 2.7838 -1.7690 8.7527 14 14 1.4036 0.1799 10.1572 15 1 -0.0814 0.1789 10.1572 16 1 1.8996 -0.5193 11.3697 17 1 1.8976 1.5803 10.1571 18 6 2.0323 -0.7104 -1.2304 19 6 2.8305 -0.0890 -2.1752 20 6 3.1926 -0.8614 -3.2007 21 16 2.5015 -2.4666 -3.0030 22 6 1.7372 -1.9843 -1.4941 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.1488 0.5385 2.5435 27 1 1.8326 -1.9680 3.6510 28 1 3.2855 -0.9397 3.6506 29 1 2.0475 0.8087 4.9000 30 1 0.5949 -0.2201 4.8999 31 1 1.8337 -1.9679 6.1495 32 1 3.2859 -0.9387 6.1491 33 1 3.0181 -2.1004 9.6337 34 1 3.1409 0.9416 -2.0863 35 1 3.8146 -0.5487 -4.0265 36 1 1.1264 -2.6232 -0.8735 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348097944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:00 Heat of formation + Delta-G solvation = -47.482483 kcal Electronic energy + Delta-G solvation = -17243.194891 eV Core-core repulsion = 14431.351993 eV Total energy + Delta-G solvation = -2811.842898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18144 -38.81609 -36.88665 -35.23167 -34.19871 -32.72795 -29.74474 -28.52017 -26.30748 -25.21411 -23.59879 -22.30574 -21.12992 -19.57334 -18.72673 -18.52276 -17.81875 -16.97036 -16.65045 -16.45710 -15.74356 -15.53714 -14.88952 -14.50027 -14.24939 -13.99636 -13.78432 -13.60796 -13.52217 -13.23515 -13.14838 -12.72157 -12.56643 -12.53115 -12.39048 -12.32066 -11.66605 -11.61454 -11.54412 -11.24835 -10.71371 -10.55116 -10.06984 -9.64721 -9.29262 -8.19595 -6.31470 0.14607 0.78928 1.11245 1.41779 1.44912 1.52769 1.66343 1.71859 2.35377 2.44770 3.14103 3.71383 3.83404 4.09151 4.20203 4.20984 4.29920 4.35727 4.52870 4.55221 4.74196 4.88248 4.90364 4.94411 5.00532 5.16086 5.17267 5.26660 5.45229 5.50085 5.53332 5.59222 5.70323 5.83847 6.21763 6.61802 6.86260 7.29971 7.38378 8.92417 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.002864 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.193795 B = 9775.705604 C =10032.304341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 H 0.133 0.867 4 C 0.508 3.492 5 O -0.582 6.582 6 N -0.713 5.713 7 C 0.130 3.870 8 C -0.101 4.101 9 C 0.023 3.977 10 C -0.542 4.542 11 H 0.068 0.932 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.265 1.265 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.100 4.100 19 C -0.136 4.136 20 C -0.214 4.214 21 S 0.083 5.917 22 C -0.198 4.198 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.416 0.584 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 6.829 -24.461 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 H 0.151 0.849 4 C 0.295 3.705 5 O -0.462 6.462 6 N -0.365 5.365 7 C 0.006 3.994 8 C -0.139 4.139 9 C -0.014 4.014 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.792 3.208 15 H -0.189 1.189 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.113 4.113 19 C -0.166 4.166 20 C -0.349 4.349 21 S 0.347 5.653 22 C -0.334 4.334 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.253 0.747 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.206 0.794 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.135 4.661 -25.275 26.032 hybrid contribution -0.123 1.241 2.049 2.398 sum -4.259 5.902 -23.227 24.340 Atomic orbital electron populations 1.21814 0.90234 1.02810 1.04556 1.20051 0.98786 1.00462 0.87325 0.84906 1.21227 0.79507 0.84279 0.85468 1.90699 1.39699 1.28414 1.87350 1.45955 1.53394 1.32358 1.04822 1.21190 0.98091 0.95860 0.84233 1.21590 1.00793 0.99383 0.92101 1.18942 0.94889 0.94854 0.92749 1.21670 1.31607 1.12809 0.91907 0.91393 1.26043 0.95280 0.95801 1.03043 1.70111 1.38192 1.24795 1.24566 0.85459 0.79011 0.78703 0.77626 1.18942 1.21242 1.18947 1.18635 1.01128 0.94176 0.97343 1.20302 0.99805 1.02553 0.93941 1.25869 1.08051 0.95824 1.05160 1.84182 1.47531 1.14375 1.19211 1.25429 1.07431 0.99593 1.00933 0.89370 0.93212 0.89988 0.74682 0.93573 0.93597 0.91249 0.91223 0.99137 0.99142 0.92814 0.81940 0.79391 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.92 71.98 0.64 -1.28 16 2 C -0.04 -0.80 2.97 -12.29 -0.04 -0.83 16 3 H 0.13 1.73 8.03 -2.39 -0.02 1.71 16 4 C 0.51 14.23 7.06 87.66 0.62 14.84 16 5 O -0.58 -22.07 15.24 -3.03 -0.05 -22.11 16 6 N -0.71 -18.87 5.45 -463.07 -2.52 -21.40 16 7 C 0.13 4.60 5.67 86.38 0.49 5.09 16 8 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.54 -30.17 9.11 25.60 0.23 -29.93 16 11 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 13 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 14 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 C -0.10 -2.15 4.28 -20.92 -0.09 -2.24 16 19 C -0.14 -2.44 9.92 21.22 0.21 -2.23 16 20 C -0.21 -3.62 11.23 66.72 0.75 -2.87 16 21 S 0.08 1.67 23.34 -56.49 -1.32 0.35 16 22 C -0.20 -4.70 9.27 66.72 0.62 -4.08 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.84 7.73 -2.38 -0.02 0.82 16 25 H 0.08 0.90 7.56 -2.39 -0.02 0.88 16 26 H 0.42 7.95 7.89 -92.71 -0.73 7.22 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.15 3.74 7.93 -2.91 -0.02 3.72 16 Total: -1.00 -72.15 320.61 2.97 -69.18 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.33 Total: 11.11 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 4.21 Total: -25.61 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.24 Total: -78.57 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.35 kcal Total: -72.15 2.97 -69.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348097944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.699 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds