Wall clock time and date at job start Mon Mar 30 2020 00:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47044 * 2 1 4 4 O 1.42902 * 109.47161 * 120.00302 * 2 1 3 5 5 C 1.35957 * 116.99947 * 275.01079 * 4 2 1 6 6 C 1.38662 * 120.06128 * 5.49015 * 5 4 2 7 7 C 1.38185 * 119.96906 * 179.97438 * 6 5 4 8 8 C 1.38254 * 120.09370 * 0.02562 * 7 6 5 9 9 C 1.38249 * 120.12874 * 359.97438 * 8 7 6 10 10 C 1.38330 * 120.02921 * 0.25862 * 9 8 7 11 11 F 1.35101 * 120.04942 * 179.72355 * 10 9 8 12 12 C 1.50697 * 109.46949 * 239.99930 * 2 1 3 13 13 O 1.21287 * 120.00225 * 244.99626 * 12 2 1 14 14 N 1.34780 * 119.99785 * 65.00248 * 12 2 1 15 15 C 1.46503 * 119.99839 * 179.97438 * 14 12 2 16 16 C 1.50695 * 109.47014 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00044 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99616 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00282 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46980 * 89.99978 * 20 18 16 22 22 H 1.48497 * 109.47113 * 210.00054 * 20 18 16 23 23 H 1.48503 * 109.46775 * 330.00239 * 20 18 16 24 24 H 1.09004 * 109.47491 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47101 * 299.99633 * 1 2 3 26 26 H 1.09000 * 109.47681 * 59.99790 * 1 2 3 27 27 H 1.08003 * 120.01615 * 359.95387 * 6 5 4 28 28 H 1.08006 * 119.94900 * 180.02562 * 7 6 5 29 29 H 1.08005 * 119.93400 * 180.02562 * 8 7 6 30 30 H 1.08004 * 119.98905 * 179.97438 * 9 8 7 31 31 H 0.96997 * 120.00390 * 359.97438 * 14 12 2 32 32 H 1.09002 * 109.47093 * 300.00055 * 15 14 12 33 33 H 1.09001 * 109.46978 * 59.99728 * 15 14 12 34 34 H 0.97004 * 119.99476 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1123 0.0627 2.3047 6 6 1.6592 1.3730 2.3288 7 6 1.7673 2.1196 3.4866 8 6 2.3273 1.5622 4.6211 9 6 2.7804 0.2562 4.6014 10 6 2.6791 -0.4943 3.4439 11 9 3.1269 -1.7688 3.4226 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1215 14 7 1.7918 -0.1941 -2.4520 15 6 2.2806 -0.8845 -3.6482 16 6 1.8813 -0.1065 -4.8755 17 1 1.3200 0.8106 -4.7746 18 6 2.2325 -0.5656 -6.1272 19 7 2.9157 -1.6827 -6.2501 20 14 1.7370 0.3983 -7.6487 21 1 2.8015 1.3786 -7.9821 22 1 1.5502 -0.5361 -8.7876 23 1 0.4653 1.1188 -7.3857 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.2221 1.8099 1.4430 28 1 1.4139 3.1400 3.5051 29 1 2.4103 2.1480 5.5247 30 1 3.2179 -0.1768 5.4889 31 1 1.2952 0.6345 -2.5392 32 1 3.3669 -0.9623 -3.6043 33 1 1.8463 -1.8832 -3.6942 34 1 3.1631 -2.0055 -7.1308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353968109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:06 Heat of formation + Delta-G solvation = -97.368623 kcal Electronic energy + Delta-G solvation = -19550.303176 eV Core-core repulsion = 16170.083877 eV Total energy + Delta-G solvation = -3380.219300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.76992 -40.48185 -38.81979 -37.30564 -34.28909 -32.71786 -31.77236 -30.85534 -29.70943 -27.32515 -24.75841 -23.36307 -22.68075 -21.93620 -19.76376 -18.65528 -17.68477 -17.06782 -16.46141 -16.02307 -15.66873 -15.45962 -15.20724 -14.89842 -14.56722 -14.40267 -14.00251 -13.50640 -13.12981 -12.94798 -12.54933 -12.45611 -12.13258 -12.02183 -11.83238 -11.69270 -11.23743 -11.08108 -11.01098 -10.89643 -10.35586 -9.45673 -9.21594 -9.06702 -8.79557 -8.32271 -7.99515 -6.20818 -4.28589 0.91257 1.06499 2.75085 3.15628 3.21549 3.27781 3.30011 3.38163 3.96412 4.14244 4.31197 4.52881 4.61067 4.69202 4.92619 4.99662 5.01294 5.13518 5.15416 5.28659 5.52361 5.57484 5.77333 5.84433 5.96019 6.01815 6.15044 6.45607 7.13620 7.24516 7.32821 7.45015 7.59492 7.90762 8.48748 8.70197 8.95787 9.37849 10.89312 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038841 B = 0.003631 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.714744 B = 7709.365699 C = 8142.813689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.063 3.937 3 H 0.096 0.904 4 O -0.275 6.275 5 C 0.104 3.896 6 C -0.188 4.188 7 C -0.089 4.089 8 C -0.136 4.136 9 C -0.117 4.117 10 C 0.069 3.931 11 F -0.130 7.130 12 C 0.502 3.498 13 O -0.529 6.529 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.545 4.545 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.391 0.609 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 9.782 19.321 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.003 3.997 3 H 0.113 0.887 4 O -0.187 6.187 5 C 0.057 3.943 6 C -0.207 4.207 7 C -0.108 4.108 8 C -0.154 4.154 9 C -0.136 4.136 10 C 0.049 3.951 11 F -0.108 7.108 12 C 0.285 3.715 13 O -0.406 6.406 14 N -0.355 5.355 15 C 0.130 3.870 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.159 0.841 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.224 0.776 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.170 8.609 19.174 21.428 hybrid contribution -0.436 0.834 -1.008 1.379 sum -4.606 9.443 18.166 20.985 Atomic orbital electron populations 1.22323 0.92699 1.04599 1.03572 1.22432 0.95781 0.97086 0.84369 0.88677 1.86323 1.80588 1.36355 1.15403 1.19180 0.96786 0.91391 0.86932 1.21286 1.05621 0.93128 1.00666 1.21012 0.97814 0.99854 0.92079 1.20900 1.00840 0.94562 0.99084 1.21023 1.01302 0.94841 0.96459 1.17050 1.03457 0.81180 0.93452 1.91532 1.87011 1.35335 1.96931 1.19863 0.81399 0.86069 0.84201 1.90725 1.40222 1.23302 1.86335 1.46369 1.55971 1.27180 1.06023 1.19176 0.95426 0.93012 0.79342 1.21188 1.37318 1.09252 0.90599 0.91806 1.24960 0.94724 0.95062 0.99252 1.69979 1.37248 1.20563 1.24318 0.86392 0.78907 0.79553 0.81918 1.20430 1.20968 1.19718 0.90551 0.91104 0.89792 0.84145 0.85061 0.84976 0.84156 0.77614 0.95312 0.95260 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.13 37.16 0.34 -1.71 16 2 C 0.06 0.95 2.64 -27.89 -0.07 0.88 16 3 H 0.10 1.15 6.31 -51.93 -0.33 0.82 16 4 O -0.27 -4.71 9.20 -39.47 -0.36 -5.08 16 5 C 0.10 1.46 6.61 -39.18 -0.26 1.20 16 6 C -0.19 -1.98 8.24 -39.44 -0.33 -2.30 16 7 C -0.09 -0.75 10.04 -39.59 -0.40 -1.14 16 8 C -0.14 -1.10 10.04 -39.57 -0.40 -1.50 16 9 C -0.12 -1.17 10.02 -39.54 -0.40 -1.57 16 10 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 11 F -0.13 -2.07 17.11 2.25 0.04 -2.04 16 12 C 0.50 10.27 7.18 -10.99 -0.08 10.19 16 13 O -0.53 -13.56 16.51 -14.31 -0.24 -13.79 16 14 N -0.71 -14.46 5.51 -61.47 -0.34 -14.80 16 15 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 16 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 17 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.84 13.29 55.43 0.74 -25.11 16 20 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.67 6.91 -51.93 -0.36 0.31 16 26 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 27 H 0.14 1.21 5.43 -52.48 -0.28 0.93 16 28 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 29 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 30 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.39 6.58 8.10 -40.82 -0.33 6.25 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -33.84 303.03 -6.72 -40.56 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.78 Total: 2.13 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.32 Total: -1.92 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.40 Total: -39.90 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.60 Total: -18.87 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.84 -6.72 -40.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353968109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.806 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds