Wall clock time and date at job start Mon Mar 30 2020 00:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47275 * 2 1 4 4 O 1.42900 * 109.47387 * 239.99315 * 2 1 3 5 5 C 1.35902 * 116.99440 * 84.96086 * 4 2 1 6 6 C 1.38761 * 120.04415 * 354.55527 * 5 4 2 7 7 C 1.38133 * 119.99739 * 179.97438 * 6 5 4 8 8 C 1.38251 * 120.07838 * 359.97438 * 7 6 5 9 9 C 1.38475 * 120.08327 * 0.04516 * 8 7 6 10 10 F 1.35107 * 119.99845 * 179.97438 * 9 8 7 11 11 C 1.38382 * 120.00799 * 359.70118 * 9 8 7 12 12 C 1.50707 * 109.47096 * 119.99639 * 2 1 3 13 13 O 1.21282 * 119.99822 * 114.99873 * 12 2 1 14 14 N 1.34772 * 119.99792 * 295.00173 * 12 2 1 15 15 C 1.46503 * 119.99931 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.47196 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00217 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99953 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47113 * 59.99874 * 20 18 16 22 22 H 1.48499 * 109.47090 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47080 * 300.00061 * 20 18 16 24 24 H 1.08996 * 109.47265 * 299.99888 * 1 2 3 25 25 H 1.09005 * 109.46875 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47243 * 60.00440 * 1 2 3 27 27 H 1.07999 * 120.00366 * 359.97438 * 6 5 4 28 28 H 1.07995 * 119.96445 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.96059 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.04485 * 180.27337 * 11 9 8 31 31 H 0.97004 * 120.00546 * 359.97438 * 14 12 2 32 32 H 1.08999 * 109.47555 * 300.00761 * 15 14 12 33 33 H 1.09009 * 109.46678 * 60.00282 * 15 14 12 34 34 H 0.96997 * 119.99674 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1118 0.0622 -2.3043 6 6 1.6584 1.3735 -2.3278 7 6 1.7665 2.1209 -3.4845 8 6 2.3265 1.5643 -4.6193 9 6 2.7796 0.2559 -4.5996 10 9 3.3261 -0.2865 -5.7098 11 6 2.6779 -0.4944 -3.4413 12 6 2.0323 -0.7104 1.2306 13 8 2.6530 -1.7467 1.1216 14 7 1.7919 -0.1941 2.4520 15 6 2.2797 -0.8849 3.6483 16 6 1.8816 -0.1061 4.8755 17 1 1.3209 0.8114 4.7746 18 6 2.2332 -0.5650 6.1273 19 7 2.9164 -1.6820 6.2502 20 14 1.7392 0.4000 7.6486 21 1 0.2591 0.5065 7.7082 22 1 2.2338 -0.3002 8.8611 23 1 2.3312 1.7603 7.5858 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.2211 1.8097 -1.4419 28 1 1.4139 3.1415 -3.5021 29 1 2.4104 2.1505 -5.5225 30 1 3.0351 -1.5134 -3.4239 31 1 1.2958 0.6350 2.5392 32 1 1.8448 -1.8833 3.6941 33 1 3.3661 -0.9634 3.6048 34 1 3.1635 -2.0049 7.1309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353965148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:03 Heat of formation + Delta-G solvation = -99.365647 kcal Electronic energy + Delta-G solvation = -19304.572009 eV Core-core repulsion = 15924.266112 eV Total energy + Delta-G solvation = -3380.305897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.10692 -40.58927 -38.83882 -37.17614 -34.31388 -32.77611 -31.93870 -30.60119 -29.88234 -27.34113 -24.75322 -23.24356 -22.97914 -21.84801 -19.80569 -18.72730 -17.74729 -16.59313 -16.39246 -16.32404 -15.92086 -15.59857 -15.41049 -15.06273 -14.60153 -14.19964 -14.00629 -13.77465 -13.22587 -13.02389 -12.63037 -12.51685 -12.08882 -11.97609 -11.85059 -11.72779 -11.22542 -11.08127 -11.01330 -10.89588 -10.36993 -9.48814 -9.16803 -9.11278 -8.80800 -8.46126 -8.01969 -6.22169 -4.30117 0.89820 1.07447 2.70542 3.12592 3.21510 3.26754 3.28063 3.37443 3.92820 4.17796 4.30161 4.52769 4.63228 4.76186 4.83240 4.91597 5.02860 5.14019 5.15994 5.21547 5.51813 5.55839 5.71540 5.85453 5.96780 6.03786 6.08362 6.48739 7.12489 7.22337 7.30728 7.42891 7.57521 7.89200 8.46352 8.67999 8.93056 9.36371 10.87912 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044615 B = 0.003298 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.436562 B = 8488.493230 C = 8804.196975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 H 0.097 0.903 4 O -0.278 6.278 5 C 0.167 3.833 6 C -0.225 4.225 7 C -0.050 4.050 8 C -0.198 4.198 9 C 0.138 3.862 10 F -0.136 7.136 11 C -0.190 4.190 12 C 0.503 3.497 13 O -0.531 6.531 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.547 4.547 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.391 0.609 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 9.143 -18.161 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.114 0.886 4 O -0.189 6.189 5 C 0.120 3.880 6 C -0.243 4.243 7 C -0.068 4.068 8 C -0.217 4.217 9 C 0.119 3.881 10 F -0.114 7.114 11 C -0.210 4.210 12 C 0.285 3.715 13 O -0.408 6.408 14 N -0.355 5.355 15 C 0.131 3.869 16 C -0.585 4.585 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.224 0.776 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.298 8.001 -18.057 20.213 hybrid contribution -0.419 0.945 0.786 1.298 sum -4.717 8.946 -17.271 20.014 Atomic orbital electron populations 1.22326 0.92673 1.04590 1.03638 1.22433 0.95792 0.97136 0.84278 0.88580 1.86260 1.80210 1.36845 1.15615 1.18735 0.92687 0.89933 0.86605 1.21436 1.07908 0.94324 1.00667 1.20770 0.95316 0.99506 0.91181 1.21014 1.05639 0.94324 1.00753 1.17278 0.96402 0.91981 0.82467 1.91514 1.83209 1.86188 1.50527 1.20299 1.07197 1.02650 0.90832 1.19867 0.81366 0.86046 0.84218 1.90715 1.40352 1.23359 1.86365 1.46376 1.55941 1.27135 1.06047 1.19174 0.95439 0.92977 0.79324 1.21154 1.37459 1.09245 0.90618 0.91847 1.24954 0.94678 0.95075 0.99242 1.69962 1.37128 1.20591 1.24442 0.86452 0.78912 0.79842 0.81573 1.20027 1.21029 1.20025 0.89817 0.90556 0.91030 0.84380 0.84668 0.84736 0.83711 0.77585 0.95263 0.95303 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.12 37.16 0.34 -1.61 16 2 C 0.06 0.90 2.63 -27.88 -0.07 0.83 16 3 H 0.10 1.10 6.31 -51.93 -0.33 0.77 16 4 O -0.28 -4.38 9.34 -39.29 -0.37 -4.75 16 5 C 0.17 2.17 6.60 -39.23 -0.26 1.92 16 6 C -0.22 -2.29 8.24 -39.43 -0.32 -2.61 16 7 C -0.05 -0.42 10.04 -39.62 -0.40 -0.82 16 8 C -0.20 -1.84 10.02 -39.49 -0.40 -2.24 16 9 C 0.14 1.56 7.30 -39.44 -0.29 1.28 16 10 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 11 C -0.19 -2.39 9.97 -39.37 -0.39 -2.79 16 12 C 0.50 9.90 7.18 -10.98 -0.08 9.82 16 13 O -0.53 -13.10 16.51 -14.31 -0.24 -13.34 16 14 N -0.70 -14.09 5.51 -61.47 -0.34 -14.43 16 15 C 0.25 6.46 5.43 -5.19 -0.03 6.44 16 16 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 17 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.61 13.29 55.43 0.74 -24.88 16 20 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.64 6.91 -51.93 -0.36 0.28 16 27 H 0.14 1.15 5.43 -52.49 -0.28 0.87 16 28 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.39 6.42 8.11 -40.82 -0.33 6.08 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.83 8.14 -51.92 -0.42 0.40 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -32.35 303.22 -6.72 -39.06 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.78 Total: 2.82 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.32 Total: -2.81 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.40 Total: -39.31 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.60 Total: -18.08 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.35 -6.72 -39.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353965148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.301 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds