Wall clock time and date at job start Mon Mar 30 2020 00:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47527 * 2 1 4 4 O 1.42902 * 109.47057 * 239.99795 * 2 1 3 5 5 C 1.35960 * 116.99824 * 84.87048 * 4 2 1 6 6 C 1.38667 * 120.06122 * 354.57552 * 5 4 2 7 7 C 1.38180 * 119.96620 * 180.02562 * 6 5 4 8 8 C 1.38260 * 120.09887 * 0.02562 * 7 6 5 9 9 C 1.38256 * 120.12662 * 359.97438 * 8 7 6 10 10 C 1.38339 * 120.02773 * 0.27605 * 9 8 7 11 11 F 1.35100 * 120.04914 * 179.72242 * 10 9 8 12 12 C 1.50696 * 109.46981 * 120.00092 * 2 1 3 13 13 O 1.21285 * 120.00094 * 119.99768 * 12 2 1 14 14 N 1.34777 * 120.00517 * 299.99677 * 12 2 1 15 15 C 1.46495 * 120.00514 * 180.02562 * 14 12 2 16 16 C 1.50694 * 109.47100 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00368 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99686 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00264 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99583 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47257 * 59.99971 * 20 18 16 22 22 H 1.48503 * 109.46784 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47028 * 299.99646 * 20 18 16 24 24 H 1.08999 * 109.46999 * 59.99752 * 1 2 3 25 25 H 1.08996 * 109.47527 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47060 * 300.00144 * 1 2 3 27 27 H 1.07995 * 120.01558 * 0.02562 * 6 5 4 28 28 H 1.08000 * 119.94840 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.94220 * 180.02562 * 8 7 6 30 30 H 1.07996 * 119.98780 * 180.02562 * 9 8 7 31 31 H 0.97004 * 119.99374 * 0.02562 * 14 12 2 32 32 H 1.09007 * 109.47076 * 300.00396 * 15 14 12 33 33 H 1.09002 * 109.46881 * 59.99981 * 15 14 12 34 34 H 0.97003 * 119.99982 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1099 0.0622 -2.3053 6 6 1.6558 1.3722 -2.3294 7 6 1.7616 2.1181 -3.4878 8 6 2.3192 1.5602 -4.6233 9 6 2.7733 0.2544 -4.6036 10 6 2.6652 -0.4988 -3.4483 11 9 3.1037 -1.7765 -3.4303 12 6 2.0323 -0.7104 1.2304 13 8 2.7295 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1955 -0.9403 3.6507 16 6 1.6927 -0.2303 4.8811 17 1 1.0715 0.6476 4.7821 18 6 2.0265 -0.7010 6.1334 19 7 2.7833 -1.7696 6.2541 20 14 1.4037 0.1796 7.6587 21 1 -0.0813 0.1786 7.6591 22 1 1.8990 -0.5203 8.8712 23 1 1.8978 1.5800 7.6582 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2196 1.8091 -1.4434 28 1 1.4081 3.1385 -3.5061 29 1 2.4010 2.1456 -5.5271 30 1 3.2089 -0.1790 -5.4917 31 1 1.1488 0.5385 2.5436 32 1 1.8326 -1.9682 3.6508 33 1 3.2856 -0.9399 3.6505 34 1 3.0185 -2.1005 7.1351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353968110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:09 Heat of formation + Delta-G solvation = -120.733120 kcal Electronic energy + Delta-G solvation = -19551.851614 eV Core-core repulsion = 16170.619154 eV Total energy + Delta-G solvation = -3381.232460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.83854 -41.63561 -40.23991 -38.36609 -36.24782 -34.57908 -33.08425 -31.63868 -30.59156 -29.25645 -26.03851 -24.77875 -23.72240 -23.19653 -21.39677 -19.66091 -19.22162 -18.15473 -17.84229 -17.20219 -17.14852 -16.95257 -16.50221 -16.27824 -15.73608 -15.56395 -15.39881 -14.98404 -14.27527 -14.13666 -14.01606 -13.92969 -13.44398 -13.26225 -12.96520 -12.92800 -12.67749 -12.61149 -12.24044 -12.17126 -11.97275 -11.53679 -10.83397 -10.81394 -9.96056 -9.92256 -9.24080 -8.29858 -6.47526 0.13838 0.25998 1.43461 1.48286 1.51000 1.56230 1.61891 2.36143 2.62178 2.63839 3.05310 3.26451 3.53608 3.71098 3.80131 3.86581 3.97955 4.26352 4.34968 4.45364 4.62938 4.68427 4.99296 5.06058 5.09823 5.11559 5.18441 5.27866 5.39948 5.43771 5.59540 5.72137 5.80348 6.24033 6.61373 6.76801 7.19697 7.35474 8.82332 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039982 B = 0.003618 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.143102 B = 7737.031084 C = 8182.807058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 H 0.133 0.867 4 O -0.317 6.317 5 C 0.070 3.930 6 C -0.187 4.187 7 C -0.078 4.078 8 C -0.123 4.123 9 C -0.116 4.116 10 C 0.024 3.976 11 F -0.158 7.158 12 C 0.496 3.504 13 O -0.592 6.592 14 N -0.692 5.692 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.288 1.288 23 H -0.260 1.260 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.413 0.587 32 H -0.012 1.012 33 H -0.012 1.012 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 14.141 -20.394 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 H 0.150 0.850 4 O -0.231 6.231 5 C 0.025 3.975 6 C -0.205 4.205 7 C -0.096 4.096 8 C -0.141 4.141 9 C -0.134 4.134 10 C 0.004 3.996 11 F -0.137 7.137 12 C 0.281 3.719 13 O -0.473 6.473 14 N -0.344 5.344 15 C 0.143 3.857 16 C -0.594 4.594 17 H 0.108 0.892 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.811 3.189 21 H -0.184 1.184 22 H -0.214 1.214 23 H -0.184 1.184 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.189 0.811 30 H 0.177 0.823 31 H 0.250 0.750 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.044 13.065 -20.287 24.876 hybrid contribution 0.126 -0.522 1.179 1.296 sum -5.918 12.543 -19.108 23.611 Atomic orbital electron populations 1.22363 0.89852 1.04116 1.06185 1.22374 0.97530 0.97152 0.81294 0.85010 1.86245 1.81792 1.38410 1.16670 1.19531 0.99193 0.92973 0.85843 1.21584 1.04899 0.91582 1.02475 1.21535 0.95991 1.01193 0.90881 1.21428 0.98515 0.93622 1.00524 1.21361 1.00781 0.95510 0.95764 1.17703 1.05926 0.80693 0.95229 1.91446 1.88011 1.37028 1.97181 1.20986 0.80415 0.84741 0.85725 1.90689 1.40315 1.28864 1.87448 1.46010 1.51988 1.31722 1.04660 1.18616 0.93025 0.91844 0.82191 1.21576 1.33497 1.13939 0.90351 0.89160 1.26116 0.94676 0.95592 1.03327 1.70143 1.37102 1.24496 1.25392 0.85163 0.79054 0.78471 0.76256 1.18438 1.21400 1.18406 0.87887 0.92657 0.87618 0.82083 0.81069 0.81130 0.82335 0.74970 0.99413 0.99421 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.07 71.98 0.65 -2.93 16 2 C 0.08 2.22 2.65 29.85 0.08 2.30 16 3 H 0.13 2.85 6.32 -2.39 -0.02 2.83 16 4 O -0.32 -11.24 9.20 -74.06 -0.68 -11.92 16 5 C 0.07 1.95 6.61 22.53 0.15 2.10 16 6 C -0.19 -3.32 8.24 22.36 0.18 -3.13 16 7 C -0.08 -0.92 10.04 22.26 0.22 -0.70 16 8 C -0.12 -1.46 10.04 22.28 0.22 -1.24 16 9 C -0.12 -2.10 10.02 22.30 0.22 -1.88 16 10 C 0.02 0.67 7.31 22.45 0.16 0.84 16 11 F -0.16 -5.46 17.11 44.97 0.77 -4.69 16 12 C 0.50 21.02 7.23 87.66 0.63 21.66 16 13 O -0.59 -32.63 16.50 15.99 0.26 -32.37 16 14 N -0.69 -28.87 5.44 -466.80 -2.54 -31.41 16 15 C 0.27 14.62 5.43 85.63 0.46 15.09 16 16 C -0.56 -29.64 9.28 25.60 0.24 -29.41 16 17 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 20 Si 0.99 41.51 29.54 68.60 2.03 43.53 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H 0.10 1.57 6.90 -2.39 -0.02 1.55 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.11 1.77 7.56 -2.39 -0.02 1.75 16 27 H 0.16 2.05 5.43 -2.91 -0.02 2.03 16 28 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 29 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 30 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.41 13.29 7.74 -92.71 -0.72 12.58 16 32 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 33 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -81.68 302.22 4.24 -77.44 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.42 Total: 12.27 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 3.70 Total: 3.29 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.25 Total: -87.55 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.42 Total: -44.29 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.77 Total: -4.69 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -81.68 4.24 -77.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353968110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.295 kcal (2) G-P(sol) polarization free energy of solvation -81.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds