Wall clock time and date at job start Mon Mar 30 2020 00:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35958 * 116.99757 * 2 1 4 4 C 1.38655 * 120.06541 * 0.02562 * 3 2 1 5 5 C 1.38188 * 119.96847 * 179.70614 * 4 3 2 6 6 C 1.38260 * 120.09056 * 0.54617 * 5 4 3 7 7 C 1.50700 * 119.93193 * 179.72930 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72373 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00446 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99703 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00230 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46973 * 90.00368 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00151 * 16 14 12 19 19 H 1.48504 * 109.47027 * 330.00190 * 16 14 12 20 20 C 1.38250 * 120.12955 * 359.45171 * 6 5 4 21 21 C 1.38329 * 120.02904 * 0.27471 * 20 6 5 22 22 F 1.35103 * 120.04786 * 179.97438 * 21 20 6 23 23 H 1.08995 * 109.47115 * 300.00296 * 1 2 3 24 24 H 1.08999 * 109.47081 * 59.99987 * 1 2 3 25 25 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.01603 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.95179 * 180.29305 * 5 4 3 28 28 H 1.09004 * 109.47210 * 149.72666 * 7 6 5 29 29 H 1.08994 * 109.47551 * 29.72318 * 7 6 5 30 30 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 31 31 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 32 32 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 33 33 H 0.97000 * 119.99614 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.98667 * 180.24841 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6053 0.0067 6 6 3.3024 3.6776 0.0009 7 6 3.9850 5.0212 0.0014 8 6 4.2125 5.4696 -1.4192 9 8 3.8550 4.7675 -2.3414 10 7 4.8077 6.6536 -1.6651 11 6 5.0234 7.0922 -3.0461 12 6 5.7016 8.4379 -3.0456 13 1 5.9478 8.9183 -2.1101 14 6 6.0088 9.0556 -4.2394 15 7 5.7095 8.4705 -5.3786 16 14 6.8502 10.7234 -4.2388 17 1 8.3232 10.5347 -4.2433 18 1 6.4448 11.4828 -5.4488 19 1 6.4515 11.4785 -3.0238 20 6 4.0580 2.5199 0.0004 21 6 3.4333 1.2856 -0.0001 22 9 4.1713 0.1540 -0.0011 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2138 2.3201 0.0005 27 1 1.3342 4.5116 0.0119 28 1 4.9431 4.9417 0.5152 29 1 3.3563 5.7480 0.5156 30 1 5.0934 7.2152 -0.9276 31 1 5.6534 6.3684 -3.5630 32 1 4.0636 7.1688 -3.5571 33 1 5.9253 8.9052 -6.2185 34 1 5.1364 2.5790 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350897197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:29 Heat of formation + Delta-G solvation = -127.732441 kcal Electronic energy + Delta-G solvation = -19224.462827 eV Core-core repulsion = 15842.926854 eV Total energy + Delta-G solvation = -3381.535974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.85549 -41.20776 -40.36477 -38.49595 -36.08802 -34.33916 -33.17120 -31.73827 -29.88335 -28.71622 -27.28897 -24.66406 -23.80786 -22.70872 -21.27429 -19.36599 -18.90154 -17.99490 -17.86592 -17.47104 -17.10954 -16.96581 -16.19570 -16.06585 -16.02720 -15.79256 -15.20119 -14.94687 -14.60255 -14.33108 -13.97451 -13.81334 -13.24583 -13.12998 -12.91276 -12.75877 -12.60490 -12.51394 -12.20703 -12.08301 -12.00501 -11.46547 -10.78959 -10.75970 -9.93657 -9.78394 -9.14421 -8.27825 -6.44283 0.12447 0.18113 1.44463 1.46628 1.57843 1.83490 2.18140 2.30732 2.43433 2.85670 3.07280 3.19834 3.60712 3.73431 3.99298 4.20034 4.24011 4.37287 4.38330 4.48681 4.49778 4.68450 4.72914 4.88653 5.04646 5.12404 5.16923 5.26723 5.48012 5.51462 5.63958 5.73296 5.87376 6.27784 6.67827 6.96658 7.25614 7.56410 8.84341 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042642 B = 0.003266 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.467232 B = 8571.534197 C = 8659.763346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.083 3.917 4 C -0.177 4.177 5 C -0.076 4.076 6 C -0.080 4.080 7 C -0.085 4.085 8 C 0.495 3.505 9 O -0.600 6.600 10 N -0.708 5.708 11 C 0.266 3.734 12 C -0.554 4.554 13 H 0.086 0.914 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.984 3.016 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.253 1.253 20 C -0.110 4.110 21 C 0.036 3.964 22 F -0.148 7.148 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.168 0.832 27 H 0.155 0.845 28 H 0.131 0.869 29 H 0.141 0.859 30 H 0.411 0.589 31 H -0.016 1.016 32 H -0.013 1.013 33 H 0.268 0.732 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 -9.737 16.878 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.037 3.963 4 C -0.195 4.195 5 C -0.094 4.094 6 C -0.081 4.081 7 C -0.125 4.125 8 C 0.282 3.718 9 O -0.482 6.482 10 N -0.358 5.358 11 C 0.143 3.857 12 C -0.592 4.592 13 H 0.104 0.896 14 C -0.198 4.198 15 N -0.571 5.571 16 Si 0.807 3.193 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.177 1.177 20 C -0.129 4.129 21 C 0.017 3.983 22 F -0.127 7.127 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.185 0.815 27 H 0.172 0.828 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.247 0.753 31 H 0.002 0.998 32 H 0.005 0.995 33 H 0.077 0.923 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.626 -10.439 16.038 21.421 hybrid contribution 0.582 0.566 -0.560 0.986 sum -9.044 -9.873 15.478 20.466 Atomic orbital electron populations 1.23443 0.75674 1.05926 1.02749 1.86094 1.24190 1.25845 1.88797 1.19152 0.90608 0.86554 1.00019 1.21394 1.01593 0.90477 1.06060 1.21248 0.93702 0.98538 0.95946 1.19281 0.93983 0.93702 1.01153 1.20688 1.04925 0.94786 0.92066 1.21443 0.76982 0.80786 0.92541 1.90674 1.53133 1.55741 1.48650 1.46191 1.59585 1.20125 1.09903 1.18509 0.94031 0.94012 0.79181 1.21647 1.40083 1.03375 0.94091 0.89591 1.26081 0.96179 1.02798 0.94698 1.70146 1.47733 1.40816 0.98442 0.85165 0.78336 0.77535 0.78231 1.19752 1.21132 1.17676 1.21021 1.01537 0.89909 1.00440 1.17219 0.86826 0.82845 1.11430 1.91436 1.76865 1.49672 1.94700 0.90626 0.91698 0.86130 0.81475 0.82760 0.85068 0.84144 0.75333 0.99843 0.99517 0.92334 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.23 10.36 -93.08 -0.96 -9.19 16 3 C 0.08 2.20 6.69 22.53 0.15 2.35 16 4 C -0.18 -3.81 9.04 22.36 0.20 -3.61 16 5 C -0.08 -1.73 9.69 22.26 0.22 -1.52 16 6 C -0.08 -2.07 4.37 -19.86 -0.09 -2.16 16 7 C -0.09 -1.97 5.83 29.10 0.17 -1.80 16 8 C 0.49 18.55 7.82 87.66 0.69 19.23 16 9 O -0.60 -29.15 16.03 -3.04 -0.05 -29.20 16 10 N -0.71 -28.35 5.55 -466.79 -2.59 -30.94 16 11 C 0.27 14.38 5.43 85.63 0.46 14.84 16 12 C -0.55 -29.63 9.28 25.60 0.24 -29.40 16 13 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 16 Si 0.98 41.83 29.54 68.60 2.03 43.86 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 18 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 20 C -0.11 -3.08 9.67 22.29 0.22 -2.86 16 21 C 0.04 1.09 7.31 22.45 0.16 1.26 16 22 F -0.15 -4.76 17.11 44.97 0.77 -3.99 16 23 H 0.08 0.72 7.66 -2.39 -0.02 0.71 16 24 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 25 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.17 2.41 6.30 -2.91 -0.02 2.39 16 27 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.13 2.27 8.08 -2.38 -0.02 2.25 16 29 H 0.14 2.19 8.08 -2.39 -0.02 2.17 16 30 H 0.41 13.04 8.32 -92.71 -0.77 12.27 16 31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -77.56 306.17 3.83 -73.73 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.36 Total: 13.45 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 3.99 Total: -1.77 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.30 Total: -86.89 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.01 Total: -38.39 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.77 Total: -3.99 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -77.56 3.83 -73.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350897197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.006 kcal (2) G-P(sol) polarization free energy of solvation -77.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds