Wall clock time and date at job start Mon Mar 30 2020 00:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46972 * 2 1 4 4 O 1.42900 * 109.46907 * 119.99570 * 2 1 3 5 5 C 1.35895 * 116.99986 * 275.04217 * 4 2 1 6 6 C 1.38768 * 120.04733 * 5.44569 * 5 4 2 7 7 C 1.38128 * 119.99620 * 180.02562 * 6 5 4 8 8 C 1.38245 * 120.08381 * 0.27397 * 7 6 5 9 9 C 1.38476 * 120.08134 * 359.44723 * 8 7 6 10 10 F 1.35107 * 119.99959 * 180.27646 * 9 8 7 11 11 C 1.38384 * 120.00458 * 0.55228 * 9 8 7 12 12 C 1.50693 * 109.47362 * 239.99849 * 2 1 3 13 13 O 1.21281 * 120.00048 * 245.00465 * 12 2 1 14 14 N 1.34776 * 119.99830 * 64.99600 * 12 2 1 15 15 C 1.46508 * 120.00052 * 179.97438 * 14 12 2 16 16 C 1.50690 * 109.47608 * 180.02562 * 15 14 12 17 17 H 1.08009 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00498 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00072 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00316 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46878 * 89.99774 * 20 18 16 22 22 H 1.48503 * 109.47232 * 209.99848 * 20 18 16 23 23 H 1.48500 * 109.47179 * 330.00146 * 20 18 16 24 24 H 1.09002 * 109.47396 * 60.00248 * 1 2 3 25 25 H 1.09001 * 109.47418 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47771 * 300.00154 * 1 2 3 27 27 H 1.08002 * 119.99778 * 359.97438 * 6 5 4 28 28 H 1.07998 * 119.95902 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.96248 * 179.70106 * 8 7 6 30 30 H 1.08011 * 120.04025 * 179.74720 * 11 9 8 31 31 H 0.96995 * 120.00803 * 0.02562 * 14 12 2 32 32 H 1.09003 * 109.47066 * 300.00741 * 15 14 12 33 33 H 1.09001 * 109.46601 * 60.00139 * 15 14 12 34 34 H 0.97003 * 120.00398 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1116 0.0625 2.3043 6 6 1.6583 1.3738 2.3278 7 6 1.7663 2.1212 3.4844 8 6 2.3309 1.5664 4.6178 9 6 2.7791 0.2563 4.5998 10 9 3.3255 -0.2861 5.7101 11 6 2.6726 -0.4957 3.4430 12 6 2.0324 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7919 -0.1942 -2.4519 15 6 2.2808 -0.8845 -3.6481 16 6 1.8825 -0.1062 -4.8754 17 1 1.3209 0.8109 -4.7746 18 6 2.2340 -0.5651 -6.1271 19 7 2.9174 -1.6821 -6.2499 20 14 1.7397 0.3995 -7.6485 21 1 2.8049 1.3792 -7.9812 22 1 1.5529 -0.5346 -8.7878 23 1 0.4684 1.1206 -7.3860 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.2218 1.8103 1.4416 28 1 1.4137 3.1419 3.5019 29 1 2.4187 2.1541 5.5197 30 1 3.0257 -1.5163 3.4271 31 1 1.2958 0.6347 -2.5392 32 1 3.3671 -0.9624 -3.6042 33 1 1.8466 -1.8833 -3.6941 34 1 3.1644 -2.0052 -7.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353965143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:00 Heat of formation + Delta-G solvation = -99.398803 kcal Electronic energy + Delta-G solvation = -19304.688031 eV Core-core repulsion = 15924.380696 eV Total energy + Delta-G solvation = -3380.307335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.10712 -40.59015 -38.83945 -37.17694 -34.31487 -32.77720 -31.93922 -30.60120 -29.88242 -27.34246 -24.75450 -23.24381 -22.97994 -21.84884 -19.80598 -18.72776 -17.74787 -16.59282 -16.39376 -16.32531 -15.92118 -15.60137 -15.41038 -15.06212 -14.60036 -14.20004 -14.00507 -13.77298 -13.22558 -13.02307 -12.63086 -12.51867 -12.09608 -11.97769 -11.85238 -11.72636 -11.22830 -11.06352 -11.02076 -10.90419 -10.37013 -9.47372 -9.16869 -9.11292 -8.81300 -8.46099 -8.02037 -6.22383 -4.30232 0.89821 1.07480 2.70450 3.12531 3.20516 3.26882 3.28975 3.37451 3.92833 4.17785 4.30043 4.52733 4.63201 4.76188 4.83236 4.91564 5.02833 5.13951 5.16004 5.21538 5.51839 5.55811 5.71524 5.85448 5.96782 6.03777 6.08370 6.48740 7.12493 7.22319 7.30773 7.42811 7.57636 7.89008 8.46344 8.68030 8.93067 9.36346 10.87724 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044610 B = 0.003298 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.511108 B = 8488.574146 C = 8803.995854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 H 0.097 0.903 4 O -0.278 6.278 5 C 0.167 3.833 6 C -0.225 4.225 7 C -0.050 4.050 8 C -0.198 4.198 9 C 0.138 3.862 10 F -0.136 7.136 11 C -0.190 4.190 12 C 0.503 3.497 13 O -0.531 6.531 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.391 0.609 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 9.149 18.171 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.114 0.886 4 O -0.189 6.189 5 C 0.120 3.880 6 C -0.243 4.243 7 C -0.068 4.068 8 C -0.217 4.217 9 C 0.119 3.881 10 F -0.114 7.114 11 C -0.210 4.210 12 C 0.285 3.715 13 O -0.408 6.408 14 N -0.355 5.355 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.224 0.776 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.314 8.009 18.070 20.230 hybrid contribution -0.405 0.940 -0.790 1.293 sum -4.718 8.949 17.279 20.023 Atomic orbital electron populations 1.22326 0.92672 1.04590 1.03641 1.22429 0.95792 0.97138 0.84274 0.88580 1.86257 1.80206 1.36851 1.15617 1.18734 0.92701 0.89927 0.86591 1.21436 1.07907 0.94346 1.00651 1.20767 0.95289 0.99518 0.91197 1.21014 1.05622 0.94308 1.00790 1.17278 0.96413 0.91951 0.82482 1.91513 1.83207 1.86198 1.50517 1.20298 1.07279 1.02601 0.90809 1.19864 0.81365 0.86047 0.84218 1.90715 1.40354 1.23355 1.86365 1.46376 1.55920 1.27159 1.06047 1.19177 0.95428 0.92998 0.79344 1.21186 1.37343 1.09256 0.90604 0.91802 1.24953 0.94706 0.95058 0.99253 1.69971 1.37230 1.20574 1.24339 0.86396 0.78914 0.79566 0.81918 1.20422 1.20963 1.19715 0.89811 0.90557 0.91035 0.84381 0.84670 0.84735 0.83712 0.77585 0.95304 0.95254 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.12 37.16 0.34 -1.61 16 2 C 0.06 0.90 2.63 -27.89 -0.07 0.83 16 3 H 0.10 1.10 6.31 -51.93 -0.33 0.77 16 4 O -0.28 -4.38 9.34 -39.27 -0.37 -4.74 16 5 C 0.17 2.18 6.60 -39.23 -0.26 1.92 16 6 C -0.22 -2.29 8.24 -39.43 -0.32 -2.61 16 7 C -0.05 -0.42 10.04 -39.62 -0.40 -0.82 16 8 C -0.20 -1.84 10.02 -39.49 -0.40 -2.24 16 9 C 0.14 1.57 7.30 -39.44 -0.29 1.28 16 10 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 11 C -0.19 -2.39 9.97 -39.37 -0.39 -2.79 16 12 C 0.50 9.89 7.18 -10.99 -0.08 9.82 16 13 O -0.53 -13.10 16.51 -14.30 -0.24 -13.34 16 14 N -0.70 -14.09 5.51 -61.47 -0.34 -14.43 16 15 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 16 C -0.55 -14.32 9.28 -34.45 -0.32 -14.64 16 17 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.60 13.29 55.43 0.74 -24.86 16 20 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.64 6.91 -51.93 -0.36 0.28 16 27 H 0.14 1.15 5.43 -52.49 -0.28 0.87 16 28 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 30 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.39 6.42 8.10 -40.82 -0.33 6.09 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -32.35 303.22 -6.72 -39.07 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.78 Total: 2.78 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.32 Total: -2.80 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.40 Total: -39.29 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.60 Total: -18.08 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.35 -6.72 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353965143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.328 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds