Wall clock time and date at job start Mon Mar 30 2020 00:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47275 * 2 1 4 4 O 1.42900 * 109.47387 * 239.99315 * 2 1 3 5 5 C 1.35902 * 116.99440 * 84.96086 * 4 2 1 6 6 C 1.38761 * 120.04415 * 354.55527 * 5 4 2 7 7 C 1.38133 * 119.99739 * 179.97438 * 6 5 4 8 8 C 1.38251 * 120.07838 * 359.97438 * 7 6 5 9 9 C 1.38475 * 120.08327 * 0.04516 * 8 7 6 10 10 F 1.35107 * 119.99845 * 179.97438 * 9 8 7 11 11 C 1.38382 * 120.00799 * 359.70118 * 9 8 7 12 12 C 1.50707 * 109.47096 * 119.99639 * 2 1 3 13 13 O 1.21282 * 119.99822 * 114.99873 * 12 2 1 14 14 N 1.34772 * 119.99792 * 295.00173 * 12 2 1 15 15 C 1.46503 * 119.99931 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.47196 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00217 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99953 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47113 * 59.99874 * 20 18 16 22 22 H 1.48499 * 109.47090 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47080 * 300.00061 * 20 18 16 24 24 H 1.08996 * 109.47265 * 299.99888 * 1 2 3 25 25 H 1.09005 * 109.46875 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47243 * 60.00440 * 1 2 3 27 27 H 1.07999 * 120.00366 * 359.97438 * 6 5 4 28 28 H 1.07995 * 119.96445 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.96059 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.04485 * 180.27337 * 11 9 8 31 31 H 0.97004 * 120.00546 * 359.97438 * 14 12 2 32 32 H 1.08999 * 109.47555 * 300.00761 * 15 14 12 33 33 H 1.09009 * 109.46678 * 60.00282 * 15 14 12 34 34 H 0.96997 * 119.99674 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1118 0.0622 -2.3043 6 6 1.6584 1.3735 -2.3278 7 6 1.7665 2.1209 -3.4845 8 6 2.3265 1.5643 -4.6193 9 6 2.7796 0.2559 -4.5996 10 9 3.3261 -0.2865 -5.7098 11 6 2.6779 -0.4944 -3.4413 12 6 2.0323 -0.7104 1.2306 13 8 2.6530 -1.7467 1.1216 14 7 1.7919 -0.1941 2.4520 15 6 2.2797 -0.8849 3.6483 16 6 1.8816 -0.1061 4.8755 17 1 1.3209 0.8114 4.7746 18 6 2.2332 -0.5650 6.1273 19 7 2.9164 -1.6820 6.2502 20 14 1.7392 0.4000 7.6486 21 1 0.2591 0.5065 7.7082 22 1 2.2338 -0.3002 8.8611 23 1 2.3312 1.7603 7.5858 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.2211 1.8097 -1.4419 28 1 1.4139 3.1415 -3.5021 29 1 2.4104 2.1505 -5.5225 30 1 3.0351 -1.5134 -3.4239 31 1 1.2958 0.6350 2.5392 32 1 1.8448 -1.8833 3.6941 33 1 3.3661 -0.9634 3.6048 34 1 3.1635 -2.0049 7.1309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353965148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:02 Heat of formation + Delta-G solvation = -121.042715 kcal Electronic energy + Delta-G solvation = -19305.511998 eV Core-core repulsion = 15924.266112 eV Total energy + Delta-G solvation = -3381.245885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.98210 -41.68581 -40.26427 -38.21718 -36.21754 -34.55041 -33.19693 -31.49780 -30.73264 -29.25395 -26.02150 -24.64639 -23.96987 -23.10903 -21.38341 -19.67876 -19.26270 -17.96369 -17.46628 -17.34862 -17.02442 -16.89298 -16.69438 -16.47606 -16.12328 -15.69592 -15.12189 -14.71690 -14.61088 -14.15398 -14.00663 -13.93493 -13.49324 -13.28869 -12.96041 -12.90382 -12.67031 -12.58716 -12.23792 -12.13279 -11.96833 -11.52373 -10.80161 -10.79393 -9.94429 -9.92702 -9.34364 -8.28956 -6.46218 0.09027 0.25915 1.44390 1.48936 1.55622 1.56041 1.59950 2.36661 2.57321 2.64265 3.06378 3.34444 3.55516 3.75757 3.80986 3.87980 4.00470 4.07877 4.23710 4.40677 4.65656 4.69322 4.99854 5.06644 5.08199 5.13311 5.20588 5.22458 5.32711 5.41959 5.60967 5.71154 5.81972 6.25592 6.63103 6.79327 7.21360 7.37641 8.83122 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044615 B = 0.003298 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.436562 B = 8488.493230 C = 8804.196975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 H 0.134 0.866 4 O -0.314 6.314 5 C 0.141 3.859 6 C -0.218 4.218 7 C -0.038 4.038 8 C -0.188 4.188 9 C 0.123 3.877 10 F -0.143 7.143 11 C -0.213 4.213 12 C 0.496 3.504 13 O -0.592 6.592 14 N -0.693 5.693 15 C 0.266 3.734 16 C -0.555 4.555 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.289 1.289 23 H -0.260 1.260 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.163 0.837 28 H 0.178 0.822 29 H 0.162 0.838 30 H 0.128 0.872 31 H 0.413 0.587 32 H -0.011 1.011 33 H -0.012 1.012 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 13.247 -18.670 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 H 0.151 0.849 4 O -0.227 6.227 5 C 0.095 3.905 6 C -0.237 4.237 7 C -0.056 4.056 8 C -0.207 4.207 9 C 0.103 3.897 10 F -0.122 7.122 11 C -0.233 4.233 12 C 0.282 3.718 13 O -0.472 6.472 14 N -0.345 5.345 15 C 0.143 3.857 16 C -0.593 4.593 17 H 0.108 0.892 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.809 3.191 21 H -0.185 1.185 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.180 0.820 28 H 0.195 0.805 29 H 0.179 0.821 30 H 0.146 0.854 31 H 0.250 0.750 32 H 0.007 0.993 33 H 0.006 0.994 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.309 12.159 -18.607 23.106 hybrid contribution 0.238 -0.350 0.815 0.918 sum -6.072 11.810 -17.792 22.201 Atomic orbital electron populations 1.22360 0.89897 1.04168 1.06168 1.22373 0.97502 0.97201 0.81221 0.84922 1.86199 1.81260 1.38542 1.16696 1.18925 0.94586 0.91322 0.85618 1.21741 1.06828 0.92815 1.02284 1.21259 0.93581 1.00956 0.89785 1.21415 1.03876 0.93179 1.02236 1.17482 0.97312 0.92990 0.81873 1.91492 1.83476 1.86512 1.50716 1.20358 1.08400 1.02553 0.91983 1.20974 0.79781 0.85354 0.85673 1.90683 1.42898 1.26259 1.87376 1.46014 1.55967 1.27587 1.04918 1.18608 0.92818 0.92068 0.82162 1.21583 1.37258 1.09912 0.90565 0.89202 1.26094 0.94354 0.95984 1.03237 1.70141 1.38781 1.22840 1.25349 0.85184 0.79160 0.78368 0.76376 1.18453 1.21453 1.18476 0.87817 0.92558 0.87822 0.81954 0.80472 0.82078 0.85371 0.74987 0.99301 0.99406 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 9.12 71.98 0.66 -2.66 16 2 C 0.08 2.05 2.63 29.85 0.08 2.13 16 3 H 0.13 2.57 6.31 -2.39 -0.02 2.55 16 4 O -0.31 -9.97 9.34 -73.46 -0.69 -10.66 16 5 C 0.14 3.55 6.60 22.50 0.15 3.69 16 6 C -0.22 -3.63 8.24 22.37 0.18 -3.44 16 7 C -0.04 -0.47 10.04 22.25 0.22 -0.25 16 8 C -0.19 -2.87 10.02 22.33 0.22 -2.64 16 9 C 0.12 2.68 7.30 22.36 0.16 2.84 16 10 F -0.14 -3.33 17.27 44.97 0.78 -2.56 16 11 C -0.21 -5.50 9.97 22.41 0.22 -5.28 16 12 C 0.50 19.97 7.18 87.66 0.63 20.60 16 13 O -0.59 -31.02 16.51 15.95 0.26 -30.76 16 14 N -0.69 -27.85 5.51 -466.77 -2.57 -30.43 16 15 C 0.27 14.29 5.43 85.63 0.46 14.76 16 16 C -0.56 -29.13 9.28 25.60 0.24 -28.89 16 17 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 18 C 0.00 0.16 5.46 84.66 0.46 0.62 16 19 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 20 Si 0.99 41.04 29.54 68.60 2.03 43.07 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 H 0.10 1.62 7.92 -2.39 -0.02 1.60 16 25 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.10 1.41 6.91 -2.39 -0.02 1.39 16 27 H 0.16 1.83 5.43 -2.91 -0.02 1.81 16 28 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 30 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.41 12.74 8.11 -92.71 -0.75 11.99 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H -0.01 -0.74 8.14 -2.38 -0.02 -0.75 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -76.33 303.22 4.17 -72.16 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.38 Total: 13.12 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 3.70 Total: 1.48 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -2.29 Total: -85.86 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.42 Total: -41.42 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -76.33 4.17 -72.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353965148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.879 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds