Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.36939 * 119.99660 * 263.78848 * 3 2 1 5 5 H 1.07998 * 119.99973 * 142.61784 * 4 3 2 6 6 C 1.38817 * 119.99803 * 322.60988 * 4 3 2 7 7 N 1.31620 * 119.99384 * 157.39649 * 6 4 3 8 8 Si 1.86795 * 120.00377 * 337.39491 * 6 4 3 9 9 H 1.48503 * 109.47143 * 95.71232 * 8 6 4 10 10 H 1.48493 * 109.47063 * 215.71576 * 8 6 4 11 11 H 1.48506 * 109.47182 * 335.71353 * 8 6 4 12 12 C 1.46494 * 120.00028 * 83.78834 * 3 2 1 13 13 C 1.52995 * 109.47492 * 90.00076 * 12 3 2 14 14 S 1.81400 * 109.47323 * 179.97438 * 13 12 3 15 15 O 1.42089 * 109.47040 * 289.05248 * 14 13 12 16 16 C 1.76200 * 102.99848 * 179.97438 * 14 13 12 17 17 C 1.38230 * 119.99874 * 90.00224 * 16 14 13 18 18 C 1.38240 * 119.99880 * 180.02562 * 17 16 14 19 19 C 1.38234 * 120.00043 * 359.95120 * 18 17 16 20 20 C 1.38237 * 119.99841 * 0.28527 * 19 18 17 21 21 C 1.38232 * 119.99795 * 359.52186 * 20 19 18 22 22 H 1.09001 * 109.46631 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47122 * 300.00032 * 1 2 3 24 24 H 1.08996 * 109.46853 * 60.00355 * 1 2 3 25 25 H 1.08998 * 109.47079 * 239.99424 * 2 1 3 26 26 H 1.09005 * 109.46618 * 119.99837 * 2 1 3 27 27 H 0.96998 * 119.99663 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.47428 * 329.99310 * 12 3 2 29 29 H 1.09001 * 109.47003 * 209.99897 * 12 3 2 30 30 H 1.08999 * 109.47142 * 59.99771 * 13 12 3 31 31 H 1.09001 * 109.46850 * 299.99915 * 13 12 3 32 32 H 1.07999 * 120.00342 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99909 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.99995 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.99530 * 179.72494 * 20 19 18 36 36 H 1.08002 * 119.99325 * 180.21458 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3675 1.9839 -1.1790 5 1 2.1496 3.0300 -1.3360 6 6 3.0017 1.2503 -2.1723 7 7 2.9451 1.6518 -3.4245 8 14 3.9354 -0.3064 -1.7318 9 1 3.0564 -1.4856 -1.9368 10 1 5.1348 -0.4264 -2.5991 11 1 4.3574 -0.2449 -0.3093 12 6 2.1331 2.1175 1.2612 13 6 3.5250 1.8960 1.8564 14 16 3.6673 2.8084 3.4178 15 8 3.7248 4.2023 3.1482 16 6 5.3072 2.4381 3.9452 17 6 6.3576 3.2482 3.5567 18 6 7.6443 2.9574 3.9701 19 6 7.8803 1.8570 4.7728 20 6 6.8304 1.0441 5.1572 21 6 5.5433 1.3372 4.7471 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.3879 1.1390 -4.1186 28 1 1.3775 1.7599 1.9609 29 1 1.9822 3.1811 1.0760 30 1 4.2804 2.2537 1.1569 31 1 3.6758 0.8325 2.0416 32 1 6.1733 4.1080 2.9296 33 1 8.4651 3.5901 3.6662 34 1 8.8855 1.6300 5.0960 35 1 7.0155 0.1818 5.7806 36 1 4.7226 0.7040 5.0504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355445347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = 10.036186 kcal Electronic energy + Delta-G solvation = -17969.354165 eV Core-core repulsion = 15160.005464 eV Total energy + Delta-G solvation = -2809.348701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.96169 -36.47159 -35.39352 -31.98843 -31.18632 -31.05607 -30.96717 -28.39023 -24.19912 -23.09085 -22.66355 -22.61997 -20.13358 -18.01175 -16.92308 -16.63453 -15.61529 -15.31482 -15.16276 -14.86041 -14.27733 -14.08444 -13.69968 -13.48918 -13.03000 -12.97098 -12.72783 -12.33673 -12.03881 -11.74784 -11.53924 -11.46330 -11.23305 -11.18772 -10.84528 -10.48840 -10.14217 -9.89799 -9.76465 -9.53136 -9.22764 -9.01191 -8.56580 -8.09789 -6.88027 -6.02844 -3.42712 0.92594 1.31808 2.08908 2.97590 3.26951 3.42987 3.47124 3.66755 4.17004 4.48657 4.79766 4.87291 4.97701 5.04267 5.31075 5.33044 5.45607 5.61082 5.72793 5.75149 5.91292 5.92892 6.12941 6.22978 6.24266 6.28600 6.30165 6.36679 6.46606 6.54404 6.76325 6.83923 6.87506 7.05381 8.02915 8.35706 8.95887 9.67457 10.07165 11.12801 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.005770 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.602495 B = 4851.716620 C = 5247.573532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.596 5.596 4 C -0.267 4.267 5 H 0.079 0.921 6 C 0.035 3.965 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.285 1.285 10 H -0.302 1.302 11 H -0.267 1.267 12 C 0.170 3.830 13 C -0.458 4.458 14 S 1.300 4.700 15 O -0.858 6.858 16 C -0.450 4.450 17 C -0.054 4.054 18 C -0.137 4.137 19 C -0.094 4.094 20 C -0.141 4.141 21 C -0.049 4.049 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -4.509 19.109 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 N -0.318 5.318 4 C -0.396 4.396 5 H 0.097 0.903 6 C -0.166 4.166 7 N -0.539 5.539 8 Si 0.706 3.294 9 H -0.213 1.213 10 H -0.231 1.231 11 H -0.192 1.192 12 C 0.041 3.959 13 C -0.599 4.599 14 S 1.498 4.502 15 O -0.853 6.853 16 C -0.546 4.546 17 C -0.073 4.073 18 C -0.157 4.157 19 C -0.112 4.112 20 C -0.160 4.160 21 C -0.068 4.068 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.890 -3.920 19.376 19.978 hybrid contribution 2.617 -0.436 -1.515 3.055 sum 5.507 -4.356 17.861 19.192 Atomic orbital electron populations 1.22248 0.98782 0.99522 1.01781 1.21151 0.92746 0.86513 0.99231 1.44234 1.73760 1.11360 1.02486 1.18834 1.33439 0.97285 0.90062 0.90296 1.25507 0.97654 0.98071 0.95319 1.69873 1.44015 1.40633 0.99360 0.86939 0.79965 0.83828 0.78681 1.21288 1.23052 1.19186 1.20562 0.90042 0.97223 0.88040 1.28547 1.07661 1.09583 1.14104 1.69167 0.91158 0.89426 1.00437 1.93086 1.81523 1.26127 1.84548 1.27965 1.17176 1.02172 1.07239 1.21197 0.92333 0.97676 0.96066 1.21264 0.97049 0.98185 0.99153 1.21293 0.99072 0.94475 0.96346 1.21250 0.93205 1.00079 1.01418 1.20870 0.97200 0.94361 0.94335 0.94153 0.93620 0.92255 0.92526 0.94556 0.92684 0.92997 0.92542 0.89142 0.87823 0.85507 0.86026 0.86046 0.85682 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.23 37.16 0.38 -2.56 16 2 C 0.13 2.69 5.01 -4.04 -0.02 2.67 16 3 N -0.60 -13.92 2.08 -173.24 -0.36 -14.28 16 4 C -0.27 -7.55 9.91 -15.06 -0.15 -7.70 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 6 C 0.04 1.03 5.26 -17.43 -0.09 0.94 16 7 N -0.90 -27.75 13.97 55.49 0.78 -26.97 16 8 Si 0.88 22.29 25.05 -169.99 -4.26 18.03 16 9 H -0.29 -6.98 6.69 56.52 0.38 -6.60 16 10 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.17 3.25 5.70 -4.05 -0.02 3.23 16 13 C -0.46 -7.95 6.21 37.16 0.23 -7.72 16 14 S 1.30 17.78 13.55 -107.50 -1.46 16.32 16 15 O -0.86 -16.91 16.90 -35.23 -0.60 -17.51 16 16 C -0.45 -6.19 5.61 -39.59 -0.22 -6.41 16 17 C -0.05 -0.82 9.44 -39.58 -0.37 -1.19 16 18 C -0.14 -1.76 10.05 -39.58 -0.40 -2.16 16 19 C -0.09 -1.03 10.05 -39.58 -0.40 -1.42 16 20 C -0.14 -1.44 10.05 -39.58 -0.40 -1.84 16 21 C -0.05 -0.52 9.75 -39.59 -0.39 -0.91 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.73 8.12 -51.93 -0.42 0.30 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 1.32 3.60 -51.93 -0.19 1.13 16 26 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 27 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.05 0.78 8.05 -51.92 -0.42 0.36 16 29 H 0.06 1.17 8.04 -51.93 -0.42 0.76 16 30 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 31 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.13 2.14 7.46 -52.49 -0.39 1.74 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -36.73 314.26 -8.23 -44.96 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.22 Total: -0.21 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -1.85 Total: -25.08 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.41 Total: -41.25 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.60 Total: -17.51 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.26 Total: 18.03 kcal Atomic # 16 Polarization: 17.78 SS G_CDS: -1.46 Total: 16.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.73 -8.23 -44.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355445347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.998 kcal (2) G-P(sol) polarization free energy of solvation -36.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds