Wall clock time and date at job start Mon Mar 30 2020 00:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47044 * 2 1 4 4 O 1.42902 * 109.47161 * 120.00302 * 2 1 3 5 5 C 1.35957 * 116.99947 * 275.01079 * 4 2 1 6 6 C 1.38662 * 120.06128 * 5.49015 * 5 4 2 7 7 C 1.38185 * 119.96906 * 179.97438 * 6 5 4 8 8 C 1.38254 * 120.09370 * 0.02562 * 7 6 5 9 9 C 1.38249 * 120.12874 * 359.97438 * 8 7 6 10 10 C 1.38330 * 120.02921 * 0.25862 * 9 8 7 11 11 F 1.35101 * 120.04942 * 179.72355 * 10 9 8 12 12 C 1.50697 * 109.46949 * 239.99930 * 2 1 3 13 13 O 1.21287 * 120.00225 * 244.99626 * 12 2 1 14 14 N 1.34780 * 119.99785 * 65.00248 * 12 2 1 15 15 C 1.46503 * 119.99839 * 179.97438 * 14 12 2 16 16 C 1.50695 * 109.47014 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00044 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99616 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00282 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46980 * 89.99978 * 20 18 16 22 22 H 1.48497 * 109.47113 * 210.00054 * 20 18 16 23 23 H 1.48503 * 109.46775 * 330.00239 * 20 18 16 24 24 H 1.09004 * 109.47491 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47101 * 299.99633 * 1 2 3 26 26 H 1.09000 * 109.47681 * 59.99790 * 1 2 3 27 27 H 1.08003 * 120.01615 * 359.95387 * 6 5 4 28 28 H 1.08006 * 119.94900 * 180.02562 * 7 6 5 29 29 H 1.08005 * 119.93400 * 180.02562 * 8 7 6 30 30 H 1.08004 * 119.98905 * 179.97438 * 9 8 7 31 31 H 0.96997 * 120.00390 * 359.97438 * 14 12 2 32 32 H 1.09002 * 109.47093 * 300.00055 * 15 14 12 33 33 H 1.09001 * 109.46978 * 59.99728 * 15 14 12 34 34 H 0.97004 * 119.99476 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1123 0.0627 2.3047 6 6 1.6592 1.3730 2.3288 7 6 1.7673 2.1196 3.4866 8 6 2.3273 1.5622 4.6211 9 6 2.7804 0.2562 4.6014 10 6 2.6791 -0.4943 3.4439 11 9 3.1269 -1.7688 3.4226 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1215 14 7 1.7918 -0.1941 -2.4520 15 6 2.2806 -0.8845 -3.6482 16 6 1.8813 -0.1065 -4.8755 17 1 1.3200 0.8106 -4.7746 18 6 2.2325 -0.5656 -6.1272 19 7 2.9157 -1.6827 -6.2501 20 14 1.7370 0.3983 -7.6487 21 1 2.8015 1.3786 -7.9821 22 1 1.5502 -0.5361 -8.7876 23 1 0.4653 1.1188 -7.3857 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.2221 1.8099 1.4430 28 1 1.4139 3.1400 3.5051 29 1 2.4103 2.1480 5.5247 30 1 3.2179 -0.1768 5.4889 31 1 1.2952 0.6345 -2.5392 32 1 3.3669 -0.9623 -3.6043 33 1 1.8463 -1.8832 -3.6942 34 1 3.1631 -2.0055 -7.1308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353968109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:06 Heat of formation + Delta-G solvation = -120.941486 kcal Electronic energy + Delta-G solvation = -19551.325373 eV Core-core repulsion = 16170.083877 eV Total energy + Delta-G solvation = -3381.241496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.83890 -41.63400 -40.23904 -38.36728 -36.24285 -34.56455 -33.09221 -31.63780 -30.59040 -29.27636 -26.04478 -24.76848 -23.72348 -23.18737 -21.40898 -19.65775 -19.21778 -18.15337 -17.84411 -17.19777 -17.14223 -16.96347 -16.49774 -16.27409 -15.74497 -15.55937 -15.39673 -14.98836 -14.27600 -14.13873 -14.01834 -13.93731 -13.43199 -13.26533 -12.95503 -12.92585 -12.71890 -12.61309 -12.22605 -12.16881 -11.97541 -11.50960 -10.83328 -10.82705 -9.96159 -9.92239 -9.24193 -8.30077 -6.47544 0.13878 0.25928 1.43609 1.46757 1.52840 1.56284 1.60828 2.36032 2.62204 2.64029 3.05258 3.26513 3.53689 3.71403 3.80594 3.86085 3.98032 4.26428 4.35016 4.45563 4.62391 4.68349 4.99267 5.06107 5.09470 5.11553 5.18403 5.27894 5.40019 5.43812 5.59495 5.72162 5.80373 6.24022 6.61585 6.76907 7.19716 7.35481 8.82328 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038841 B = 0.003631 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.714744 B = 7709.365699 C = 8142.813689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.076 3.924 3 H 0.133 0.867 4 O -0.318 6.318 5 C 0.070 3.930 6 C -0.187 4.187 7 C -0.078 4.078 8 C -0.123 4.123 9 C -0.116 4.116 10 C 0.024 3.976 11 F -0.158 7.158 12 C 0.496 3.504 13 O -0.592 6.592 14 N -0.692 5.692 15 C 0.265 3.735 16 C -0.554 4.554 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.988 3.012 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.251 1.251 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.413 0.587 32 H -0.013 1.013 33 H -0.012 1.012 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 14.166 20.414 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 H 0.150 0.850 4 O -0.231 6.231 5 C 0.024 3.976 6 C -0.205 4.205 7 C -0.096 4.096 8 C -0.141 4.141 9 C -0.134 4.134 10 C 0.004 3.996 11 F -0.137 7.137 12 C 0.281 3.719 13 O -0.473 6.473 14 N -0.344 5.344 15 C 0.143 3.857 16 C -0.592 4.592 17 H 0.108 0.892 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.811 3.189 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.175 1.175 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.189 0.811 30 H 0.177 0.823 31 H 0.250 0.750 32 H 0.005 0.995 33 H 0.006 0.994 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.092 13.053 20.308 24.898 hybrid contribution 0.189 -0.498 -1.185 1.299 sum -5.903 12.555 19.123 23.625 Atomic orbital electron populations 1.22349 0.89861 1.04069 1.06175 1.22374 0.97549 0.97133 0.81288 0.85022 1.86248 1.81797 1.38365 1.16716 1.19530 0.99120 0.92995 0.85922 1.21587 1.04931 0.91530 1.02473 1.21537 0.95968 1.01204 0.90892 1.21426 0.98525 0.93586 1.00541 1.21358 1.00835 0.95536 0.95694 1.17705 1.05661 0.80894 0.95291 1.91447 1.87701 1.37346 1.97178 1.20985 0.79794 0.85357 0.85718 1.90689 1.42901 1.26315 1.87386 1.46007 1.55921 1.27614 1.04853 1.18623 0.92782 0.92106 0.82196 1.21602 1.37211 1.09913 0.90491 0.89158 1.26120 0.94365 0.95981 1.03296 1.70157 1.38836 1.22828 1.25318 0.85108 0.79355 0.77785 0.76665 1.19606 1.21235 1.17487 0.92730 0.87863 0.87653 0.82069 0.81062 0.81130 0.82337 0.74969 0.99464 0.99355 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 9.13 71.98 0.66 -2.94 16 2 C 0.08 2.22 2.64 29.85 0.08 2.30 16 3 H 0.13 2.82 6.31 -2.39 -0.02 2.81 16 4 O -0.32 -11.24 9.20 -74.08 -0.68 -11.92 16 5 C 0.07 1.94 6.61 22.53 0.15 2.09 16 6 C -0.19 -3.30 8.24 22.36 0.18 -3.12 16 7 C -0.08 -0.92 10.04 22.26 0.22 -0.69 16 8 C -0.12 -1.46 10.04 22.28 0.22 -1.24 16 9 C -0.12 -2.10 10.02 22.29 0.22 -1.88 16 10 C 0.02 0.67 7.31 22.45 0.16 0.84 16 11 F -0.16 -5.46 17.11 44.97 0.77 -4.70 16 12 C 0.50 21.02 7.18 87.66 0.63 21.65 16 13 O -0.59 -32.61 16.51 15.94 0.26 -32.35 16 14 N -0.69 -28.86 5.51 -466.78 -2.57 -31.43 16 15 C 0.27 14.60 5.43 85.63 0.46 15.06 16 16 C -0.55 -29.54 9.28 25.60 0.24 -29.30 16 17 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 20 Si 0.99 41.53 29.54 68.60 2.03 43.56 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 25 H 0.10 1.58 6.91 -2.39 -0.02 1.56 16 26 H 0.10 1.80 7.92 -2.39 -0.02 1.78 16 27 H 0.16 2.04 5.43 -2.91 -0.02 2.02 16 28 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 29 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 30 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.41 13.28 8.10 -92.71 -0.75 12.53 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -81.69 303.03 4.17 -77.52 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.38 Total: 12.10 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 3.70 Total: 3.32 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -2.29 Total: -87.54 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -0.42 Total: -44.27 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.77 Total: -4.70 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -81.69 4.17 -77.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353968109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.424 kcal (2) G-P(sol) polarization free energy of solvation -81.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds