Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47413 * 2 1 4 4 C 1.36885 * 119.99563 * 261.77793 * 3 2 1 5 5 H 1.08003 * 119.99522 * 191.10004 * 4 3 2 6 6 C 1.39002 * 120.00579 * 11.09996 * 4 3 2 7 7 N 1.31396 * 120.00115 * 26.23501 * 6 4 3 8 8 Si 1.86800 * 119.99949 * 206.24549 * 6 4 3 9 9 H 1.48494 * 109.47775 * 59.99459 * 8 6 4 10 10 H 1.48506 * 109.47093 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46765 * 299.99190 * 8 6 4 12 12 C 1.34773 * 120.00086 * 81.77095 * 3 2 1 13 13 O 1.21747 * 120.00042 * 182.35774 * 12 3 2 14 14 C 1.46461 * 119.99796 * 2.36023 * 12 3 2 15 15 C 1.36772 * 125.45869 * 172.01616 * 14 12 3 16 16 C 1.37445 * 113.27496 * 180.02562 * 15 14 12 17 17 C 1.33848 * 115.11169 * 359.97438 * 16 15 14 18 18 C 1.50693 * 124.51626 * 180.26364 * 17 16 15 19 19 C 1.53003 * 109.46931 * 119.72654 * 18 17 16 20 20 C 1.52996 * 109.47403 * 239.72524 * 18 17 16 21 21 S 1.70615 * 110.96612 * 0.02562 * 17 16 15 22 22 H 1.09002 * 109.47419 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47529 * 300.00228 * 1 2 3 24 24 H 1.09008 * 109.46836 * 60.00463 * 1 2 3 25 25 H 1.09003 * 109.47753 * 239.99490 * 2 1 3 26 26 H 1.09002 * 109.47267 * 120.00096 * 2 1 3 27 27 H 0.97004 * 120.00528 * 180.02562 * 7 6 4 28 28 H 1.07998 * 123.36145 * 0.03866 * 15 14 12 29 29 H 1.07995 * 122.44276 * 180.02562 * 16 15 14 30 30 H 1.08994 * 109.47330 * 359.73410 * 18 17 16 31 31 H 1.08998 * 109.47600 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.47208 * 300.00516 * 19 18 17 33 33 H 1.09006 * 109.46875 * 60.00222 * 19 18 17 34 34 H 1.09007 * 109.46683 * 60.00590 * 20 18 17 35 35 H 1.08999 * 109.47169 * 179.97438 * 20 18 17 36 36 H 1.08998 * 109.47623 * 300.00204 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4063 1.9699 -1.1733 5 1 2.9306 2.9140 -1.1562 6 6 2.1257 1.3527 -2.3868 7 7 1.1008 0.5366 -2.4872 8 14 3.2058 1.6832 -3.8746 9 1 4.6003 1.2696 -3.5758 10 1 2.6986 0.9094 -5.0362 11 1 3.1772 3.1330 -4.1946 12 6 2.0855 2.0722 1.1551 13 8 2.4506 3.2337 1.1494 14 6 1.7193 1.4260 2.4174 15 6 1.8902 1.9641 3.6631 16 6 1.4587 1.1397 4.6747 17 6 0.9513 -0.0325 4.2748 18 6 0.4125 -1.0908 5.2025 19 6 -1.0617 -1.3466 4.8828 20 6 1.2068 -2.3850 5.0159 21 16 0.9900 -0.1662 2.5743 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.9051 0.1055 -3.3339 28 1 2.3210 2.9395 3.8348 29 1 1.5235 1.4179 5.7162 30 1 0.5070 -0.7520 6.2341 31 1 -1.4514 -2.1124 5.5535 32 1 -1.6276 -0.4246 5.0157 33 1 -1.1563 -1.6855 3.8511 34 1 2.2571 -2.2028 5.2437 35 1 0.8173 -3.1503 5.6872 36 1 1.1123 -2.7239 3.9843 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354706136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = -15.796170 kcal Electronic energy + Delta-G solvation = -18595.881120 eV Core-core repulsion = 15785.412243 eV Total energy + Delta-G solvation = -2810.468877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59839 -38.99836 -37.08708 -35.84084 -34.00293 -31.58130 -29.94356 -27.96925 -27.26044 -25.35899 -24.16806 -22.30772 -21.90025 -19.55551 -19.07857 -18.68447 -17.00933 -16.69701 -16.05719 -15.92511 -15.59317 -15.25397 -14.96394 -14.57517 -14.49338 -13.96061 -13.89519 -13.47817 -13.33282 -13.04518 -12.90942 -12.79697 -12.68713 -12.20064 -12.15902 -12.14287 -12.04633 -11.94093 -11.85195 -11.09211 -10.97667 -10.56615 -9.90639 -9.44135 -9.08207 -8.45367 -5.91366 -0.25892 0.70466 1.24058 1.37194 1.42879 1.52180 1.63991 2.24050 2.36863 2.94351 3.04935 3.75309 3.92548 4.07668 4.22117 4.30351 4.47182 4.60521 4.64649 4.70685 4.76520 4.82794 4.92564 5.01266 5.01383 5.16219 5.21547 5.27244 5.35064 5.39629 5.41402 5.46036 5.61971 5.80996 6.00121 6.43130 7.06749 7.31861 7.92849 8.53809 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031805 B = 0.006003 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.167109 B = 4662.894984 C = 5207.684006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.109 3.891 3 N -0.434 5.434 4 C -0.355 4.355 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.857 5.857 8 Si 0.986 3.014 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.278 1.278 12 C 0.481 3.519 13 O -0.641 6.641 14 C -0.280 4.280 15 C -0.089 4.089 16 C -0.158 4.158 17 C -0.236 4.236 18 C -0.022 4.022 19 C -0.147 4.147 20 C -0.147 4.147 21 S 0.270 5.730 22 H 0.082 0.918 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.281 0.719 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 -11.042 11.240 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 N -0.150 5.150 4 C -0.483 4.483 5 H 0.092 0.908 6 C -0.193 4.193 7 N -0.493 5.493 8 Si 0.809 3.191 9 H -0.196 1.196 10 H -0.186 1.186 11 H -0.203 1.203 12 C 0.272 3.728 13 O -0.533 6.533 14 C -0.400 4.400 15 C -0.123 4.123 16 C -0.187 4.187 17 C -0.355 4.355 18 C -0.043 4.043 19 C -0.205 4.205 20 C -0.205 4.205 21 S 0.540 5.460 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.174 0.826 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.275 -11.780 10.048 16.063 hybrid contribution 1.065 1.973 0.152 2.247 sum -3.211 -9.807 10.200 14.510 Atomic orbital electron populations 1.22183 0.94398 1.02614 1.01464 1.21842 0.96398 0.82328 1.00973 1.43920 1.53453 1.11874 1.05731 1.19609 1.36606 1.08317 0.83775 0.90753 1.25977 0.96303 0.96391 1.00676 1.70113 1.22064 1.29093 1.28039 0.85121 0.78689 0.78506 0.76759 1.19629 1.18648 1.20300 1.17380 0.85627 0.86029 0.83751 1.90563 1.56646 1.18795 1.87276 1.24722 1.15292 1.02675 0.97354 1.20719 1.00201 1.00837 0.90570 1.19918 1.04319 0.93918 1.00571 1.25459 1.05622 1.00866 1.03527 1.19800 0.95410 0.91870 0.97176 1.21943 0.94028 1.02302 1.02227 1.21940 1.00004 0.96094 1.02441 1.83542 1.54900 1.11182 0.96410 0.89927 0.94181 0.91172 0.88527 0.91747 0.90825 0.85162 0.82596 0.88492 0.89788 0.92845 0.92887 0.92714 0.89802 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 8.44 71.98 0.61 -5.37 16 2 C 0.11 4.87 4.84 86.38 0.42 5.29 16 3 N -0.43 -23.59 2.64 -640.28 -1.69 -25.28 16 4 C -0.36 -20.57 9.37 84.09 0.79 -19.78 16 5 H 0.07 4.68 7.35 -2.91 -0.02 4.66 16 6 C 0.01 0.60 4.82 84.94 0.41 1.01 16 7 N -0.86 -42.23 8.82 21.67 0.19 -42.04 16 8 Si 0.99 41.01 29.63 68.60 2.03 43.04 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 C 0.48 26.67 7.51 86.39 0.65 27.32 16 13 O -0.64 -40.69 16.46 -4.50 -0.07 -40.77 16 14 C -0.28 -12.43 6.10 24.07 0.15 -12.28 16 15 C -0.09 -3.49 10.03 21.74 0.22 -3.28 16 16 C -0.16 -4.79 9.95 21.08 0.21 -4.58 16 17 C -0.24 -6.55 4.95 24.68 0.12 -6.43 16 18 C -0.02 -0.44 3.25 -11.54 -0.04 -0.48 16 19 C -0.15 -2.60 9.08 71.98 0.65 -1.94 16 20 C -0.15 -2.53 9.08 71.98 0.65 -1.88 16 21 S 0.27 8.92 14.49 -56.49 -0.82 8.10 16 22 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 23 H 0.04 1.59 5.91 -8.56 -0.05 1.54 16 24 H 0.07 3.28 6.31 -2.38 -0.02 3.27 16 25 H 0.10 4.51 5.94 -2.39 -0.01 4.50 16 26 H 0.07 2.58 4.51 -21.18 -0.10 2.49 16 27 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 28 H 0.13 5.23 8.06 -2.91 -0.02 5.21 16 29 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.10 1.61 8.07 -2.39 -0.02 1.59 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.00 7.90 -2.38 -0.02 0.98 16 34 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.98 7.90 -2.39 -0.02 0.96 16 Total: -1.00 -68.06 299.81 5.43 -62.63 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.95 Total: 16.72 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.84 Total: -22.40 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -1.50 Total: -67.32 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.07 Total: -40.77 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 8.92 SS G_CDS: -0.82 Total: 8.10 kcal Total: -68.06 5.43 -62.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354706136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.837 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds