Wall clock time and date at job start Mon Mar 30 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46972 * 2 1 4 4 O 1.42900 * 109.46907 * 119.99570 * 2 1 3 5 5 C 1.35895 * 116.99986 * 275.04217 * 4 2 1 6 6 C 1.38768 * 120.04733 * 5.44569 * 5 4 2 7 7 C 1.38128 * 119.99620 * 180.02562 * 6 5 4 8 8 C 1.38245 * 120.08381 * 0.27397 * 7 6 5 9 9 C 1.38476 * 120.08134 * 359.44723 * 8 7 6 10 10 F 1.35107 * 119.99959 * 180.27646 * 9 8 7 11 11 C 1.38384 * 120.00458 * 0.55228 * 9 8 7 12 12 C 1.50693 * 109.47362 * 239.99849 * 2 1 3 13 13 O 1.21281 * 120.00048 * 245.00465 * 12 2 1 14 14 N 1.34776 * 119.99830 * 64.99600 * 12 2 1 15 15 C 1.46508 * 120.00052 * 179.97438 * 14 12 2 16 16 C 1.50690 * 109.47608 * 180.02562 * 15 14 12 17 17 H 1.08009 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00498 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00072 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00316 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46878 * 89.99774 * 20 18 16 22 22 H 1.48503 * 109.47232 * 209.99848 * 20 18 16 23 23 H 1.48500 * 109.47179 * 330.00146 * 20 18 16 24 24 H 1.09002 * 109.47396 * 60.00248 * 1 2 3 25 25 H 1.09001 * 109.47418 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47771 * 300.00154 * 1 2 3 27 27 H 1.08002 * 119.99778 * 359.97438 * 6 5 4 28 28 H 1.07998 * 119.95902 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.96248 * 179.70106 * 8 7 6 30 30 H 1.08011 * 120.04025 * 179.74720 * 11 9 8 31 31 H 0.96995 * 120.00803 * 0.02562 * 14 12 2 32 32 H 1.09003 * 109.47066 * 300.00741 * 15 14 12 33 33 H 1.09001 * 109.46601 * 60.00139 * 15 14 12 34 34 H 0.97003 * 120.00398 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1116 0.0625 2.3043 6 6 1.6583 1.3738 2.3278 7 6 1.7663 2.1212 3.4844 8 6 2.3309 1.5664 4.6178 9 6 2.7791 0.2563 4.5998 10 9 3.3255 -0.2861 5.7101 11 6 2.6726 -0.4957 3.4430 12 6 2.0324 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7919 -0.1942 -2.4519 15 6 2.2808 -0.8845 -3.6481 16 6 1.8825 -0.1062 -4.8754 17 1 1.3209 0.8109 -4.7746 18 6 2.2340 -0.5651 -6.1271 19 7 2.9174 -1.6821 -6.2499 20 14 1.7397 0.3995 -7.6485 21 1 2.8049 1.3792 -7.9812 22 1 1.5529 -0.5346 -8.7878 23 1 0.4684 1.1206 -7.3860 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.2218 1.8103 1.4416 28 1 1.4137 3.1419 3.5019 29 1 2.4187 2.1541 5.5197 30 1 3.0257 -1.5163 3.4271 31 1 1.2958 0.6347 -2.5392 32 1 3.3671 -0.9624 -3.6042 33 1 1.8466 -1.8833 -3.6941 34 1 3.1644 -2.0052 -7.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353965143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:59 Heat of formation + Delta-G solvation = -121.075183 kcal Electronic energy + Delta-G solvation = -19305.627989 eV Core-core repulsion = 15924.380696 eV Total energy + Delta-G solvation = -3381.247293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.98212 -41.68637 -40.26441 -38.21763 -36.21806 -34.55078 -33.19700 -31.49755 -30.73250 -29.25477 -26.02248 -24.64757 -23.96942 -23.10928 -21.38298 -19.67904 -19.26328 -17.96600 -17.46645 -17.34831 -17.02648 -16.89272 -16.69382 -16.47464 -16.12067 -15.69531 -15.11988 -14.71648 -14.61157 -14.15859 -14.01233 -13.93522 -13.49299 -13.29030 -12.94176 -12.90109 -12.71253 -12.58545 -12.22242 -12.13532 -11.96586 -11.49626 -10.81545 -10.79412 -9.94429 -9.92703 -9.34297 -8.29093 -6.46216 0.09050 0.25969 1.44447 1.47300 1.55882 1.56400 1.60627 2.36524 2.57352 2.64263 3.06401 3.34458 3.55550 3.75779 3.80968 3.88003 4.00488 4.07885 4.23699 4.40712 4.65671 4.69327 4.99854 5.06669 5.08276 5.13348 5.20613 5.22466 5.32744 5.42098 5.61011 5.71172 5.82028 6.25616 6.63308 6.79348 7.21414 7.37661 8.83184 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044610 B = 0.003298 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.511108 B = 8488.574146 C = 8803.995854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 H 0.134 0.866 4 O -0.314 6.314 5 C 0.141 3.859 6 C -0.218 4.218 7 C -0.038 4.038 8 C -0.188 4.188 9 C 0.123 3.877 10 F -0.143 7.143 11 C -0.213 4.213 12 C 0.496 3.504 13 O -0.591 6.591 14 N -0.693 5.693 15 C 0.266 3.734 16 C -0.554 4.554 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.252 1.252 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.163 0.837 28 H 0.178 0.822 29 H 0.162 0.838 30 H 0.128 0.872 31 H 0.413 0.587 32 H -0.012 1.012 33 H -0.011 1.011 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 13.247 18.687 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 H 0.151 0.849 4 O -0.227 6.227 5 C 0.096 3.904 6 C -0.237 4.237 7 C -0.056 4.056 8 C -0.207 4.207 9 C 0.103 3.897 10 F -0.122 7.122 11 C -0.233 4.233 12 C 0.282 3.718 13 O -0.472 6.472 14 N -0.345 5.345 15 C 0.143 3.857 16 C -0.592 4.592 17 H 0.108 0.892 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.809 3.191 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.175 1.175 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.180 0.820 28 H 0.195 0.805 29 H 0.179 0.821 30 H 0.146 0.854 31 H 0.250 0.750 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.333 12.160 18.627 23.129 hybrid contribution 0.256 -0.353 -0.823 0.931 sum -6.077 11.808 17.804 22.211 Atomic orbital electron populations 1.22360 0.89897 1.04170 1.06168 1.22369 0.97501 0.97205 0.81219 0.84921 1.86196 1.81255 1.38548 1.16696 1.18925 0.94605 0.91315 0.85602 1.21742 1.06823 0.92838 1.02270 1.21256 0.93560 1.00966 0.89799 1.21415 1.03869 0.93166 1.02262 1.17482 0.97320 0.92961 0.81893 1.91491 1.83474 1.86523 1.50707 1.20358 1.08485 1.02499 0.91955 1.20969 0.79779 0.85355 0.85671 1.90683 1.42901 1.26255 1.87375 1.46014 1.55945 1.27611 1.04919 1.18613 0.92813 0.92087 0.82177 1.21606 1.37137 1.09889 0.90544 0.89202 1.26090 0.94397 0.95970 1.03239 1.70145 1.38857 1.22820 1.25290 0.85135 0.79345 0.77814 0.76792 1.19665 1.21284 1.17517 0.87815 0.92554 0.87830 0.81955 0.80474 0.82080 0.85368 0.74990 0.99405 0.99286 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 9.12 71.98 0.66 -2.66 16 2 C 0.08 2.05 2.63 29.85 0.08 2.13 16 3 H 0.13 2.57 6.31 -2.39 -0.02 2.55 16 4 O -0.31 -9.97 9.34 -73.37 -0.69 -10.65 16 5 C 0.14 3.55 6.60 22.50 0.15 3.69 16 6 C -0.22 -3.63 8.24 22.37 0.18 -3.44 16 7 C -0.04 -0.47 10.04 22.25 0.22 -0.25 16 8 C -0.19 -2.87 10.02 22.33 0.22 -2.64 16 9 C 0.12 2.68 7.30 22.36 0.16 2.84 16 10 F -0.14 -3.33 17.27 44.97 0.78 -2.56 16 11 C -0.21 -5.50 9.97 22.41 0.22 -5.28 16 12 C 0.50 19.96 7.18 87.65 0.63 20.59 16 13 O -0.59 -31.01 16.51 15.96 0.26 -30.75 16 14 N -0.69 -27.84 5.51 -466.79 -2.57 -30.41 16 15 C 0.27 14.26 5.43 85.63 0.46 14.73 16 16 C -0.55 -29.03 9.28 25.60 0.24 -28.79 16 17 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 18 C 0.00 0.14 5.46 84.65 0.46 0.60 16 19 N -0.93 -55.68 13.29 21.44 0.28 -55.39 16 20 Si 0.99 41.06 29.54 68.60 2.03 43.08 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 22 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 24 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.10 1.41 6.91 -2.39 -0.02 1.39 16 27 H 0.16 1.83 5.43 -2.91 -0.02 1.81 16 28 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 30 H 0.13 3.53 8.06 -2.90 -0.02 3.51 16 31 H 0.41 12.74 8.10 -92.71 -0.75 11.99 16 32 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -76.32 303.22 4.17 -72.15 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.38 Total: 13.00 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 3.70 Total: 1.53 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.29 Total: -85.80 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.42 Total: -41.40 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -76.32 4.17 -72.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353965143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.928 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds