Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35958 * 116.99757 * 2 1 4 4 C 1.38655 * 120.06541 * 0.02562 * 3 2 1 5 5 C 1.38188 * 119.96847 * 179.70614 * 4 3 2 6 6 C 1.38260 * 120.09056 * 0.54617 * 5 4 3 7 7 C 1.50700 * 119.93193 * 179.72930 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72373 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00446 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99703 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00230 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46973 * 90.00368 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00151 * 16 14 12 19 19 H 1.48504 * 109.47027 * 330.00190 * 16 14 12 20 20 C 1.38250 * 120.12955 * 359.45171 * 6 5 4 21 21 C 1.38329 * 120.02904 * 0.27471 * 20 6 5 22 22 F 1.35103 * 120.04786 * 179.97438 * 21 20 6 23 23 H 1.08995 * 109.47115 * 300.00296 * 1 2 3 24 24 H 1.08999 * 109.47081 * 59.99987 * 1 2 3 25 25 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.01603 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.95179 * 180.29305 * 5 4 3 28 28 H 1.09004 * 109.47210 * 149.72666 * 7 6 5 29 29 H 1.08994 * 109.47551 * 29.72318 * 7 6 5 30 30 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 31 31 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 32 32 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 33 33 H 0.97000 * 119.99614 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.98667 * 180.24841 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6053 0.0067 6 6 3.3024 3.6776 0.0009 7 6 3.9850 5.0212 0.0014 8 6 4.2125 5.4696 -1.4192 9 8 3.8550 4.7675 -2.3414 10 7 4.8077 6.6536 -1.6651 11 6 5.0234 7.0922 -3.0461 12 6 5.7016 8.4379 -3.0456 13 1 5.9478 8.9183 -2.1101 14 6 6.0088 9.0556 -4.2394 15 7 5.7095 8.4705 -5.3786 16 14 6.8502 10.7234 -4.2388 17 1 8.3232 10.5347 -4.2433 18 1 6.4448 11.4828 -5.4488 19 1 6.4515 11.4785 -3.0238 20 6 4.0580 2.5199 0.0004 21 6 3.4333 1.2856 -0.0001 22 9 4.1713 0.1540 -0.0011 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2138 2.3201 0.0005 27 1 1.3342 4.5116 0.0119 28 1 4.9431 4.9417 0.5152 29 1 3.3563 5.7480 0.5156 30 1 5.0934 7.2152 -0.9276 31 1 5.6534 6.3684 -3.5630 32 1 4.0636 7.1688 -3.5571 33 1 5.9253 8.9052 -6.2185 34 1 5.1364 2.5790 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350897197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = -103.683555 kcal Electronic energy + Delta-G solvation = -19223.419989 eV Core-core repulsion = 15842.926854 eV Total energy + Delta-G solvation = -3380.493136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.73099 -40.18574 -38.95803 -37.41539 -34.18694 -32.44749 -31.98589 -30.76325 -28.55314 -27.42775 -26.07011 -22.83724 -22.80440 -21.49550 -19.68182 -18.40725 -17.19295 -16.99382 -16.74178 -16.21863 -15.63971 -15.21657 -15.07760 -14.89047 -14.69935 -14.37920 -14.27022 -13.76189 -13.06634 -12.94580 -12.35791 -12.29565 -12.14044 -11.96972 -11.63575 -11.41494 -11.19635 -11.13338 -10.97274 -10.88396 -10.32706 -9.41222 -9.14426 -8.91879 -8.74993 -8.12707 -7.89961 -6.17926 -4.25101 1.12858 1.19462 3.00057 3.23176 3.29270 3.31520 3.34770 3.46592 4.14960 4.21376 4.39846 4.59133 4.66219 4.83271 4.92043 5.06354 5.18135 5.20461 5.22602 5.41456 5.43958 5.57580 5.63814 5.86293 6.03673 6.09619 6.47949 6.57736 7.16700 7.29583 7.41769 7.50440 7.64887 7.95764 8.60660 8.76476 9.08637 9.41694 10.92256 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042642 B = 0.003266 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.467232 B = 8571.534197 C = 8659.763346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.088 3.912 4 C -0.180 4.180 5 C -0.075 4.075 6 C -0.061 4.061 7 C -0.103 4.103 8 C 0.497 3.503 9 O -0.548 6.548 10 N -0.713 5.713 11 C 0.249 3.751 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.102 4.102 21 C 0.070 3.930 22 F -0.135 7.135 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.391 0.609 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.845 -11.213 14.694 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.093 4.093 6 C -0.062 4.062 7 C -0.144 4.144 8 C 0.282 3.718 9 O -0.427 6.427 10 N -0.362 5.362 11 C 0.129 3.871 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.120 4.120 21 C 0.050 3.950 22 F -0.114 7.114 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.223 0.777 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.978 -11.913 13.787 20.313 hybrid contribution 0.486 1.145 0.124 1.250 sum -8.492 -10.768 13.911 19.534 Atomic orbital electron populations 1.23087 0.78162 1.04027 1.01521 1.86115 1.21551 1.25999 1.88991 1.18946 0.90772 0.85506 1.00575 1.21044 1.00074 0.91394 1.07309 1.20863 0.93847 0.97335 0.97285 1.19096 0.93224 0.93701 1.00190 1.20707 1.02425 0.94500 0.96723 1.20326 0.79049 0.82241 0.90229 1.90694 1.51355 1.54496 1.46131 1.46468 1.58977 1.18983 1.11754 1.19101 0.96961 0.94597 0.76461 1.21228 1.40566 1.03375 0.93039 0.91879 1.24962 0.95591 0.98270 0.95232 1.69978 1.46174 1.38597 0.97517 0.86414 0.79652 0.83122 0.77712 1.20451 1.21008 1.19736 1.20846 1.00989 0.89733 1.00476 1.16862 0.85882 0.82853 1.09422 1.91482 1.76470 1.49048 1.94386 0.92545 0.92384 0.88153 0.84597 0.85051 0.88151 0.88056 0.77664 0.95566 0.95563 0.92433 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.96 10.36 -19.61 -0.20 -4.16 16 3 C 0.09 1.19 6.69 -39.18 -0.26 0.93 16 4 C -0.18 -2.12 9.04 -39.45 -0.36 -2.48 16 5 C -0.08 -0.94 9.69 -39.59 -0.38 -1.32 16 6 C -0.06 -0.84 4.37 -104.61 -0.46 -1.30 16 7 C -0.10 -1.34 5.83 -29.03 -0.17 -1.51 16 8 C 0.50 9.49 7.82 -10.98 -0.09 9.40 16 9 O -0.55 -13.02 16.03 5.55 0.09 -12.93 16 10 N -0.71 -14.47 5.55 -61.47 -0.34 -14.82 16 11 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 12 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 13 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C -0.10 -1.43 9.67 -39.54 -0.38 -1.81 16 21 C 0.07 1.03 7.31 -39.30 -0.29 0.74 16 22 F -0.14 -2.10 17.11 2.25 0.04 -2.06 16 23 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 24 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.14 1.20 6.30 -52.49 -0.33 0.87 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 306.17 15.07 4.61 4.61 Total: -1.00 -33.94 306.17 -5.88 -39.81 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.95 Total: 2.06 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.84 Total: -2.88 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.40 Total: -40.10 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.11 Total: -17.09 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.94 -5.88 -39.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350897197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.869 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds